Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005414

Physical Location & Seq

Genomic Coordinates Reverse (-)

461665 .. 463872

Gene Structure 2208 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0006500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2208 bp

ATGAGCCGGCCTTATCTGAGATTATTGAAGCATATCCATAATTTTCGCTATTGCGCCAACCCGTTCGAGTTTCAGAGATTCCAGCACTCTGGTTACCATTCACTCCCTGATATTCATCATGCCAAGTCGGTCAAGGATGGTTGTTTGCACCATTTGAATGTGGGGAACTATGTTGTTAGTCTGTACATGAAATCTAGAAACTTGGAGTATGCACACAAGCTGTTCGGTGAAATGCCCGAGAGAGATGTCCGGTCATGGACTATACTCATCTCTGGGTTTGCTCGGACTGGAGCTTGTAGAACGGTGCTGGAGCTTTTCAAGGGGATGCAAGCTGAGCGTGTTTGTCCGAACCAATTCACGCTATCCAGTGTTTTGAAGAGTTGTTCTAGTTTAAGCGATTTTCGGATGGGGAAGGGAGTCCACGGATGGATATTGAGAAATGGGATTGAATTGGATGTGGTGTTAGAGAACTCAATGCTTGATGTTTACTTCAAATGTGGGGAGTTGGATTATGCAGAAAGGTTGTTTGAGACTATGAAAGAGAGAGATACAGTTACTTGGAATATAATGATGGGTGCATATATGCATGTTGGGAATATGGAGAAGGCTTTTGAGTTGTTCAGAAGGTTACCCTCCAAAGATGTTGCTAGTTGGAATACAATCGTATACGGGTTGATGCAAAACGGGGATGGAAGGTCTGCATTGGAGCTACTTTATGAGATGGTGGAAAATGGAGTTGCATTCGAGGATGTCACTTTCTCCGTAGCTCTCGGTTTGGCTTCATCTTTGTATGTTCTGGAACTCGGGACACAGATTCATGGCTATCTTGTAAGGCGTGGTATTGAAAATGATGGATTTCTCCAAACTTCGTTGATAGATATGTATTGCAAATGTGGGAGAATGGACAAGGCATCACTGATATTCAAAAGAATGCCTCTTAGGGCAAAGTCTAAGTTTACATCTGACGAGATGAAGACTGAAATCGTATCATGGAGTTCAATGGTTTCTGGGTATGTTCGTAACGGTGAGCATGAATATGCTTTGATAACATTCCGTTCTATGCTTCGTGAAAAGATTATGGTGGATAGATTCTCTGTGACCAGTGTTGTTTCTGCATGTGCTAACCTTGGCATTTTGCTTCTGGGTCAAAACATCCATGCAGTCGTTCAGAAAATCGGGTACGTATTAGATGTTCATTTAGGTTCCTGCTATATTGATATGTATGCTAAATGTGGGAGTCTAAGTGATGCTTTGATGATTTTTGAACAAACTATTGATCCAAATGTTGTTCTGTGGACTTCAACGATTTCTGCTTGCGCTTTACATGGGCAAGGGAAGGAGGCTATACGACTCTTTGAACTCATGATAACAGAGGGAATTAAACCGAATGAGGTTACTTTCGTGGTGGTTTTAAATGCTTGCAGCCATGCTGGGCTCATTGAAGAAGGCTTCAAATATTTCAGCTTGATGAAAGAAGTTTATGGCATCAAGCCCGGAACTGAACACTTCACCTGTATGGTTGATCTTTATGGTCGTGCAGGTCGTTTGGAGGAGACTAAGGAGTTCATTCATGAAAACGGCATCTCTCACTTGAGTTCAGTTTGGAAGTCATTTCTATCTGCTTGCCGGCTTCATAAAAATTTAGAGCTGGGAAAGTGGGTTTCTGAAAAGCTACTCCAACTCGAACCTTCTGATGAGGGGCCTTATGTTTTGATGTCAAACATGTGTGCTGTGAATCACAGATGGGAAGAAGCAGCTGAAATGAGGAGGTTGATGCAACAGAGAGGAATTAACAAAGTCCCCGGTCAATCATGGATCCAACTGAAGAATCAAGTCCACTCCTTCGTGATGGGAGACCGGTGTCATCCACATTGCACTGAGATATATTCATACTTGGACGAACTTATTGCAAGACTGAAGCCAATCGGGTATTCAATGGATGCAAAGCTGGTGATGCAGGACGTAGAAGAAGAACAAGGAGAAGTACTTCTTGGTCATCACAGTGAAAAGCTTGCAATTGCCTATGGCATCATTAGCACATCTTCTGGGATACCTATTCGGATAATGAAGAACCTTAGAGTGTGTAGTGATTGTCACAACTTCATTAAATATACTTCTCAGCTTTTAGATAGGGAAATAATTGTCAGAGACCTTCATCGGTTTCATCATTTTAAGCATGGGAGCTGCTCCTGTGGAGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03010 ko04714 map03010 map04714

Pfam Domains

Protein Families

JmjC WRC zf-4CXXC_R1

Protein Analysis

735

Amino Acids

83.89

Weight (kDa)

6.9

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	82 - 129	7.6e-07	PPR repeat family
PPR_2	PF13041	182 - 213	5.5e-07	PPR repeat family
PPR	PF01535	185 - 214	9.5e-07	PPR repeat
PPR_2	PF13041	213 - 257	3e-07	PPR repeat family
PPR_2	PF13041	328 - 375	6.6e-06	PPR repeat family
PPR_3	PF13812	423 - 474	2.9e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	427 - 475	3.5e-11	PPR repeat family
E_motif	PF20431	545 - 607	2.5e-15	E motif
Eplus_motif	PF20430	612 - 639	5.3e-06	E+ motif
DYW_deaminase	PF14432	643 - 735	2.2e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09060 AT1G09060 AT1G09060 AT1G09060
fragaria_vesca	FvH4_6g06290 FvH4_6g06290 FvH4_6g06290 FvH4_6g06290
malus_domestica	MD04G1202800.v1.1 MD12G1216600.v1.1
prunus_persica	Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1
pyrus_communis	pycom04g17890 pycom12g20210
rosa_chinensis	RchiOBHm_Chr3g0455331
rosa_laevigata	RLG00000025369
rosa_multiflora	Rmu_sc0002169.1_g000043
rosa_roxburghii	Rroxscaffold_6G00424370
rosa_rugosa	Rorug03G0006300 Rorug03G0006400 Rorug03G0006500
rosa_samantha	Rh3AG066100 Rh3BG068300 Rh3CG066700 Rh3DG068200
rosa_wichuraiana	Rw3G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1529
AccI	GTMKAC	1 cut(s)	666
AclWI	GGATC	3 cut(s)	1271, 1810, 1823
AcsI	RAATTY	1 cut(s)	1639
AcuI	CTGAAG	2 cut(s)	1844, 1937
AfaI	GTAC	3 cut(s)	185, 1181, 1986
AflIII	ACRYGT	1 cut(s)	1722
AgeI	ACCGGT	1 cut(s)	1857
AjuI	GAANNNNNNNTTGG	4 cut(s)	1915, 1947, 1974, 2006
Alw26I	GTCTC	4 cut(s)	524, 1547, 1848, 2142
AlwI	GGATC	3 cut(s)	1271, 1810, 1823
Ama87I	CYCGRG	2 cut(s)	236, 803
AoxI	GGCC	2 cut(s)	8, 1700
ApeKI	GCWGC	3 cut(s)	1422, 1754, 2184
ApoI	RAATTY	1 cut(s)	1639
AsiGI	ACCGGT	1 cut(s)	1857
Asp700I	GAANNNNTTC	2 cut(s)	353, 1986
AspLEI	GCGC	2 cut(s)	56, 1319
AspS9I	GGNCC	1 cut(s)	1700
AsuC2I	CCSGG	2 cut(s)	1494, 1803
AsuHPI	GGTGA	4 cut(s)	239, 1037, 1501, 1963
AvaI	CYCGRG	2 cut(s)	236, 803
BamHI	GGATCC	1 cut(s)	1815
BanII	GRGCYC	1 cut(s)	1437
BbsI	GAAGAC	1 cut(s)	980
BbvI	GCAGC	3 cut(s)	1434, 1766, 2171
BccI	CCATC	9 cut(s)	131, 400, 420, 565, 683, 715, 845, 1737, 1843
BceAI	ACGGC	1 cut(s)	1594
BcgI	CGANNNNNNTGC	2 cut(s)	1889, 1923
BciVI	GTATCC	1 cut(s)	2043
BcnI	CCSGG	2 cut(s)	1494, 1803
BcoDI	GTCTC	4 cut(s)	524, 1547, 1848, 2142
BfaI	CTAG	3 cut(s)	195, 387, 648
BfuAI	ACCTGC	1 cut(s)	1529
BfuI	GTATCC	1 cut(s)	2043
BisI	GCNGC	3 cut(s)	1423, 1755, 2185
BlpI	GCTNAGC	1 cut(s)	333
BlsI	GCNGC	3 cut(s)	1424, 1756, 2186
BmcAI	AGTACT	1 cut(s)	1986
Bme1390I	CCNGG	2 cut(s)	1494, 1803
BmeT110I	CYCGRG	2 cut(s)	236, 803
BmgT120I	GGNCC	1 cut(s)	1700
BmiI	GGNNCC	3 cut(s)	1204, 1701, 1817
BmrFI	CCNGG	2 cut(s)	1494, 1803
BoxI	GACNNNNGTC	1 cut(s)	1860
BpiI	GAAGAC	1 cut(s)	980
BpmI	CTGGAG	2 cut(s)	309, 329
Bpu1102I	GCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	1612
BpuMI	CCSGG	2 cut(s)	1494, 1803
BsaAI	YACGTR	1 cut(s)	1183
BsaBI	GATNNNNATC	1 cut(s)	114
BsaI	GGTCTC	2 cut(s)	1848, 2142
BsaJI	CCNNGG	3 cut(s)	421, 1126, 1801
BsaWI	WCCGGW	2 cut(s)	249, 1857
BsaXI	ACNNNNNCTCC	2 cut(s)	1228, 1258
Bse118I	RCCGGY	3 cut(s)	6, 1626, 1857
Bse1I	ACTGG	3 cut(s)	292, 366, 1101
Bse3DI	GCAATG	1 cut(s)	1870
Bse8I	GATNNNNATC	1 cut(s)	114
BseDI	CCNNGG	3 cut(s)	421, 1126, 1801
BseJI	GATNNNNATC	1 cut(s)	114
BseMI	GCAATG	1 cut(s)	1870
BseMII	CTCAG	4 cut(s)	8, 324, 1869, 2132
BseNI	ACTGG	3 cut(s)	292, 366, 1101
BseRI	GAGGAG	2 cut(s)	1565, 1780
BseXI	GCAGC	3 cut(s)	1434, 1766, 2171
BseYI	CCCAGC	2 cut(s)	1430, 1648
BsgI	GTGCAG	1 cut(s)	1557
BshFI	GGCC	2 cut(s)	10, 1702
BshTI	ACCGGT	1 cut(s)	1857
BsiHKCI	CYCGRG	2 cut(s)	236, 803
BsiSI	CCGG	6 cut(s)	7, 250, 1494, 1627, 1803, 1858
BslFI	GGGAC	2 cut(s)	820, 1784
BsmAI	GTCTC	4 cut(s)	524, 1547, 1848, 2142
BsmFI	GGGAC	2 cut(s)	820, 1784
BsmI	GAATGC	2 cut(s)	740, 936
BsnI	GGCC	2 cut(s)	10, 1702
Bso31I	GGTCTC	2 cut(s)	1848, 2142
BsoBI	CYCGRG	2 cut(s)	236, 803
Bsp1286I	GDGCHC	1 cut(s)	1437
Bsp1407I	TGTACA	1 cut(s)	183
Bsp143I	GATC	3 cut(s)	1276, 1522, 1815
Bsp1720I	GCTNAGC	1 cut(s)	333
BspANI	GGCC	2 cut(s)	10, 1702
BspCNI	CTCAG	4 cut(s)	9, 325, 1870, 2131
BspHI	TCATGA	2 cut(s)	1362, 1570
BspLI	GGNNCC	3 cut(s)	1204, 1701, 1817
BspMI	ACCTGC	1 cut(s)	1529
BspPI	GGATC	3 cut(s)	1271, 1810, 1823
BspTNI	GGTCTC	2 cut(s)	1848, 2142
BsrDI	GCAATG	1 cut(s)	1870
BsrFI	RCCGGY	3 cut(s)	6, 1626, 1857
BsrGI	TGTACA	1 cut(s)	183
BsrI	ACTGG	3 cut(s)	292, 366, 1101
BssAI	RCCGGY	3 cut(s)	6, 1626, 1857
BssECI	CCNNGG	3 cut(s)	421, 1126, 1801
BssMI	GATC	3 cut(s)	1276, 1522, 1815
BssNAI	GTATAC	1 cut(s)	667
BssT1I	CCWWGG	1 cut(s)	1126
Bst1107I	GTATAC	1 cut(s)	667
Bst4CI	ACNGT	4 cut(s)	304, 553, 1025, 2003
Bst6I	CTCTTC	1 cut(s)	371
BstAUI	TGTACA	1 cut(s)	183
BstBAI	YACGTR	1 cut(s)	1183
BstC8I	GCNNGC	7 cut(s)	8, 330, 1315, 1420, 1624, 1628, 2013
BstDEI	CTNAG	9 cut(s)	17, 333, 938, 951, 1241, 1557, 1878, 2075, 2118
BstDSI	CCRYGG	1 cut(s)	421
BstEII	GGTNACC	2 cut(s)	92, 627
BstHHI	GCGC	2 cut(s)	56, 1319
BstKTI	GATC	3 cut(s)	1279, 1525, 1818
BstMAI	GTCTC	4 cut(s)	524, 1547, 1848, 2142
BstMBI	GATC	3 cut(s)	1276, 1522, 1815
BstMWI	GCNNNNNNNGC	3 cut(s)	334, 1954, 2034
BstNSI	RCATGY	3 cut(s)	590, 1119, 1726
BstPAI	GACNNNNGTC	1 cut(s)	1860
BstPI	GGTNACC	2 cut(s)	92, 627
BstSCI	CCNGG	2 cut(s)	1492, 1801
BstSNI	TACGTA	1 cut(s)	1183
BstV1I	GCAGC	3 cut(s)	1434, 1766, 2171
BstV2I	GAAGAC	1 cut(s)	980
BstX2I	RGATCY	1 cut(s)	1815
BstXI	CCANNNNNNTGG	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	1815
BstZ17I	GTATAC	1 cut(s)	667
BsuI	GTATCC	1 cut(s)	2043
BsuRI	GGCC	2 cut(s)	10, 1702
BtgI	CCRYGG	1 cut(s)	421
BtsIMutI	CAGTG	5 cut(s)	373, 914, 1108, 1875, 2008
BveI	ACCTGC	1 cut(s)	1529
Cac8I	GCNNGC	7 cut(s)	8, 330, 1315, 1420, 1624, 1628, 2013
CciI	TCATGA	2 cut(s)	1362, 1570
CfoI	GCGC	2 cut(s)	56, 1319
Cfr10I	RCCGGY	3 cut(s)	6, 1626, 1857
Cfr13I	GGNCC	1 cut(s)	1700
Csp6I	GTAC	3 cut(s)	184, 1180, 1985
CspAI	ACCGGT	1 cut(s)	1857
CviQI	GTAC	3 cut(s)	184, 1180, 1985
DdeI	CTNAG	9 cut(s)	17, 333, 938, 951, 1241, 1557, 1878, 2075, 2118
DpnI	GATC	3 cut(s)	1278, 1524, 1817
DpnII	GATC	3 cut(s)	1276, 1522, 1815
DraI	TTTAAA	1 cut(s)	1413
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Eco105I	TACGTA	1 cut(s)	1183
Eco130I	CCWWGG	1 cut(s)	1126
Eco24I	GRGCYC	1 cut(s)	1437
Eco31I	GGTCTC	2 cut(s)	1848, 2142
Eco57I	CTGAAG	2 cut(s)	1844, 1937
Eco88I	CYCGRG	2 cut(s)	236, 803
Eco91I	GGTNACC	2 cut(s)	92, 627
EcoO109I	RGGNCCY	1 cut(s)	1700
EcoO65I	GGTNACC	2 cut(s)	92, 627
EcoT14I	CCWWGG	1 cut(s)	1126
EcoT22I	ATGCAT	1 cut(s)	588
EcoT38I	GRGCYC	1 cut(s)	1437
ErhI	CCWWGG	1 cut(s)	1126
FalI	AAGNNNNNCTT	4 cut(s)	1234, 1266, 1974, 2006
FaqI	GGGAC	2 cut(s)	820, 1784
FblI	GTMKAC	1 cut(s)	666
Fnu4HI	GCNGC	3 cut(s)	1423, 1755, 2185
FriOI	GRGCYC	1 cut(s)	1437
Fsp4HI	GCNGC	3 cut(s)	1423, 1755, 2185
FspBI	CTAG	3 cut(s)	195, 387, 648
GlaI	GCGC	2 cut(s)	55, 1318
GluI	GCNGC	3 cut(s)	1423, 1755, 2185
GsaI	CCCAGC	2 cut(s)	1434, 1652
GsuI	CTGGAG	2 cut(s)	309, 329
HaeIII	GGCC	2 cut(s)	10, 1702
HapII	CCGG	6 cut(s)	7, 250, 1494, 1627, 1803, 1858
HhaI	GCGC	2 cut(s)	56, 1319
Hin6I	GCGC	2 cut(s)	54, 1317
HinP1I	GCGC	2 cut(s)	54, 1317
HindIII	AAGCTT	1 cut(s)	2009
HinfI	GANTC	8 cut(s)	78, 417, 814, 1089, 1237, 1350, 1735, 1828
HpaII	CCGG	6 cut(s)	7, 250, 1494, 1627, 1803, 1858
HphI	GGTGA	4 cut(s)	239, 1037, 1501, 1963
Hpy166II	GTNNAC	6 cut(s)	421, 487, 667, 957, 1296, 1837
Hpy188III	TCNNGA	7 cut(s)	195, 797, 805, 1067, 1363, 1571, 1846
Hpy8I	GTNNAC	6 cut(s)	421, 487, 667, 957, 1296, 1837
HpyAV	CCTTC	9 cut(s)	406, 598, 618, 687, 1330, 1439, 1698, 1852, 2162
HpyCH4III	ACNGT	4 cut(s)	304, 553, 1025, 2003
HpyCH4IV	ACGT	2 cut(s)	1182, 1962
HpyF10VI	GCNNNNNNNGC	3 cut(s)	334, 1954, 2034
HpyF3I	CTNAG	9 cut(s)	17, 333, 938, 951, 1241, 1557, 1878, 2075, 2118
HpySE526I	ACGT	2 cut(s)	1182, 1962
HspAI	GCGC	2 cut(s)	54, 1317
KroI	GCCGGC	2 cut(s)	6, 1626
KroNI	GCCGGC	2 cut(s)	8, 1628
Kzo9I	GATC	3 cut(s)	1276, 1522, 1815
LmnI	GCTCC	5 cut(s)	290, 310, 706, 2181, 2192
Lsp1109I	GCAGC	3 cut(s)	1434, 1766, 2171
MaeI	CTAG	3 cut(s)	195, 387, 648
MaeII	ACGT	2 cut(s)	1182, 1962
MaeIII	GTNAC	8 cut(s)	92, 553, 627, 751, 1019, 1096, 1393, 2093
MalI	GATC	3 cut(s)	1278, 1524, 1817
MboI	GATC	3 cut(s)	1276, 1522, 1815
MboII	GAAGA	9 cut(s)	388, 985, 1454, 1760, 1837, 1979, 1982, 2034, 2080
MfeI	CAATTG	1 cut(s)	2016
MflI	RGATCY	1 cut(s)	1815
MhlI	GDGCHC	1 cut(s)	1437
MluCI	AATT	8 cut(s)	40, 353, 449, 1377, 1639, 1788, 2016, 2139
MlyI	GAGTC	3 cut(s)	426, 1246, 1344
MmeI	TCCRAC	4 cut(s)	486, 632, 1702, 1843
Mph1103I	ATGCAT	1 cut(s)	588
MroNI	GCCGGC	2 cut(s)	6, 1626
MroXI	GAANNNNTTC	2 cut(s)	353, 1986
MseI	TTAA	6 cut(s)	392, 1380, 1412, 1791, 2106, 2172
MslI	CAYNNNNRTG	4 cut(s)	156, 1035, 1514, 2001
MspA1I	CMGCKG	1 cut(s)	1757
MspI	CCGG	6 cut(s)	7, 250, 1494, 1627, 1803, 1858
MspR9I	CCNGG	2 cut(s)	1494, 1803
MunI	CAATTG	1 cut(s)	2016
Mva1269I	GAATGC	2 cut(s)	740, 936
MwoI	GCNNNNNNNGC	3 cut(s)	334, 1954, 2034
NaeI	GCCGGC	2 cut(s)	8, 1628
NciI	CCSGG	2 cut(s)	1494, 1803
NdeII	GATC	3 cut(s)	1276, 1522, 1815
NgoMIV	GCCGGC	2 cut(s)	6, 1626
NlaIV	GGNNCC	3 cut(s)	1204, 1701, 1817
NmuCI	GTSAC	3 cut(s)	751, 1096, 2093
NsiI	ATGCAT	1 cut(s)	588
NspI	RCATGY	3 cut(s)	590, 1119, 1726
PagI	TCATGA	2 cut(s)	1362, 1570
PciI	ACATGT	1 cut(s)	1722
PcsI	WCGNNNNNNNCGW	1 cut(s)	1540
PctI	GAATGC	2 cut(s)	740, 936
PdiI	GCCGGC	2 cut(s)	8, 1628
PdmI	GAANNNNTTC	2 cut(s)	353, 1986
PfeI	GAWTC	5 cut(s)	78, 814, 1089, 1735, 1828
PinAI	ACCGGT	1 cut(s)	1857
PkrI	GCNGC	3 cut(s)	1424, 1756, 2186
PleI	GAGTC	3 cut(s)	425, 1245, 1344
PpsI	GAGTC	3 cut(s)	425, 1245, 1344
Ppu21I	YACGTR	1 cut(s)	1183
PscI	ACATGT	1 cut(s)	1722
PshAI	GACNNNNGTC	1 cut(s)	1860
PspEI	GGTNACC	2 cut(s)	92, 627
PspFI	CCCAGC	2 cut(s)	1430, 1648
PspN4I	GGNNCC	3 cut(s)	1204, 1701, 1817
PspPI	GGNCC	1 cut(s)	1700
PsrI	GAACNNNNNNTAC	2 cut(s)	1176, 1208
PsuI	RGATCY	1 cut(s)	1815
PvuII	CAGCTG	1 cut(s)	1757
RsaI	GTAC	3 cut(s)	185, 1181, 1986
RsaNI	GTAC	3 cut(s)	184, 1180, 1985
RseI	CAYNNNNRTG	4 cut(s)	156, 1035, 1514, 2001
SaqAI	TTAA	6 cut(s)	392, 1380, 1412, 1791, 2106, 2172
SatI	GCNGC	3 cut(s)	1423, 1755, 2185
Sau3AI	GATC	3 cut(s)	1276, 1522, 1815
Sau96I	GGNCC	1 cut(s)	1700
ScaI	AGTACT	1 cut(s)	1986
SchI	GAGTC	3 cut(s)	426, 1246, 1344
ScrFI	CCNGG	2 cut(s)	1494, 1803
SduI	GDGCHC	1 cut(s)	1437
SmiMI	CAYNNNNRTG	4 cut(s)	156, 1035, 1514, 2001
SmlI	CTYRAG	1 cut(s)	1591
SmoI	CTYRAG	1 cut(s)	1591
SnaBI	TACGTA	1 cut(s)	1183
Sse9I	AATT	8 cut(s)	40, 353, 449, 1377, 1639, 1788, 2016, 2139
SspI	AATATT	1 cut(s)	1457
SspMI	CTAG	3 cut(s)	195, 387, 648
StyD4I	CCNGG	2 cut(s)	1492, 1801
StyI	CCWWGG	1 cut(s)	1126
TaaI	ACNGT	4 cut(s)	304, 553, 1025, 2003
TaiI	ACGT	2 cut(s)	1185, 1965
TaqI	TCGA	3 cut(s)	66, 744, 1683
TaqII	GACCGA	1 cut(s)	118
TasI	AATT	8 cut(s)	40, 353, 449, 1377, 1639, 1788, 2016, 2139
TatI	WGTACW	2 cut(s)	183, 1984
TfiI	GAWTC	5 cut(s)	78, 814, 1089, 1735, 1828
Tru1I	TTAA	6 cut(s)	392, 1380, 1412, 1791, 2106, 2172
Tru9I	TTAA	6 cut(s)	392, 1380, 1412, 1791, 2106, 2172
TscAI	CASTG	5 cut(s)	373, 921, 1108, 1882, 2008
TseFI	GTSAC	3 cut(s)	751, 1096, 2093
TseI	GCWGC	3 cut(s)	1422, 1754, 2184
Tsp45I	GTSAC	3 cut(s)	751, 1096, 2093
TspGWI	ACGGA	3 cut(s)	438, 751, 1043
TspRI	CASTG	5 cut(s)	373, 921, 1108, 1882, 2008
XapI	RAATTY	1 cut(s)	1639
XbaI	TCTAGA	1 cut(s)	194
XceI	RCATGY	3 cut(s)	590, 1119, 1726
XmiI	GTMKAC	1 cut(s)	666
XmnI	GAANNNNTTC	2 cut(s)	353, 1986
XspI	CTAG	3 cut(s)	195, 387, 648
ZrmI	AGTACT	1 cut(s)	1986
Zsp2I	ATGCAT	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.