Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005414

Physical Location & Seq

Genomic Coordinates Reverse (-)

5085941 .. 5092721

Gene Structure 6781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42227

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2865 bp

ATGGATCACCTACGTTCAACCCCTGGTAATGGCGAGGATAATGTCGGTATTCCTGATGATATGCGATGCAAGAGATCAGATGGGAAACAGTGGAGGTGCACGGCCATGTCTATGCCAGATAAAACAGTATGTGAAAAGCACTATATCCAGGCAAAGAAGAGGGCAGCTAATTCTGCAATGCGTGCTAATATGAAAAAAGCCAAGAGAAAATCGTTAGGGGAAAGTGATGTTTACTTGGAGAGTAAGAGTGATGATTTTGACGTGCCACTGGCAAGTATCAAATCAGAGGAGTTTTCTCGTCCGTCCCCAGGGAAAAAGTTCACCAAGATATCAAGAAACCAGTTTCGTTATTCACCTGATCCACCACCTATGAGGAGCGTGTCTAGGCATAATCCTCCAAATGACGAGAGAGAATCGGACGAGTATGAGGAAGATTGGAGTTCTTATAAGACACCACCTGTTTCTGCCTTGGACTCATCCATGAATAGGCCACAAAGTTTTGATGCTAATGCTATGACAGTTTCGGAATCCTCTGATGGAAGCTCAGAATCCTCTCAAGAGGCTGGTGGTCAAACTTGTCATCAGTGCCGGAGGAAGGACGACACAGTCATCTGGTGCCACAGATGTGATAGACGAGGATACTGTGATAGTTGTATTCGTACATGGTATTCGAACACCCCATTGGAAGATATTCAGAGCTCTTGTCCTGCATGTTGTGGTACCTGTAATTGCAAAGTGTGCCTTCGTAGAGACAATTTAGTAAAGGTAAGGATCAGAGAGATTCCCGCTCTAGACAAGTTGCAATATCTCCATTGTCTGCTGTCTTCTGTGCTCCCTGTGGTTAAGCAAATCCATCAAGAACAGTGCTTTGAAGTAGAACTAGAAAAAAAGCTTCGTGGAAGTGATATAGATCTTGCCCGGACAAAACTGAATGCAGATGAGCAGATGTGCTGCAATTTCTGTAGGATTCCCATCATTGATTATCATTGGCATTGTCCCAATTGTGCTTATGATCTGTGCCTTAACTGCTGTCTCGATCTTCGAGAAGCATCTATGCAAGTTGTCAAAGGAGAAGTGTCACAGGAGATTGGTGATGAAAATCAAGAAAAGGGAACCGTGCTGGAGCAGTTGCCGAAAGTCAGACTAATTTTTTCAGAAAAGTTCTCTGACTGGAAAGCGAACAGTGATGGCAGTATTCCTTGCCCCCCGAAGGAGTATGGTGGCTGTGGTTATTCAACATTGAGTTTAAGTCGTATCTTTAAGATGAACTGGGTTGCAAAGCTTGTCAAGAATGTGGAGGAAATGGTTAGTGGCTGTAGGGTTAATGATGCTGACCATCTAGAGAAAACTGAAGTTAATGATCCAAGACTTTGTCAGTATGCCCATAGAGAGGACAGTGACAATTTCTTGTACTGTCCTTCATCCCAGGATATTAAATCTGATGGGATTGCCAATTTTAAAAGACATTGGCTCAGGGGTGAGCCCATCATTGTAAAGCGGGTATTTGATAGCTCATCAGTTTCAAGCTGGGATCCCATGGTTATATGGAGAGGGATTCGGGAGACAACAGATGAAAAATCAAAAGATCAGAACAGAAAGGTGAAGGCTATCGATTGCTATGACTGGTCTGAGGTTGATATTGAGGTTGGTCACTTCATCGAAGGATACTCTGAGGGACAAATTTATGAAAATGGTCGGCCAAAAATTTTAAAATTAAAAGACTGGCCCTCTCCCAGTGCTTCTGAAGAGTTTCTATTGTATCAGAGACCTGAATTTATCAGTAAACTGCCTTTACTTGAGTATATTCACTCCAAGTTTGGTCTTTTAAATGTTGCTGCAAAATTGCCCCATTATTCTTTGCAAAATGATGTGGGACCTAAGATTTTCATATCTTATGGGACCCATGAGGAACTTGATAGAGGCAATTCTGTGACCAATCTTCATTTCAACATGCGTGACATGGTATATTTGCTGGTGCATGCATGTGAGGTGAAGCAAAAAGGTCGGCAGAAGACAAAAACTGAGAACATGCAAAAACCCTTCGAGGAATCTGAGGTTAAAGAATCTCATGAGGATCTGGAAATGGGTACTGGAGACAGTACGTTCCCTGATCTATCAATTGATCAGAATGAGGAGAATCCATATGAGGCAAGGTTGGATACAGATAAAGTTGATAGTGCAGCTGATCATGGGATTGAAACTACTCCTGTTGAAGGGAATACCATCAGTTGTGAACAGTCAGAGAAAGAGGGTGATGATATCTCTCAAAAGACTCATCCTGGAGTTTTTTGGGATGTTTTCCGTCGAAAGGATGTTCCAAAGCTGACCGAGTATCTAAGAATACATGGGGAAGAATTTGGGAAGCTGAAGAGTGAAACAAACAACTTTGTGACAAGACCTCTTTATGATGAAACACTGTTCCTGAATGAAAATCACAAAAGAAAATTGAAGGAAGAATTTGGGGTAGAGCCATGGTCCTTTGAACAGAATTTGGGGCAAGCTGTATTCATCCCTGCTGGATGCCCGTTTCAAGTCAGGAATCTTCAGTCTACGGTTCAGCTGGGTCTTGATTTCTTATCTCCTGAAAGCCTTGGTGACGCTGCAAGACTGGCTGAAGAAATTCGCTGTCTTCCAAATGATCATGAAGCAAAGCAGCAAGTGTTGGAGGTTGGACAAGGGAAATTTTACGTAGAAGTAGGAAAGATATCACTTTATGCAGCAAGTTCAGCTATTAAAGAAATTCAGAAATTGGTACTTGATCCAAAATTCAGTGGAGAGCTTGGGTTTGAAGATCCAAATTTGATTGCAGCAGTTTCTGAGAATTTGGAGAAAATTACCAAGCGAAGACAGATAGCATGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03010 ko04714 map03010 map04714

Pfam Domains

Protein Families

JmjC WRC zf-4CXXC_R1

Protein Analysis

954

Amino Acids

108.76

Weight (kDa)

5.51

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRC	PF08879	18 - 58	4.7e-14	WRC
zf-4CXXC_R1	PF10497	188 - 254	2.3e-06	Zinc-finger domain of monoamine-oxidase A repressor R1
JmjC	PF02373	762 - 854	2.6e-08	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09060 AT1G09060 AT1G09060 AT1G09060
fragaria_vesca	FvH4_6g06290 FvH4_6g06290 FvH4_6g06290 FvH4_6g06290
malus_domestica	MD04G1202800.v1.1 MD12G1216600.v1.1
prunus_persica	Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1
pyrus_communis	pycom04g17890 pycom12g20210
rosa_chinensis	RchiOBHm_Chr3g0455331
rosa_laevigata	RLG00000025369
rosa_multiflora	Rmu_sc0002169.1_g000043
rosa_roxburghii	Rroxscaffold_6G00424370
rosa_rugosa	Rorug03G0006300 Rorug03G0006400 Rorug03G0006500
rosa_samantha	Rh3AG066100 Rh3BG068300 Rh3CG066700 Rh3DG068200
rosa_wichuraiana	Rw3G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AasI	GACNNNNNNGTC	1 cut(s)	605
Acc65I	GGTACC	1 cut(s)	719
AccB1I	GGYRCC	2 cut(s)	615, 719
AccBSI	CCGCTC	1 cut(s)	788
AccI	GTMKAC	1 cut(s)	2549
AciI	CCGC	2 cut(s)	786, 1498
AclWI	GGATC	9 cut(s)	12, 353, 779, 1355, 1526, 1539, 2082, 2753, 2786
AcoI	YGGCCR	2 cut(s)	102, 1697
AcuI	CTGAAG	5 cut(s)	1371, 1764, 2387, 2528, 2634
AfaI	GTAC	7 cut(s)	661, 721, 1412, 2089, 2101, 2754, 2860
AfiI	CCNNNNNNNGG	8 cut(s)	29, 308, 486, 595, 1210, 1390, 2213, 2308
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	5 cut(s)	22, 147, 307, 1425, 2278
AjuI	GAANNNNNNNTTGG	4 cut(s)	665, 697, 1928, 1960
AleI	CACNNNNGTG	1 cut(s)	624
Alw21I	GWGCWC	3 cut(s)	101, 701, 834
Alw26I	GTCTC	5 cut(s)	744, 1037, 1556, 1759, 2088
Alw44I	GTGCAC	1 cut(s)	97
AlwI	GGATC	9 cut(s)	12, 353, 779, 1355, 1526, 1539, 2082, 2753, 2786
AlwNI	CAGNNNCTG	1 cut(s)	2816
AoxI	GGCC	4 cut(s)	102, 488, 1697, 1724
ApaLI	GTGCAC	1 cut(s)	97
ApeKI	GCWGC	8 cut(s)	164, 951, 1835, 2180, 2600, 2653, 2717, 2807
Asp700I	GAANNNNTTC	4 cut(s)	317, 690, 1749, 2619
Asp718I	GGTACC	1 cut(s)	719
AspS9I	GGNCC	4 cut(s)	1725, 1874, 1899, 2475
AsuC2I	CCSGG	1 cut(s)	919
AsuHPI	GGTGA	8 cut(s)	313, 345, 1103, 1490, 1612, 2002, 2264, 2606
AsuII	TTCGAA	1 cut(s)	671
AvaII	GGWCC	3 cut(s)	1874, 1899, 2475
BaeGI	GKGCMC	1 cut(s)	101
BamHI	GGATCC	1 cut(s)	1531
BanI	GGYRCC	2 cut(s)	615, 719
BanII	GRGCYC	2 cut(s)	701, 1485
BbsI	GAAGAC	4 cut(s)	816, 2018, 2621, 2851
Bbv12I	GWGCWC	3 cut(s)	101, 701, 834
BbvI	GCAGC	8 cut(s)	176, 938, 1822, 2192, 2587, 2665, 2729, 2819
BccI	CCATC	9 cut(s)	74, 530, 861, 980, 1181, 1344, 1436, 1493, 2231
BceAI	ACGGC	1 cut(s)	117
BcgI	CGANNNNNNTGC	2 cut(s)	1985, 2019
BciT130I	CCWGG	5 cut(s)	24, 149, 309, 1427, 2280
BciVI	GTATCC	3 cut(s)	632, 1658, 2152
BclI	TGATCA	3 cut(s)	2122, 2185, 2638
BcnI	CCSGG	1 cut(s)	919
BcoDI	GTCTC	5 cut(s)	744, 1037, 1556, 1759, 2088
BfaI	CTAG	4 cut(s)	384, 791, 881, 1340
BfmI	CTRYAG	2 cut(s)	961, 1315
BfuI	GTATCC	3 cut(s)	632, 1658, 2152
BglII	AGATCT	1 cut(s)	910
BisI	GCNGC	8 cut(s)	165, 952, 1836, 2181, 2601, 2654, 2718, 2808
BlsI	GCNGC	8 cut(s)	166, 953, 1837, 2182, 2602, 2655, 2719, 2809
Bme1390I	CCNGG	6 cut(s)	24, 149, 309, 919, 1427, 2280
Bme18I	GGWCC	3 cut(s)	1874, 1899, 2475
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	4 cut(s)	1725, 1874, 1899, 2475
BmiI	GGNNCC	7 cut(s)	617, 721, 1114, 1533, 1875, 1900, 1901
BmrFI	CCNGG	6 cut(s)	24, 149, 309, 919, 1427, 2280
BmrI	ACTGGG	2 cut(s)	1279, 1728
BmsI	GCATC	5 cut(s)	56, 493, 1058, 1318, 2510
BmuI	ACTGGG	2 cut(s)	1279, 1728
BpiI	GAAGAC	4 cut(s)	816, 2018, 2621, 2851
BpmI	CTGGAG	3 cut(s)	1142, 2112, 2301
Bpu10I	CCTNAGC	1 cut(s)	1472
Bpu14I	TTCGAA	1 cut(s)	671
BpuEI	CTTGAG	2 cut(s)	540, 1817
BpuMI	CCSGG	1 cut(s)	919
Bsa29I	ATCGAT	1 cut(s)	1611
BsaAI	YACGTR	1 cut(s)	2689
BsaBI	GATNNNNATC	3 cut(s)	909, 971, 1098
BsaI	GGTCTC	1 cut(s)	1759
BsaJI	CCNNGG	8 cut(s)	22, 307, 308, 468, 1425, 1536, 2471, 2590
Bsc4I	CCNNNNNNNGG	8 cut(s)	29, 308, 486, 595, 1210, 1390, 2213, 2308
Bse1I	ACTGG	9 cut(s)	273, 340, 1175, 1274, 1628, 1727, 1734, 2095, 2613
Bse3DI	GCAATG	1 cut(s)	183
Bse8I	GATNNNNATC	3 cut(s)	909, 971, 1098
BseBI	CCWGG	5 cut(s)	24, 149, 309, 1427, 2280
BseCI	ATCGAT	1 cut(s)	1611
BseDI	CCNNGG	8 cut(s)	22, 307, 308, 468, 1425, 1536, 2471, 2590
BseGI	GGATG	7 cut(s)	476, 1421, 2275, 2299, 2317, 2508, 2525
BseJI	GATNNNNATC	3 cut(s)	909, 971, 1098
BseLI	CCNNNNNNNGG	8 cut(s)	29, 308, 486, 595, 1210, 1390, 2213, 2308
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	7 cut(s)	558, 1486, 1620, 1662, 2013, 2043, 2808
BseNI	ACTGG	9 cut(s)	273, 340, 1175, 1274, 1628, 1727, 1734, 2095, 2613
BseRI	GAGGAG	3 cut(s)	302, 388, 2147
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	8 cut(s)	176, 938, 1822, 2192, 2587, 2665, 2729, 2819
BseYI	CCCAGC	2 cut(s)	1527, 2560
BsgI	GTGCAG	1 cut(s)	2199
BshFI	GGCC	4 cut(s)	104, 490, 1699, 1726
BshNI	GGYRCC	2 cut(s)	615, 719
BshVI	ATCGAT	1 cut(s)	1611
BsiHKAI	GWGCWC	3 cut(s)	101, 701, 834
BsiSI	CCGG	2 cut(s)	589, 919
BslFI	GGGAC	5 cut(s)	289, 981, 1689, 1887, 1912
BslI	CCNNNNNNNGG	8 cut(s)	29, 308, 486, 595, 1210, 1390, 2213, 2308
BsmAI	GTCTC	5 cut(s)	744, 1037, 1556, 1759, 2088
BsmFI	GGGAC	5 cut(s)	289, 981, 1689, 1887, 1912
BsmI	GAATGC	1 cut(s)	937
BsnI	GGCC	4 cut(s)	104, 490, 1699, 1726
Bso31I	GGTCTC	1 cut(s)	1759
Bsp119I	TTCGAA	1 cut(s)	671
Bsp1286I	GDGCHC	4 cut(s)	101, 701, 834, 1485
Bsp19I	CCATGG	2 cut(s)	1536, 2471
BspACI	CCGC	2 cut(s)	786, 1498
BspANI	GGCC	4 cut(s)	104, 490, 1699, 1726
BspCNI	CTCAG	7 cut(s)	557, 1485, 1621, 1663, 2014, 2044, 2809
BspDI	ATCGAT	1 cut(s)	1611
BspHI	TCATGA	2 cut(s)	2068, 2641
BspLI	GGNNCC	7 cut(s)	617, 721, 1114, 1533, 1875, 1900, 1901
BspPI	GGATC	9 cut(s)	12, 353, 779, 1355, 1526, 1539, 2082, 2753, 2786
BspT104I	TTCGAA	1 cut(s)	671
BspT107I	GGYRCC	2 cut(s)	615, 719
BspTNI	GGTCTC	1 cut(s)	1759
BsrBI	CCGCTC	1 cut(s)	788
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	9 cut(s)	273, 340, 1175, 1274, 1628, 1727, 1734, 2095, 2613
BssECI	CCNNGG	8 cut(s)	22, 307, 308, 468, 1425, 1536, 2471, 2590
BssT1I	CCWWGG	4 cut(s)	468, 1536, 2471, 2590
Bst2UI	CCWGG	5 cut(s)	24, 149, 309, 1427, 2280
Bst6I	CTCTTC	3 cut(s)	152, 1740, 2363
BstAPI	GCANNNNNTGC	2 cut(s)	182, 738
BstBAI	YACGTR	1 cut(s)	2689
BstBI	TTCGAA	1 cut(s)	671
BstC8I	GCNNGC	3 cut(s)	183, 1980, 2499
BstDEI	CTNAG	9 cut(s)	544, 1472, 1629, 1671, 1878, 2022, 2052, 2336, 2817
BstDSI	CCRYGG	2 cut(s)	1536, 2471
BstENI	CCTNNNNNAGG	1 cut(s)	2211
BstF5I	GGATG	7 cut(s)	476, 1421, 2275, 2299, 2317, 2508, 2525
BstMAI	GTCTC	5 cut(s)	744, 1037, 1556, 1759, 2088
BstMWI	GCNNNNNNNGC	6 cut(s)	173, 182, 738, 1026, 2609, 2726
BstNI	CCWGG	5 cut(s)	24, 149, 309, 1427, 2280
BstNSI	RCATGY	6 cut(s)	714, 1954, 1982, 1986, 2032, 2859
BstSCI	CCNGG	6 cut(s)	22, 147, 307, 917, 1425, 2278
BstSFI	CTRYAG	2 cut(s)	961, 1315
BstSLI	GKGCMC	1 cut(s)	101
BstSNI	TACGTA	1 cut(s)	2689
BstV1I	GCAGC	8 cut(s)	176, 938, 1822, 2192, 2587, 2665, 2729, 2819
BstV2I	GAAGAC	4 cut(s)	816, 2018, 2621, 2851
BstX2I	RGATCY	4 cut(s)	910, 1531, 2074, 2791
BstYI	RGATCY	4 cut(s)	910, 1531, 2074, 2791
Bsu15I	ATCGAT	1 cut(s)	1611
BsuI	GTATCC	3 cut(s)	632, 1658, 2152
BsuRI	GGCC	4 cut(s)	104, 490, 1699, 1726
BsuTUI	ATCGAT	1 cut(s)	1611
BtgI	CCRYGG	2 cut(s)	1536, 2471
BtgZI	GCGATG	1 cut(s)	79
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	7 cut(s)	476, 1421, 2275, 2299, 2317, 2508, 2525
BtsIMutI	CAGTG	9 cut(s)	95, 266, 590, 869, 1189, 1402, 1741, 2414, 2776
Cac8I	GCNNGC	3 cut(s)	183, 1980, 2499
CaiI	CAGNNNCTG	1 cut(s)	2816
CciI	TCATGA	2 cut(s)	2068, 2641
Cfr13I	GGNCC	4 cut(s)	1725, 1874, 1899, 2475
ClaI	ATCGAT	1 cut(s)	1611
CseI	GACGC	1 cut(s)	2606
Csp6I	GTAC	7 cut(s)	660, 720, 1411, 2088, 2100, 2753, 2859
CviQI	GTAC	7 cut(s)	660, 720, 1411, 2088, 2100, 2753, 2859
DdeI	CTNAG	9 cut(s)	544, 1472, 1629, 1671, 1878, 2022, 2052, 2336, 2817
DraI	TTTAAA	3 cut(s)	1459, 1710, 1827
DrdI	GACNNNNNNGTC	1 cut(s)	605
DseDI	GACNNNNNNGTC	1 cut(s)	605
EaeI	YGGCCR	2 cut(s)	102, 1697
Eam1104I	CTCTTC	3 cut(s)	152, 1740, 2363
EarI	CTCTTC	3 cut(s)	152, 1740, 2363
Ecl136II	GAGCTC	1 cut(s)	699
Eco105I	TACGTA	1 cut(s)	2689
Eco130I	CCWWGG	4 cut(s)	468, 1536, 2471, 2590
Eco24I	GRGCYC	2 cut(s)	701, 1485
Eco31I	GGTCTC	1 cut(s)	1759
Eco32I	GATATC	3 cut(s)	330, 2260, 2706
Eco47I	GGWCC	3 cut(s)	1874, 1899, 2475
Eco53kI	GAGCTC	1 cut(s)	699
Eco57I	CTGAAG	5 cut(s)	1371, 1764, 2387, 2528, 2634
EcoICRI	GAGCTC	1 cut(s)	699
EcoNI	CCTNNNNNAGG	1 cut(s)	2211
EcoO109I	RGGNCCY	2 cut(s)	1874, 1899
EcoRII	CCWGG	5 cut(s)	22, 147, 307, 1425, 2278
EcoRV	GATATC	3 cut(s)	330, 2260, 2706
EcoT14I	CCWWGG	4 cut(s)	468, 1536, 2471, 2590
EcoT22I	ATGCAT	1 cut(s)	1984
EcoT38I	GRGCYC	2 cut(s)	701, 1485
ErhI	CCWWGG	4 cut(s)	468, 1536, 2471, 2590
FalI	AAGNNNNNCTT	2 cut(s)	726, 758
FaqI	GGGAC	5 cut(s)	289, 981, 1689, 1887, 1912
FauI	CCCGC	2 cut(s)	793, 1491
FauNDI	CATATG	1 cut(s)	2143
FbaI	TGATCA	3 cut(s)	2122, 2185, 2638
FblI	GTMKAC	1 cut(s)	2549
Fnu4HI	GCNGC	8 cut(s)	165, 952, 1836, 2181, 2601, 2654, 2718, 2808
FokI	GGATG	7 cut(s)	463, 1408, 2262, 2306, 2324, 2495, 2532
FriOI	GRGCYC	2 cut(s)	701, 1485
Fsp4HI	GCNGC	8 cut(s)	165, 952, 1836, 2181, 2601, 2654, 2718, 2808
FspBI	CTAG	4 cut(s)	384, 791, 881, 1340
GluI	GCNGC	8 cut(s)	165, 952, 1836, 2181, 2601, 2654, 2718, 2808
GsaI	CCCAGC	2 cut(s)	1531, 2564
GsuI	CTGGAG	3 cut(s)	1142, 2112, 2301
HaeIII	GGCC	4 cut(s)	104, 490, 1699, 1726
HapII	CCGG	2 cut(s)	589, 919
HgaI	GACGC	1 cut(s)	2606
HindIII	AAGCTT	2 cut(s)	890, 1280
HpaII	CCGG	2 cut(s)	589, 919
HphI	GGTGA	8 cut(s)	313, 345, 1103, 1490, 1612, 2002, 2264, 2606
Hpy166II	GTNNAC	6 cut(s)	99, 232, 321, 1784, 2234, 2550
Hpy8I	GTNNAC	6 cut(s)	99, 232, 321, 1784, 2234, 2550
Hpy99I	CGWCG	1 cut(s)	2307
HpyAV	CCTTC	9 cut(s)	589, 752, 1204, 1428, 1597, 1655, 2050, 2207, 2443
HpyCH4IV	ACGT	4 cut(s)	13, 261, 2102, 2688
HpyF10VI	GCNNNNNNNGC	6 cut(s)	173, 182, 738, 1026, 2609, 2726
HpyF3I	CTNAG	9 cut(s)	544, 1472, 1629, 1671, 1878, 2022, 2052, 2336, 2817
HpySE526I	ACGT	4 cut(s)	13, 261, 2102, 2688
KflI	GGGWCCC	1 cut(s)	1899
KpnI	GGTACC	1 cut(s)	723
Ksp22I	TGATCA	3 cut(s)	2122, 2185, 2638
LmnI	GCTCC	3 cut(s)	375, 837, 1123
Lsp1109I	GCAGC	8 cut(s)	176, 938, 1822, 2192, 2587, 2665, 2729, 2819
LweI	GCATC	5 cut(s)	56, 493, 1058, 1318, 2510
MaeI	CTAG	4 cut(s)	384, 791, 881, 1340
MaeII	ACGT	4 cut(s)	13, 261, 2102, 2688
MaeIII	GTNAC	7 cut(s)	1077, 1397, 1649, 1930, 1955, 2389, 2594
MbiI	CCGCTC	1 cut(s)	788
MfeI	CAATTG	2 cut(s)	1000, 2118
MflI	RGATCY	4 cut(s)	910, 1531, 2074, 2791
MhlI	GDGCHC	4 cut(s)	101, 701, 834, 1485
MlyI	GAGTC	2 cut(s)	467, 2266
MmeI	TCCRAC	3 cut(s)	2136, 2643, 2650
Mph1103I	ATGCAT	1 cut(s)	1984
MroXI	GAANNNNTTC	4 cut(s)	317, 690, 1749, 2619
MslI	CAYNNNNRTG	4 cut(s)	104, 110, 624, 1983
MspA1I	CMGCKG	2 cut(s)	2183, 2560
MspI	CCGG	2 cut(s)	589, 919
MspR9I	CCNGG	6 cut(s)	24, 149, 309, 919, 1427, 2280
MunI	CAATTG	2 cut(s)	1000, 2118
Mva1269I	GAATGC	1 cut(s)	937
MvaI	CCWGG	5 cut(s)	24, 149, 309, 1427, 2280
MwoI	GCNNNNNNNGC	6 cut(s)	173, 182, 738, 1026, 2609, 2726
NciI	CCSGG	1 cut(s)	919
NcoI	CCATGG	2 cut(s)	1536, 2471
NdeI	CATATG	1 cut(s)	2143
NlaIV	GGNNCC	7 cut(s)	617, 721, 1114, 1533, 1875, 1900, 1901
NmuCI	GTSAC	7 cut(s)	1077, 1397, 1649, 1930, 1955, 2389, 2594
NsiI	ATGCAT	1 cut(s)	1984
NspI	RCATGY	6 cut(s)	714, 1954, 1982, 1986, 2032, 2859
NspV	TTCGAA	1 cut(s)	671
OliI	CACNNNNGTG	1 cut(s)	624
PaeI	GCATGC	1 cut(s)	1982
PagI	TCATGA	2 cut(s)	2068, 2641
PasI	CCCWGGG	1 cut(s)	308
PctI	GAATGC	1 cut(s)	937
PdmI	GAANNNNTTC	4 cut(s)	317, 690, 1749, 2619
PflFI	GACNNNGTC	2 cut(s)	605, 1371
PfoI	TCCNGGA	1 cut(s)	2278
PkrI	GCNGC	8 cut(s)	166, 953, 1837, 2182, 2602, 2655, 2719, 2809
PleI	GAGTC	2 cut(s)	467, 2266
PpsI	GAGTC	2 cut(s)	467, 2266
Ppu21I	YACGTR	1 cut(s)	2689
PpuMI	RGGWCCY	2 cut(s)	1874, 1899
PsiI	TTATAA	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	701
Psp5II	RGGWCCY	2 cut(s)	1874, 1899
Psp6I	CCWGG	5 cut(s)	22, 147, 307, 1425, 2278
PspFI	CCCAGC	2 cut(s)	1527, 2560
PspGI	CCWGG	5 cut(s)	22, 147, 307, 1425, 2278
PspN4I	GGNNCC	7 cut(s)	617, 721, 1114, 1533, 1875, 1900, 1901
PspPI	GGNCC	4 cut(s)	1725, 1874, 1899, 2475
PspPPI	RGGWCCY	2 cut(s)	1874, 1899
PstNI	CAGNNNCTG	1 cut(s)	2816
PsuI	RGATCY	4 cut(s)	910, 1531, 2074, 2791
PsyI	GACNNNGTC	2 cut(s)	605, 1371
PvuII	CAGCTG	2 cut(s)	2183, 2560
RsaI	GTAC	7 cut(s)	661, 721, 1412, 2089, 2101, 2754, 2860
RsaNI	GTAC	7 cut(s)	660, 720, 1411, 2088, 2100, 2753, 2859
RseI	CAYNNNNRTG	4 cut(s)	104, 110, 624, 1983
SacI	GAGCTC	1 cut(s)	701
SatI	GCNGC	8 cut(s)	165, 952, 1836, 2181, 2601, 2654, 2718, 2808
Sau96I	GGNCC	4 cut(s)	1725, 1874, 1899, 2475
SchI	GAGTC	2 cut(s)	467, 2266
ScrFI	CCNGG	6 cut(s)	24, 149, 309, 919, 1427, 2280
SduI	GDGCHC	4 cut(s)	101, 701, 834, 1485
SfaNI	GCATC	5 cut(s)	56, 493, 1058, 1318, 2510
SfcI	CTRYAG	2 cut(s)	961, 1315
SfuI	TTCGAA	1 cut(s)	671
SinI	GGWCC	3 cut(s)	1874, 1899, 2475
SmiMI	CAYNNNNRTG	4 cut(s)	104, 110, 624, 1983
SmlI	CTYRAG	2 cut(s)	555, 1796
SmoI	CTYRAG	2 cut(s)	555, 1796
SnaBI	TACGTA	1 cut(s)	2689
SphI	GCATGC	1 cut(s)	1982
SsiI	CCGC	2 cut(s)	786, 1498
SspMI	CTAG	4 cut(s)	384, 791, 881, 1340
SstI	GAGCTC	1 cut(s)	701
StyD4I	CCNGG	6 cut(s)	22, 147, 307, 917, 1425, 2278
StyI	CCWWGG	4 cut(s)	468, 1536, 2471, 2590
TaiI	ACGT	4 cut(s)	16, 264, 2105, 2691
TaqI	TCGA	7 cut(s)	671, 1035, 1042, 1611, 1659, 2043, 2305
TaqII	GACCGA	1 cut(s)	2342
TatI	WGTACW	2 cut(s)	1410, 2858
TscAI	CASTG	9 cut(s)	95, 273, 590, 869, 1189, 1402, 1741, 2421, 2776
TseFI	GTSAC	7 cut(s)	1077, 1397, 1649, 1930, 1955, 2389, 2594
TseI	GCWGC	8 cut(s)	164, 951, 1835, 2180, 2600, 2653, 2717, 2807
Tsp45I	GTSAC	7 cut(s)	1077, 1397, 1649, 1930, 1955, 2389, 2594
TspGWI	ACGGA	2 cut(s)	291, 2291
TspRI	CASTG	9 cut(s)	95, 273, 590, 869, 1189, 1402, 1741, 2421, 2776
Tth111I	GACNNNGTC	2 cut(s)	605, 1371
VneI	GTGCAC	1 cut(s)	97
VpaK11BI	GGWCC	3 cut(s)	1874, 1899, 2475
XagI	CCTNNNNNAGG	1 cut(s)	2211
XbaI	TCTAGA	2 cut(s)	790, 1339
XceI	RCATGY	6 cut(s)	714, 1954, 1982, 1986, 2032, 2859
XmiI	GTMKAC	1 cut(s)	2549
XmnI	GAANNNNTTC	4 cut(s)	317, 690, 1749, 2619
XspI	CTAG	4 cut(s)	384, 791, 881, 1340
Zsp2I	ATGCAT	1 cut(s)	1984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.