Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005414

Physical Location & Seq

Genomic Coordinates Forward (+)

45524989 .. 45531742

Gene Structure 6754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2868 bp

ATGGATCACCTACGTTCAACCCCTGGGAATGGCGAGGATAATGTCGGTATTCCTGATGATATGCGATGCAAGAGATCAGATGGGAAACAGTGGAGGTGCACGGCCATGTCTATGCCAGATAAAACAGTATGTGAAAAGCACTATATCCAGGCAAAGAAGAGGGCAGCTAATTCTGCAATGCGAGCTAATATGAAAAAAGCCAAGAGAAAATCGTTAGGGGAAAGTGATGTTTACTTGGAGAGTAAGAGTGATGATTTTGACGTGCCACTGGCAAGTATCAAATCAGAGGAGTTTTCTCGTCCATCCCCGGGGAAAAAGTTCACCAAGATATCAAGAAACCAGTTTCGTTATTCACCTGATCCACCACCTATGAGGAGCGTGTCTAGGCGTAATCCTCCAAATGACGAGAGAGAATCGGACGAGTATGAGGAAGATTGGAGTTCTTATAAGACACCACCTGTTTCTGCCTTGGACTCATCCATGAATAGGCCACAAAGGAGTTTTGATGCTAATGCTATGACAGTTTCGGAATCCTCTGATGGAAGCTCAGAATCCTCTCAAGAGGCTGGTGGTCAAACTTGTCATCAGTGCCGGAGGAAGGATGACACAGTCATCTGGTGCCACAGATGTGATAGACGAGGATACTGTGATAGTTGTATTCGTACATGGTATTCGAACACCCCACTGGAAGATATTCAGAGCTCTTGTCCTGCATGTTGTGGTACCTGTAATTGCAAAGTGTGCCTTCGTAGAGACAATTTAGTAAAGGTAAGGATCAGAGAGATTCCCGCTCTAGACAAGTTGCAATATCTCCATTGTCTGCTGTCTTCTGTGCTCCCTGTGGTTAAGCAAATCCATCAAGAACAGTGCTTTGAAGTAGAACTAGAAAAAAAGCTTCGTGGAAGTGATATAGATCTTGCCAGGACAAAACTGAATGCAGATGAGCAGATGTGCTGCAATTTCTGTAGGATTCCCATCATTGATTATCATTGGCATTGTCCCAATTGTGCTTATGATCTGTGCCTTAACTGCTGTCTCGATCTTCGAGAGGCATCTATGCAAGTTGTCAAAGGAGAAGTGTCACAGGAGATTGGTGATGAAAATCAAGAAAAGGGAACCGTGCTGGAGCAGTTGCCCAAAGTCAGACTAAATTTTTCAGAAAAGTTCTCTGACTGGAAAGCGAACAGTGATGGCAGTATTCCTTGCCCCCCGAAGGAGTATGGTGGCTGTGGTTACTCAACATTGAGTTTAAGTCGTATCTTTAAGATGAACTGGGTTGCAAAGCTTGTCAAGAATGTGGAGGAAATGGTTAGTGGCTGTAGGGTTAATGATGCTGACAATCTAGAGAAAACTGAAGTTAATGATCCAAGACTTTGTCAGTATGCCCATAGAGAGGACAGTGACAATTTCTTGTACTGCCCTTCATCCCAGGATATTAAATCTGATGGGATTGCCAATTTTAAAAGACATTGGCTCAGGGGTGAGCCCATCATTGTAAAGCGGGTATTTGATAGCTCATCAGTTTCAAGCTGGGATCCCATGGTTATATGGAGAGGGATTCGGGAGACAACAGATGAAAAATCAAAAGATCATAACAGAAAGGTGAAGGCTATCGATTGCTATGACTGGTCTGAGGTTGATATTGAGGTTGGTCACTTCATCGAAGGATACTCTGAGGGACAAATTTATGAAAATGGTCGGCCAAAAATTTTAAAATTAAAAGACTGGCCCTCTCCCAGTGCATCTGAAGAGTTTCTATTGTATCAGAGACCTGAATTTATCAGTAAACTGCCTTTACTTGAGTATATTCACTCCAAGTTTGGTCTTTTAAATGTTGCTGCAAAATTGCCACATTATTCTTTGCAAAATGATGTGGGACCTAAGATTTTCATATCTTATGGGACCCATGAGGAACTTGATAGAGGCAATTCTGTGACCAATCTTCATTTCAACATGCGTGACATGGTATATTTGCTGGTGCATGCATGTGAGCTGAAGCAAAAAGGTCGGCAGAAGACAAAAACTGAGAACGTGCAAAAACCCTTCGAGGAATCTGAGGTTAAAGAATCTCATGAGGATCTGGAAATGGGTACTGGAGACGGTACGTTCCCTGATCTATCAATTGATCAGAATGAGGAGAATCCATATGAGGCAAGGTTGGATACAGATAAAGTTGATAGTGCAGCTGATCATGGGATTGAAACTACTCCTGTTGAAGGGAATACCATCAGTTGTGAACAGTCAGAGAAAGAGGGTGATGATATCTCTCAAAAGACTCATCCTGGAGTTCTTTGGGATGTTTTCCGTCGAAAGGATGTTCCAAAGCTGACCGAGTATCTAAGAATACATGGGGAAGAATTTGGGAAGCTGAAGAGTGAAACAAACAACTTTGTAACAAGACCTCTTTATGATGAAACACTGTTCCTGAATGAAAATCACAAAAGAAAATTGAAGGAAGAATTTGGGGTAGAGCCATGGTCCTTTGAACAGAATTTGGGGCAAGCTGTATTCATCCCTGCTGGATGCCCGTTTCAAGTCAGGAATCTTCAGTCTACGGTTCAGCTGGGTCTTGATTTCTTATCTCCTGAAAGCCTTGGTGAAGCTGCAAGACTGGCTGAAGAAATTCGCTGTCTTCCAAATGATCATGAAGCAAAGCAGCAAGTGTTGGAGGTTGGACAAGGGAAATTTTACGTAGAAGTAGGAAAGATATCACTTTATGCAGCAAGTTCAGCTATTAAAGAAATTCAGAAATTGGTACTTGATCCAAAATTCAGTGGAGAGCTTCGGTTTGAAGATCCAAATTTGACTGCAGCAGTTTCTGAGAATTTGGAGAAAATTACCAAGCGAAGACAGATAGCATGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03010 ko04714 map03010 map04714

Pfam Domains

Protein Families

JmjC WRC zf-4CXXC_R1

Protein Analysis

955

Amino Acids

108.94

Weight (kDa)

5.59

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRC	PF08879	18 - 58	4.7e-14	WRC
zf-4CXXC_R1	PF10497	189 - 255	2.3e-06	Zinc-finger domain of monoamine-oxidase A repressor R1
JmjC	PF02373	763 - 855	3.2e-08	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09060 AT1G09060 AT1G09060 AT1G09060
fragaria_vesca	FvH4_6g06290 FvH4_6g06290 FvH4_6g06290 FvH4_6g06290
malus_domestica	MD04G1202800.v1.1 MD12G1216600.v1.1
prunus_persica	Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1
pyrus_communis	pycom04g17890 pycom12g20210
rosa_chinensis	RchiOBHm_Chr3g0455331
rosa_laevigata	RLG00000025369
rosa_multiflora	Rmu_sc0002169.1_g000043
rosa_roxburghii	Rroxscaffold_6G00424370
rosa_rugosa	Rorug03G0006300 Rorug03G0006400 Rorug03G0006500
rosa_samantha	Rh3AG066100 Rh3BG068300 Rh3CG066700 Rh3DG068200
rosa_wichuraiana	Rw3G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
Acc65I	GGTACC	1 cut(s)	722
AccB1I	GGYRCC	2 cut(s)	618, 722
AccBSI	CCGCTC	1 cut(s)	791
AccI	GTMKAC	1 cut(s)	2552
AciI	CCGC	2 cut(s)	789, 1501
AclWI	GGATC	9 cut(s)	12, 353, 782, 1358, 1529, 1542, 2085, 2756, 2789
AcoI	YGGCCR	2 cut(s)	102, 1700
AcuI	CTGAAG	6 cut(s)	1374, 1767, 2015, 2390, 2531, 2637
AfaI	GTAC	7 cut(s)	664, 724, 1415, 2092, 2104, 2757, 2863
AfiI	CCNNNNNNNGG	8 cut(s)	29, 308, 486, 598, 1213, 1393, 2216, 2311
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	5 cut(s)	22, 147, 920, 1428, 2281
AjuI	GAANNNNNNNTTGG	2 cut(s)	1931, 1963
AleI	CACNNNNGTG	1 cut(s)	627
Alw21I	GWGCWC	3 cut(s)	101, 704, 837
Alw26I	GTCTC	5 cut(s)	747, 1040, 1559, 1762, 2091
Alw44I	GTGCAC	1 cut(s)	97
AlwI	GGATC	9 cut(s)	12, 353, 782, 1358, 1529, 1542, 2085, 2756, 2789
AlwNI	CAGNNNCTG	1 cut(s)	2819
Ama87I	CYCGRG	1 cut(s)	307
AoxI	GGCC	4 cut(s)	102, 488, 1700, 1727
ApaLI	GTGCAC	1 cut(s)	97
ApeKI	GCWGC	8 cut(s)	164, 954, 1838, 2183, 2603, 2656, 2720, 2810
Asp700I	GAANNNNTTC	4 cut(s)	317, 693, 1752, 2622
Asp718I	GGTACC	1 cut(s)	722
AspS9I	GGNCC	4 cut(s)	1728, 1877, 1902, 2478
AsuC2I	CCSGG	2 cut(s)	308, 309
AsuHPI	GGTGA	7 cut(s)	313, 345, 1106, 1493, 1615, 2267, 2609
AsuII	TTCGAA	1 cut(s)	674
AvaI	CYCGRG	1 cut(s)	307
AvaII	GGWCC	3 cut(s)	1877, 1902, 2478
BaeGI	GKGCMC	1 cut(s)	101
BamHI	GGATCC	1 cut(s)	1534
BanI	GGYRCC	2 cut(s)	618, 722
BanII	GRGCYC	2 cut(s)	704, 1488
BbsI	GAAGAC	4 cut(s)	819, 2021, 2624, 2854
Bbv12I	GWGCWC	3 cut(s)	101, 704, 837
BbvI	GCAGC	8 cut(s)	176, 941, 1825, 2195, 2590, 2668, 2732, 2822
BccI	CCATC	9 cut(s)	74, 310, 533, 864, 983, 1184, 1439, 1496, 2234
BceAI	ACGGC	1 cut(s)	117
BcgI	CGANNNNNNTGC	2 cut(s)	1988, 2022
BciT130I	CCWGG	5 cut(s)	24, 149, 922, 1430, 2283
BciVI	GTATCC	3 cut(s)	635, 1661, 2155
BclI	TGATCA	3 cut(s)	2125, 2188, 2641
BcnI	CCSGG	2 cut(s)	308, 309
BcoDI	GTCTC	5 cut(s)	747, 1040, 1559, 1762, 2091
BfaI	CTAG	4 cut(s)	384, 794, 884, 1343
BfmI	CTRYAG	3 cut(s)	964, 1318, 2808
BfuI	GTATCC	3 cut(s)	635, 1661, 2155
BglII	AGATCT	1 cut(s)	913
BisI	GCNGC	8 cut(s)	165, 955, 1839, 2184, 2604, 2657, 2721, 2811
BlsI	GCNGC	8 cut(s)	166, 956, 1840, 2185, 2605, 2658, 2722, 2812
Bme1390I	CCNGG	7 cut(s)	24, 149, 308, 309, 922, 1430, 2283
Bme18I	GGWCC	3 cut(s)	1877, 1902, 2478
BmeT110I	CYCGRG	1 cut(s)	307
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	4 cut(s)	1728, 1877, 1902, 2478
BmiI	GGNNCC	7 cut(s)	620, 724, 1117, 1536, 1878, 1903, 1904
BmrFI	CCNGG	7 cut(s)	24, 149, 308, 309, 922, 1430, 2283
BmrI	ACTGGG	2 cut(s)	1282, 1731
BmsI	GCATC	6 cut(s)	56, 496, 1061, 1321, 1751, 2513
BmuI	ACTGGG	2 cut(s)	1282, 1731
BpiI	GAAGAC	4 cut(s)	819, 2021, 2624, 2854
BpmI	CTGGAG	3 cut(s)	1145, 2115, 2304
Bpu10I	CCTNAGC	1 cut(s)	1475
Bpu14I	TTCGAA	1 cut(s)	674
BpuEI	CTTGAG	2 cut(s)	543, 1820
BpuMI	CCSGG	2 cut(s)	308, 309
Bsa29I	ATCGAT	1 cut(s)	1614
BsaAI	YACGTR	1 cut(s)	2692
BsaBI	GATNNNNATC	3 cut(s)	912, 974, 1101
BsaI	GGTCTC	1 cut(s)	1762
Bsc4I	CCNNNNNNNGG	8 cut(s)	29, 308, 486, 598, 1213, 1393, 2216, 2311
Bse3DI	GCAATG	1 cut(s)	183
Bse8I	GATNNNNATC	3 cut(s)	912, 974, 1101
BseBI	CCWGG	5 cut(s)	24, 149, 922, 1430, 2283
BseCI	ATCGAT	1 cut(s)	1614
BseGI	GGATG	9 cut(s)	302, 476, 607, 1424, 2278, 2302, 2320, 2511, 2528
BseJI	GATNNNNATC	3 cut(s)	912, 974, 1101
BseLI	CCNNNNNNNGG	8 cut(s)	29, 308, 486, 598, 1213, 1393, 2216, 2311
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	7 cut(s)	561, 1489, 1623, 1665, 2016, 2046, 2811
BseRI	GAGGAG	3 cut(s)	302, 388, 2150
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	8 cut(s)	176, 941, 1825, 2195, 2590, 2668, 2732, 2822
BseYI	CCCAGC	2 cut(s)	1530, 2563
BsgI	GTGCAG	1 cut(s)	2202
BshFI	GGCC	4 cut(s)	104, 490, 1702, 1729
BshNI	GGYRCC	2 cut(s)	618, 722
BshVI	ATCGAT	1 cut(s)	1614
BsiHKAI	GWGCWC	3 cut(s)	101, 704, 837
BsiHKCI	CYCGRG	1 cut(s)	307
BsiSI	CCGG	2 cut(s)	308, 592
BslFI	GGGAC	4 cut(s)	984, 1692, 1890, 1915
BslI	CCNNNNNNNGG	8 cut(s)	29, 308, 486, 598, 1213, 1393, 2216, 2311
BsmAI	GTCTC	5 cut(s)	747, 1040, 1559, 1762, 2091
BsmBI	CGTCTC	1 cut(s)	2091
BsmFI	GGGAC	4 cut(s)	984, 1692, 1890, 1915
BsmI	GAATGC	1 cut(s)	940
BsnI	GGCC	4 cut(s)	104, 490, 1702, 1729
Bso31I	GGTCTC	1 cut(s)	1762
BsoBI	CYCGRG	1 cut(s)	307
Bsp119I	TTCGAA	1 cut(s)	674
Bsp1286I	GDGCHC	4 cut(s)	101, 704, 837, 1488
Bsp19I	CCATGG	2 cut(s)	1539, 2474
BspACI	CCGC	2 cut(s)	789, 1501
BspANI	GGCC	4 cut(s)	104, 490, 1702, 1729
BspCNI	CTCAG	7 cut(s)	560, 1488, 1624, 1666, 2017, 2047, 2812
BspDI	ATCGAT	1 cut(s)	1614
BspHI	TCATGA	2 cut(s)	2071, 2644
BspLI	GGNNCC	7 cut(s)	620, 724, 1117, 1536, 1878, 1903, 1904
BspMAI	CTGCAG	1 cut(s)	2812
BspPI	GGATC	9 cut(s)	12, 353, 782, 1358, 1529, 1542, 2085, 2756, 2789
BspT104I	TTCGAA	1 cut(s)	674
BspT107I	GGYRCC	2 cut(s)	618, 722
BspTNI	GGTCTC	1 cut(s)	1762
BsrBI	CCGCTC	1 cut(s)	791
BsrDI	GCAATG	1 cut(s)	183
BssT1I	CCWWGG	4 cut(s)	468, 1539, 2474, 2593
Bst2UI	CCWGG	5 cut(s)	24, 149, 922, 1430, 2283
Bst6I	CTCTTC	3 cut(s)	152, 1743, 2366
BstAPI	GCANNNNNTGC	1 cut(s)	741
BstBAI	YACGTR	1 cut(s)	2692
BstBI	TTCGAA	1 cut(s)	674
BstC8I	GCNNGC	3 cut(s)	183, 1983, 2502
BstDEI	CTNAG	9 cut(s)	547, 1475, 1632, 1674, 1881, 2025, 2055, 2339, 2820
BstDSI	CCRYGG	2 cut(s)	1539, 2474
BstENI	CCTNNNNNAGG	1 cut(s)	2214
BstF5I	GGATG	9 cut(s)	302, 476, 607, 1424, 2278, 2302, 2320, 2511, 2528
BstMAI	GTCTC	5 cut(s)	747, 1040, 1559, 1762, 2091
BstMWI	GCNNNNNNNGC	6 cut(s)	173, 182, 741, 1029, 2612, 2729
BstNI	CCWGG	5 cut(s)	24, 149, 922, 1430, 2283
BstNSI	RCATGY	5 cut(s)	717, 1957, 1985, 1989, 2862
BstSCI	CCNGG	7 cut(s)	22, 147, 306, 307, 920, 1428, 2281
BstSFI	CTRYAG	3 cut(s)	964, 1318, 2808
BstSLI	GKGCMC	1 cut(s)	101
BstSNI	TACGTA	1 cut(s)	2692
BstV1I	GCAGC	8 cut(s)	176, 941, 1825, 2195, 2590, 2668, 2732, 2822
BstV2I	GAAGAC	4 cut(s)	819, 2021, 2624, 2854
BstX2I	RGATCY	4 cut(s)	913, 1534, 2077, 2794
BstYI	RGATCY	4 cut(s)	913, 1534, 2077, 2794
Bsu15I	ATCGAT	1 cut(s)	1614
BsuI	GTATCC	3 cut(s)	635, 1661, 2155
BsuRI	GGCC	4 cut(s)	104, 490, 1702, 1729
BsuTUI	ATCGAT	1 cut(s)	1614
BtgI	CCRYGG	2 cut(s)	1539, 2474
BtgZI	GCGATG	1 cut(s)	79
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	9 cut(s)	302, 476, 607, 1424, 2278, 2302, 2320, 2511, 2528
Cac8I	GCNNGC	3 cut(s)	183, 1983, 2502
CaiI	CAGNNNCTG	1 cut(s)	2819
CciI	TCATGA	2 cut(s)	2071, 2644
Cfr13I	GGNCC	4 cut(s)	1728, 1877, 1902, 2478
Cfr9I	CCCGGG	1 cut(s)	307
ClaI	ATCGAT	1 cut(s)	1614
Csp6I	GTAC	7 cut(s)	663, 723, 1414, 2091, 2103, 2756, 2862
CviQI	GTAC	7 cut(s)	663, 723, 1414, 2091, 2103, 2756, 2862
DdeI	CTNAG	9 cut(s)	547, 1475, 1632, 1674, 1881, 2025, 2055, 2339, 2820
DraI	TTTAAA	3 cut(s)	1462, 1713, 1830
EaeI	YGGCCR	2 cut(s)	102, 1700
Eam1104I	CTCTTC	3 cut(s)	152, 1743, 2366
EarI	CTCTTC	3 cut(s)	152, 1743, 2366
Ecl136II	GAGCTC	1 cut(s)	702
Eco105I	TACGTA	1 cut(s)	2692
Eco130I	CCWWGG	4 cut(s)	468, 1539, 2474, 2593
Eco24I	GRGCYC	2 cut(s)	704, 1488
Eco31I	GGTCTC	1 cut(s)	1762
Eco32I	GATATC	3 cut(s)	330, 2263, 2709
Eco47I	GGWCC	3 cut(s)	1877, 1902, 2478
Eco53kI	GAGCTC	1 cut(s)	702
Eco57I	CTGAAG	6 cut(s)	1374, 1767, 2015, 2390, 2531, 2637
Eco88I	CYCGRG	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	702
EcoNI	CCTNNNNNAGG	1 cut(s)	2214
EcoO109I	RGGNCCY	2 cut(s)	1877, 1902
EcoRII	CCWGG	5 cut(s)	22, 147, 920, 1428, 2281
EcoRV	GATATC	3 cut(s)	330, 2263, 2709
EcoT14I	CCWWGG	4 cut(s)	468, 1539, 2474, 2593
EcoT22I	ATGCAT	1 cut(s)	1987
EcoT38I	GRGCYC	2 cut(s)	704, 1488
ErhI	CCWWGG	4 cut(s)	468, 1539, 2474, 2593
Esp3I	CGTCTC	1 cut(s)	2091
FalI	AAGNNNNNCTT	2 cut(s)	729, 761
FaqI	GGGAC	4 cut(s)	984, 1692, 1890, 1915
FauI	CCCGC	2 cut(s)	796, 1494
FauNDI	CATATG	1 cut(s)	2146
FbaI	TGATCA	3 cut(s)	2125, 2188, 2641
FblI	GTMKAC	1 cut(s)	2552
Fnu4HI	GCNGC	8 cut(s)	165, 955, 1839, 2184, 2604, 2657, 2721, 2811
FokI	GGATG	9 cut(s)	289, 463, 614, 1411, 2265, 2309, 2327, 2498, 2535
FriOI	GRGCYC	2 cut(s)	704, 1488
Fsp4HI	GCNGC	8 cut(s)	165, 955, 1839, 2184, 2604, 2657, 2721, 2811
FspBI	CTAG	4 cut(s)	384, 794, 884, 1343
GluI	GCNGC	8 cut(s)	165, 955, 1839, 2184, 2604, 2657, 2721, 2811
GsaI	CCCAGC	2 cut(s)	1534, 2567
GsuI	CTGGAG	3 cut(s)	1145, 2115, 2304
HaeIII	GGCC	4 cut(s)	104, 490, 1702, 1729
HapII	CCGG	2 cut(s)	308, 592
HindIII	AAGCTT	2 cut(s)	893, 1283
HpaII	CCGG	2 cut(s)	308, 592
HphI	GGTGA	7 cut(s)	313, 345, 1106, 1493, 1615, 2267, 2609
Hpy166II	GTNNAC	6 cut(s)	99, 232, 321, 1787, 2237, 2553
Hpy8I	GTNNAC	6 cut(s)	99, 232, 321, 1787, 2237, 2553
Hpy99I	CGWCG	1 cut(s)	2310
HpyAV	CCTTC	9 cut(s)	592, 755, 1207, 1431, 1600, 1658, 2053, 2210, 2446
HpyCH4IV	ACGT	5 cut(s)	13, 261, 2031, 2105, 2691
HpyF10VI	GCNNNNNNNGC	6 cut(s)	173, 182, 741, 1029, 2612, 2729
HpyF3I	CTNAG	9 cut(s)	547, 1475, 1632, 1674, 1881, 2025, 2055, 2339, 2820
HpySE526I	ACGT	5 cut(s)	13, 261, 2031, 2105, 2691
KflI	GGGWCCC	1 cut(s)	1902
KpnI	GGTACC	1 cut(s)	726
Ksp22I	TGATCA	3 cut(s)	2125, 2188, 2641
LmnI	GCTCC	3 cut(s)	375, 840, 1126
Lsp1109I	GCAGC	8 cut(s)	176, 941, 1825, 2195, 2590, 2668, 2732, 2822
LweI	GCATC	6 cut(s)	56, 496, 1061, 1321, 1751, 2513
MaeI	CTAG	4 cut(s)	384, 794, 884, 1343
MaeII	ACGT	5 cut(s)	13, 261, 2031, 2105, 2691
MaeIII	GTNAC	7 cut(s)	1080, 1232, 1400, 1652, 1933, 1958, 2392
MbiI	CCGCTC	1 cut(s)	791
MfeI	CAATTG	2 cut(s)	1003, 2121
MflI	RGATCY	4 cut(s)	913, 1534, 2077, 2794
MhlI	GDGCHC	4 cut(s)	101, 704, 837, 1488
MlyI	GAGTC	2 cut(s)	467, 2269
MmeI	TCCRAC	3 cut(s)	2139, 2646, 2653
Mph1103I	ATGCAT	1 cut(s)	1987
MroXI	GAANNNNTTC	4 cut(s)	317, 693, 1752, 2622
MslI	CAYNNNNRTG	4 cut(s)	104, 110, 627, 1986
MspA1I	CMGCKG	2 cut(s)	2186, 2563
MspI	CCGG	2 cut(s)	308, 592
MspR9I	CCNGG	7 cut(s)	24, 149, 308, 309, 922, 1430, 2283
MunI	CAATTG	2 cut(s)	1003, 2121
Mva1269I	GAATGC	1 cut(s)	940
MvaI	CCWGG	5 cut(s)	24, 149, 922, 1430, 2283
MwoI	GCNNNNNNNGC	6 cut(s)	173, 182, 741, 1029, 2612, 2729
NciI	CCSGG	2 cut(s)	308, 309
NcoI	CCATGG	2 cut(s)	1539, 2474
NdeI	CATATG	1 cut(s)	2146
NlaIV	GGNNCC	7 cut(s)	620, 724, 1117, 1536, 1878, 1903, 1904
NmuCI	GTSAC	5 cut(s)	1080, 1400, 1652, 1933, 1958
NsiI	ATGCAT	1 cut(s)	1987
NspI	RCATGY	5 cut(s)	717, 1957, 1985, 1989, 2862
NspV	TTCGAA	1 cut(s)	674
OliI	CACNNNNGTG	1 cut(s)	627
PaeI	GCATGC	1 cut(s)	1985
PagI	TCATGA	2 cut(s)	2071, 2644
PasI	CCCWGGG	1 cut(s)	23
PctI	GAATGC	1 cut(s)	940
PdmI	GAANNNNTTC	4 cut(s)	317, 693, 1752, 2622
PflFI	GACNNNGTC	2 cut(s)	608, 1374
PfoI	TCCNGGA	1 cut(s)	2281
PkrI	GCNGC	8 cut(s)	166, 956, 1840, 2185, 2605, 2658, 2722, 2812
PleI	GAGTC	2 cut(s)	467, 2269
PpsI	GAGTC	2 cut(s)	467, 2269
Ppu21I	YACGTR	1 cut(s)	2692
PpuMI	RGGWCCY	2 cut(s)	1877, 1902
PsiI	TTATAA	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	704
Psp5II	RGGWCCY	2 cut(s)	1877, 1902
Psp6I	CCWGG	5 cut(s)	22, 147, 920, 1428, 2281
PspFI	CCCAGC	2 cut(s)	1530, 2563
PspGI	CCWGG	5 cut(s)	22, 147, 920, 1428, 2281
PspN4I	GGNNCC	7 cut(s)	620, 724, 1117, 1536, 1878, 1903, 1904
PspPI	GGNCC	4 cut(s)	1728, 1877, 1902, 2478
PspPPI	RGGWCCY	2 cut(s)	1877, 1902
PstI	CTGCAG	1 cut(s)	2812
PstNI	CAGNNNCTG	1 cut(s)	2819
PsuI	RGATCY	4 cut(s)	913, 1534, 2077, 2794
PsyI	GACNNNGTC	2 cut(s)	608, 1374
PvuII	CAGCTG	2 cut(s)	2186, 2563
RsaI	GTAC	7 cut(s)	664, 724, 1415, 2092, 2104, 2757, 2863
RsaNI	GTAC	7 cut(s)	663, 723, 1414, 2091, 2103, 2756, 2862
RseI	CAYNNNNRTG	4 cut(s)	104, 110, 627, 1986
SacI	GAGCTC	1 cut(s)	704
SatI	GCNGC	8 cut(s)	165, 955, 1839, 2184, 2604, 2657, 2721, 2811
Sau96I	GGNCC	4 cut(s)	1728, 1877, 1902, 2478
SchI	GAGTC	2 cut(s)	467, 2269
ScrFI	CCNGG	7 cut(s)	24, 149, 308, 309, 922, 1430, 2283
SduI	GDGCHC	4 cut(s)	101, 704, 837, 1488
SfaNI	GCATC	6 cut(s)	56, 496, 1061, 1321, 1751, 2513
SfcI	CTRYAG	3 cut(s)	964, 1318, 2808
SfuI	TTCGAA	1 cut(s)	674
SinI	GGWCC	3 cut(s)	1877, 1902, 2478
SmaI	CCCGGG	1 cut(s)	309
SmiMI	CAYNNNNRTG	4 cut(s)	104, 110, 627, 1986
SmlI	CTYRAG	2 cut(s)	558, 1799
SmoI	CTYRAG	2 cut(s)	558, 1799
SnaBI	TACGTA	1 cut(s)	2692
SphI	GCATGC	1 cut(s)	1985
SsiI	CCGC	2 cut(s)	789, 1501
SspMI	CTAG	4 cut(s)	384, 794, 884, 1343
SstI	GAGCTC	1 cut(s)	704
StyD4I	CCNGG	7 cut(s)	22, 147, 306, 307, 920, 1428, 2281
StyI	CCWWGG	4 cut(s)	468, 1539, 2474, 2593
TaiI	ACGT	5 cut(s)	16, 264, 2034, 2108, 2694
TaqI	TCGA	7 cut(s)	674, 1038, 1045, 1614, 1662, 2046, 2308
TaqII	GACCGA	1 cut(s)	2345
TatI	WGTACW	2 cut(s)	1413, 2861
TseFI	GTSAC	5 cut(s)	1080, 1400, 1652, 1933, 1958
TseI	GCWGC	8 cut(s)	164, 954, 1838, 2183, 2603, 2656, 2720, 2810
Tsp45I	GTSAC	5 cut(s)	1080, 1400, 1652, 1933, 1958
TspGWI	ACGGA	1 cut(s)	2294
TspMI	CCCGGG	1 cut(s)	307
Tth111I	GACNNNGTC	2 cut(s)	608, 1374
VneI	GTGCAC	1 cut(s)	97
VpaK11BI	GGWCC	3 cut(s)	1877, 1902, 2478
XagI	CCTNNNNNAGG	1 cut(s)	2214
XbaI	TCTAGA	2 cut(s)	793, 1342
XceI	RCATGY	5 cut(s)	717, 1957, 1985, 1989, 2862
XmaI	CCCGGG	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	2552
XmnI	GAANNNNTTC	4 cut(s)	317, 693, 1752, 2622
XspI	CTAG	4 cut(s)	384, 794, 884, 1343
Zsp2I	ATGCAT	1 cut(s)	1987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.