Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005510

Physical Location & Seq

Genomic Coordinates Reverse (-)

22802363 .. 22809235

Gene Structure 6873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGAGCGTCATCTTCGACCTGTGCGCAGCTCGACGGCCATCTTATGTCCCTTAAAGTCTCTAATTACTAAACTGCCACTGTTACTGCAAAAGCCCACTTCCTCTCCTTGCCGTTTCTCCTCCTACACTTGCCCTTCCTCTAAACAGCTTTCTACCTCTTATCCACTTCGTCCTGCAGTTTTACTGGCGAAGCCGGAGAGCCAAGCAAGCAGCGGGGTCAACATCGACGCAAGAGAATGGGCAATGCAAGATTTTTATTTCTTAAGAAAGGATGTAGAAATTGCCGCAATACGCGTTAAAGAGATAAGAAACTCTGCTTGTCTGCACAAGTTAGAGCAAGAAGTTGCTGATTTGGAGTTGAAAGCAGCTGATACCGCCTTTTGGGATGATCGAGCTCAGGCTCAAGAAAACGTTTCAGCCCTGACTGATGTCAAAGACAGGATAAAATTGCTGAATGAGTTCAAATCACAGGTTGAAGATGTAGAAACAATAGTCAAGCTAACTGAAGAGATGGACTCCATAGACCATGGACTTCTTGAAGAGGCTGCCAGTATCATCAAAGAATTGAACATGGGAATGGATAGGTTTGAGTTAACTCAACTTCTTTCTGGGCCTTACGACAAAGAAGGTGTTGTCATCTTTATTACAGCCGGTGCTGGAGGTACTGATGCACAGGACTGGGCTGAAATGTTACTCAGGATGTATGTGAGGTGGGCAGAAAAGCAGAGATACAAGACACGAGTAGTTGAGAAATCACAGGGAGAGGAAGCTGGAATTAAGTCAGCGACAATTGAAGTTGAAGGTCGTTATGCTTTGGGTATTTGTTGGGGGAGAAAGGAACACACCGCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006412 GO:0006415 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

285

Amino Acids

31.98

Weight (kDa)

5.6

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	111 - 272	3.3e-35	PCRF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36170 AT5G36170 AT5G36170 AT5G36170
fragaria_vesca	FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190 FvH4_6g00190
malus_domestica	MD04G1247400.v1.1 MD12G1263000.v1.1
prunus_persica	Prupe.6G363800_v2.0.a1 Prupe.6G363800_v2.0.a1
pyrus_communis	pycom04g21810
rosa_chinensis	RchiOBHm_Chr3g0447561
rosa_laevigata	RLG00000025989
rosa_multiflora	Rmu_co8330713.1_g000001 Rmu_co8444065.1_g000001 Rmu_sc0031754.1_g000001 Rmu_sc0037294.1_g000002
rosa_roxburghii	Rroxscaffold_6G00425770
rosa_rugosa	Rorug02G0602900
rosa_samantha	Rh3AG003200 Rh3BG002700 Rh3CG003000 Rh3DG003000
rosa_wichuraiana	Rw3G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	26
AccII	CGCG	1 cut(s)	294
AciI	CCGC	4 cut(s)	213, 285, 375, 846
AclI	AACGTT	1 cut(s)	411
AcoI	YGGCCR	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	525
AfaI	GTAC	1 cut(s)	664
AfiI	CCNNNNNNNGG	1 cut(s)	381
AflII	CTTAAG	1 cut(s)	262
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	7 cut(s)	361, 463, 476, 539, 568, 794, 800
AluBI	AGCT	6 cut(s)	30, 148, 368, 395, 499, 770
AluI	AGCT	6 cut(s)	30, 148, 368, 395, 499, 770
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	63
AoxI	GGCC	2 cut(s)	36, 611
ApeKI	GCWGC	4 cut(s)	27, 210, 365, 545
Asp700I	GAANNNNTTC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	611
BanII	GRGCYC	1 cut(s)	397
BauI	CACGAG	1 cut(s)	738
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	4 cut(s)	39, 222, 377, 532
BccI	CCATC	2 cut(s)	47, 505
BceAI	ACGGC	2 cut(s)	51, 96
BcoDI	GTCTC	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	174
BfrI	CTTAAG	1 cut(s)	262
BisI	GCNGC	5 cut(s)	28, 211, 285, 366, 546
BlsI	GCNGC	5 cut(s)	29, 212, 286, 367, 547
BmgT120I	GGNCC	1 cut(s)	611
BmrI	ACTGGG	1 cut(s)	688
BmsI	GCATC	1 cut(s)	658
BmuI	ACTGGG	1 cut(s)	688
BoxI	GACNNNNGTC	1 cut(s)	428
BplI	GAGNNNNNCTC	2 cut(s)	500, 532
BpmI	CTGGAG	1 cut(s)	678
Bpu10I	CCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	526
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse118I	RCCGGY	1 cut(s)	650
Bse1I	ACTGG	3 cut(s)	189, 549, 683
Bse3DI	GCAATG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	3 cut(s)	277, 391, 705
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	2 cut(s)	410, 709
BseNI	ACTGG	3 cut(s)	189, 549, 683
BseRI	GAGGAG	1 cut(s)	109
BseXI	GCAGC	4 cut(s)	39, 222, 377, 532
BsgI	GTGCAG	1 cut(s)	308
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	2 cut(s)	38, 613
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	2 cut(s)	194, 651
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	38, 613
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	1 cut(s)	388
Bsp19I	CCATGG	1 cut(s)	526
BspACI	CCGC	4 cut(s)	213, 285, 375, 846
BspANI	GGCC	2 cut(s)	38, 613
BspCNI	CTCAG	2 cut(s)	409, 708
BspFNI	CGCG	1 cut(s)	294
BspMAI	CTGCAG	1 cut(s)	178
BspTI	CTTAAG	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	650
BsrI	ACTGG	3 cut(s)	189, 549, 683
BssAI	RCCGGY	1 cut(s)	650
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	1 cut(s)	388
BssSI	CACGAG	1 cut(s)	738
BssT1I	CCWWGG	1 cut(s)	526
Bst2BI	CACGAG	1 cut(s)	738
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	2 cut(s)	501, 534
BstAFI	CTTAAG	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	2 cut(s)	396, 695
BstDSI	CCRYGG	1 cut(s)	526
BstF5I	GGATG	3 cut(s)	277, 391, 705
BstFNI	CGCG	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 374
BstPAI	GACNNNNGTC	1 cut(s)	428
BstSFI	CTRYAG	1 cut(s)	174
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	4 cut(s)	39, 222, 377, 532
BsuRI	GGCC	2 cut(s)	38, 613
BtgI	CCRYGG	1 cut(s)	526
BtsCI	GGATG	3 cut(s)	277, 391, 705
BtsIMutI	CAGTG	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	208
CfoI	GCGC	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	650
Cfr13I	GGNCC	1 cut(s)	611
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	663
CviAII	CATG	2 cut(s)	527, 571
CviQI	GTAC	1 cut(s)	663
DdeI	CTNAG	2 cut(s)	396, 695
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	2 cut(s)	501, 534
EarI	CTCTTC	2 cut(s)	501, 534
Ecl136II	GAGCTC	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	526
Eco24I	GRGCYC	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	525
EcoICRI	GAGCTC	1 cut(s)	395
EcoT14I	CCWWGG	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	526
FaeI	CATG	2 cut(s)	530, 574
FaiI	YATR	6 cut(s)	46, 521, 528, 572, 705, 810
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	2 cut(s)	526, 570
FauI	CCCGC	1 cut(s)	206
Fnu4HI	GCNGC	5 cut(s)	28, 211, 285, 366, 546
FokI	GGATG	3 cut(s)	284, 398, 712
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	5 cut(s)	28, 211, 285, 366, 546
FspI	TGCGCA	1 cut(s)	26
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	5 cut(s)	28, 211, 285, 366, 546
GsuI	CTGGAG	1 cut(s)	678
HaeIII	GGCC	2 cut(s)	38, 613
HapII	CCGG	2 cut(s)	194, 651
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	2 cut(s)	530, 574
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HincII	GTYRAC	2 cut(s)	220, 594
HindII	GTYRAC	2 cut(s)	220, 594
HinfI	GANTC	1 cut(s)	515
HpaI	GTTAAC	1 cut(s)	594
HpaII	CCGG	2 cut(s)	194, 651
Hpy166II	GTNNAC	2 cut(s)	220, 594
Hpy188III	TCNNGA	3 cut(s)	404, 536, 697
Hpy8I	GTNNAC	2 cut(s)	220, 594
Hpy99I	CGWCG	2 cut(s)	37, 230
HpyAV	CCTTC	3 cut(s)	144, 620, 794
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	5 cut(s)	88, 176, 247, 325, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 374
HpyF3I	CTNAG	2 cut(s)	396, 695
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	2 cut(s)	530, 574
HspAI	GCGC	1 cut(s)	25
KspAI	GTTAAC	1 cut(s)	594
Kzo9I	GATC	1 cut(s)	388
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	4 cut(s)	39, 222, 377, 532
LweI	GCATC	1 cut(s)	658
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	2 cut(s)	81, 690
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	4 cut(s)	5, 488, 518, 551
MfeI	CAATTG	1 cut(s)	789
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	6 cut(s)	63, 279, 446, 563, 774, 789
MluI	ACGCGT	1 cut(s)	292
MlyI	GAGTC	1 cut(s)	509
MnlI	CCTC	8 cut(s)	112, 130, 148, 166, 535, 653, 702, 757
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	5 cut(s)	53, 263, 297, 593, 777
MslI	CAYNNNNRTG	1 cut(s)	575
MspA1I	CMGCKG	2 cut(s)	213, 368
MspCI	CTTAAG	1 cut(s)	262
MspI	CCGG	2 cut(s)	194, 651
MunI	CAATTG	1 cut(s)	789
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	207, 374
NcoI	CCATGG	1 cut(s)	526
NdeII	GATC	1 cut(s)	388
NlaIII	CATG	2 cut(s)	530, 574
NsbI	TGCGCA	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	458
PkrI	GCNGC	5 cut(s)	29, 212, 286, 367, 547
PleI	GAGTC	1 cut(s)	509
PpsI	GAGTC	1 cut(s)	509
PshAI	GACNNNNGTC	1 cut(s)	428
Psp124BI	GAGCTC	1 cut(s)	397
Psp1406I	AACGTT	1 cut(s)	411
PspPI	GGNCC	1 cut(s)	611
PstI	CTGCAG	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	1 cut(s)	664
RsaNI	GTAC	1 cut(s)	663
RseI	CAYNNNNRTG	1 cut(s)	575
SacI	GAGCTC	1 cut(s)	397
SaqAI	TTAA	5 cut(s)	53, 263, 297, 593, 777
SatI	GCNGC	5 cut(s)	28, 211, 285, 366, 546
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	1 cut(s)	611
SchI	GAGTC	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	397
SfaNI	GCATC	1 cut(s)	658
SfcI	CTRYAG	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	575
SmlI	CTYRAG	2 cut(s)	262, 402
SmoI	CTYRAG	2 cut(s)	262, 402
Sse9I	AATT	6 cut(s)	63, 279, 446, 563, 774, 789
SsiI	CCGC	4 cut(s)	213, 285, 375, 846
SstI	GAGCTC	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	526
TaaI	ACNGT	1 cut(s)	81
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	4 cut(s)	16, 32, 225, 391
TasI	AATT	6 cut(s)	63, 279, 446, 563, 774, 789
TauI	GCSGC	1 cut(s)	287
Tru1I	TTAA	5 cut(s)	53, 263, 297, 593, 777
Tru9I	TTAA	5 cut(s)	53, 263, 297, 593, 777
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	4 cut(s)	27, 210, 365, 545
TspRI	CASTG	1 cut(s)	84
Vha464I	CTTAAG	1 cut(s)	262
XmnI	GAANNNNTTC	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.