Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003550

Physical Location & Seq

Genomic Coordinates Forward (+)

3228640 .. 3230610

Gene Structure 1971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGTTGCTGTGCTATTCTTGATCGGCCAAGGTCATGAATCTCCTGATGTGGTTGATGCATTACTGGATACGAGCAGAACCCCAAGAAAACCTCAATATACCATGGCCCCAGAGATCCCATTGGTTCTTCAGTCCTGTGAATTTGAGGGTCTCAAGTTCACTTGTTCTTCAGATGCTGGGCAAGCGTTGCGTGTACACTTGGCAAAAGAATGCCAAAATTATCATCTCCAAGCTGCAATCTTCCATGAGGCTCTTCGGAGCTGTTTGCCAATAGAAAAAGATCAGAGTTCCTTGGAAAATAGAACAATCAAGAAGAAATGTGCCCATGTCCCTCTAGTGTCGCGGCCAACTGAGCCATCGTATGACGAGAGACGTGCCAAATTAAACTCCAAGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990481

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

133

Amino Acids

14.76

Weight (kDa)

7.67

Isoelectric Point (pI)

65.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PseudoU_synth_1	PF01416	1 - 49	1.2e-09	tRNA pseudouridine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34150
fragaria_vesca	FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780
malus_domestica	MD05G1036800.v1.1 MD05G1036900.v1.1
prunus_persica	Prupe.8G045000_v2.0.a1 Prupe.8G045000_v2.0.a1
pyrus_communis	pycom05g02710 pycom05g02720
rosa_chinensis	RchiOBHm_Chr6g0273621
rosa_laevigata	RLG00000013608
rosa_multiflora	Rmu_sc0001419.1_g000001 Rmu_sc0015671.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195210
rosa_rugosa	Rorug06G0076200 Rorug06G0076300 Rorug06G0076400
rosa_samantha	Rh6AG190900 Rh6BG194400 Rh6CG194300 Rh6DG186200
rosa_wichuraiana	Rw6G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	343
AciI	CCGC	1 cut(s)	343
AclWI	GGATC	1 cut(s)	109
AcoI	YGGCCR	2 cut(s)	25, 344
AcsI	RAATTY	1 cut(s)	140
AcuI	CTGAAG	2 cut(s)	113, 153
AfaI	GTAC	1 cut(s)	195
AjiI	CACGTC	1 cut(s)	374
AluBI	AGCT	2 cut(s)	233, 261
AluI	AGCT	2 cut(s)	233, 261
Alw26I	GTCTC	2 cut(s)	155, 364
AlwI	GGATC	1 cut(s)	109
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	3 cut(s)	25, 105, 344
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	1 cut(s)	364
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BciVI	GTATCC	1 cut(s)	61
BcoDI	GTCTC	2 cut(s)	155, 364
BfaI	CTAG	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	61
BisI	GCNGC	2 cut(s)	234, 344
BlsI	GCNGC	2 cut(s)	235, 345
BmgBI	CACGTC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	108
BmsI	GCATC	2 cut(s)	46, 163
BpuEI	CTTGAG	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	4 cut(s)	28, 102, 291, 390
Bse1I	ACTGG	1 cut(s)	69
BseDI	CCNNGG	4 cut(s)	28, 102, 291, 390
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	220
BseYI	CCCAGC	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	343
BshFI	GGCC	3 cut(s)	27, 107, 346
BslFI	GGGAC	1 cut(s)	314
BsmAI	GTCTC	2 cut(s)	155, 364
BsmBI	CGTCTC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	314
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	3 cut(s)	27, 107, 346
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp1407I	TGTACA	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	21, 114, 280
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	3 cut(s)	27, 107, 346
BspCNI	CTCAG	1 cut(s)	343
BspFNI	CGCG	1 cut(s)	343
BspHI	TCATGA	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	109
BspQI	GCTCTTC	1 cut(s)	258
BspTNI	GGTCTC	1 cut(s)	155
BsrGI	TGTACA	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	4 cut(s)	28, 102, 291, 390
BssMI	GATC	3 cut(s)	21, 114, 280
BssT1I	CCWWGG	4 cut(s)	28, 102, 291, 390
Bst6I	CTCTTC	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	187
BstAUI	TGTACA	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	1 cut(s)	102
BstFNI	CGCG	1 cut(s)	343
BstKTI	GATC	3 cut(s)	24, 117, 283
BstMAI	GTCTC	2 cut(s)	155, 364
BstMBI	GATC	3 cut(s)	21, 114, 280
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 187, 352
BstSLI	GKGCMC	1 cut(s)	325
BstUI	CGCG	1 cut(s)	343
BstV1I	GCAGC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	61
BsuRI	GGCC	3 cut(s)	27, 107, 346
BtgI	CCRYGG	1 cut(s)	102
BtrI	CACGTC	1 cut(s)	374
Cac8I	GCNNGC	1 cut(s)	183
CaiI	CAGNNNCTG	1 cut(s)	176
CciI	TCATGA	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	4 cut(s)	35, 103, 245, 326
CviJI	RGCY	7 cut(s)	27, 107, 233, 251, 261, 346, 355
CviKI_1	RGCY	7 cut(s)	27, 107, 233, 251, 261, 346, 355
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	3 cut(s)	23, 116, 282
DpnII	GATC	3 cut(s)	21, 114, 280
EaeI	YGGCCR	2 cut(s)	25, 344
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	4 cut(s)	28, 102, 291, 390
Eco31I	GGTCTC	1 cut(s)	155
Eco57I	CTGAAG	2 cut(s)	113, 153
EcoT14I	CCWWGG	4 cut(s)	28, 102, 291, 390
EcoT22I	ATGCAT	1 cut(s)	61
ErhI	CCWWGG	4 cut(s)	28, 102, 291, 390
Esp3I	CGTCTC	1 cut(s)	364
FaeI	CATG	4 cut(s)	38, 106, 248, 329
FaiI	YATR	6 cut(s)	36, 99, 104, 246, 327, 363
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	4 cut(s)	34, 102, 244, 325
Fnu4HI	GCNGC	2 cut(s)	234, 344
Fsp4HI	GCNGC	2 cut(s)	234, 344
FspBI	CTAG	1 cut(s)	335
GluI	GCNGC	2 cut(s)	234, 344
GsaI	CCCAGC	1 cut(s)	180
HaeIII	GGCC	3 cut(s)	27, 107, 346
Hin1II	CATG	4 cut(s)	38, 106, 248, 329
HinfI	GANTC	1 cut(s)	38
Hpy166II	GTNNAC	3 cut(s)	159, 194, 196
Hpy188I	TCNGA	3 cut(s)	172, 258, 285
Hpy188III	TCNNGA	4 cut(s)	19, 35, 44, 310
Hpy8I	GTNNAC	3 cut(s)	159, 194, 196
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	2 cut(s)	59, 236
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 187, 352
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	4 cut(s)	38, 106, 248, 329
Kzo9I	GATC	3 cut(s)	21, 114, 280
LguI	GCTCTTC	1 cut(s)	258
LmnI	GCTCC	1 cut(s)	258
LpnPI	CCDG	5 cut(s)	50, 57, 123, 148, 162
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	2 cut(s)	46, 163
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	1 cut(s)	373
MalI	GATC	3 cut(s)	23, 116, 282
MboI	GATC	3 cut(s)	21, 114, 280
MboII	GAAGA	5 cut(s)	119, 159, 232, 245, 325
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	3 cut(s)	140, 217, 380
MnlI	CCTC	4 cut(s)	102, 139, 241, 342
Mph1103I	ATGCAT	1 cut(s)	61
MseI	TTAA	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	215
MvnI	CGCG	1 cut(s)	343
MwoI	GCNNNNNNNGC	3 cut(s)	182, 187, 352
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	3 cut(s)	21, 114, 280
NlaIII	CATG	4 cut(s)	38, 106, 248, 329
NlaIV	GGNNCC	1 cut(s)	108
NsiI	ATGCAT	1 cut(s)	61
PagI	TCATGA	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	258
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	235, 345
PspFI	CCCAGC	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	2 cut(s)	234, 344
Sau3AI	GATC	3 cut(s)	21, 114, 280
Sau96I	GGNCC	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	5 cut(s)	34, 94, 235, 263, 376
SfaNI	GCATC	2 cut(s)	46, 163
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	3 cut(s)	140, 217, 380
SsiI	CCGC	1 cut(s)	343
SspMI	CTAG	1 cut(s)	335
StyI	CCWWGG	4 cut(s)	28, 102, 291, 390
TaiI	ACGT	1 cut(s)	376
TasI	AATT	3 cut(s)	140, 217, 380
TatI	WGTACW	1 cut(s)	193
TauI	GCSGC	1 cut(s)	346
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	51
XapI	RAATTY	1 cut(s)	140
XspI	CTAG	1 cut(s)	335
Zsp2I	ATGCAT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.