pycom05g09990

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
13265340 .. 13270115
4776 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g09990.12

Sequence Viewer

Length: 1788 bp
ATGCATTTTCAAAGGACAGCTGGCTTGGAGCAGGAAATTGAAAACTTGAAAAAGAAGCTAGCTGCTTGCACCAGAGATAATGTGAATCTTCAAGAAGAGCTTTCGGAGGCTTACAGAATCAAAGGCCAGTTGGCTGATCTACATGGTGCAGAGGTTGCAAAGAATGTGGAAGCAGAAAAACAGCTTAAATTTTTCCAGGGCTGTGTGGCTGCAGCTTTTGCTGAACGAGATCATTCAATAATGGAGGCTGAGAAGGCTAAGGAAAAAGAGGAGCTCATGTCAAACAAATTTTGTGATATAGAGAAGAGGTTAGAAGAACAAACTGCAGATTGTTCTGAACAGAAGAAACTTAATGATAAACTGAAAAGTGATTTAGCAATGCAAGAAGAGAAGATTGAAGCTTTCAAGAAGGTAATCGATAAATTTTATGAGATCAGGCAGCAAAGCCCTGAGGGATGTGAGAGTACAAGTTGGGACAGAAAATGTGCATGCCTTTTGCATGATCCTGCAGAATGGTGGAGTTTCAATGATGCTTCAACATCTAAATATATTAGTGCATTAGAGGAAGAGCTCGAGAGGACAAGGAAATCTGTAGATAATCTTCAAAACAGGCTACGGATGGGCTTGGAAATCGAAAATCATTTAAAGAGGAAAGTTGGTGAATTGGAAAAGAAAAAAATCCTTACAAATAAAATGATAAAACATGAGATTGCAGAATTGCATCATTACCATTCTCAGCATAGAGTTCTCATCATGAATTTACTCAACGAGGGAAAGGCTAGTATCAAATCAGTAATTGATGCTATAGAGGAAAATTGTAGGCAAATTGATGCAACCAGACTCCAAAGGCATAAATCTAGTAATGCTGACCCCCAATTGGTATCCAAGAATAGTGGTCCTGACTCGTCAGAGTTTGTGGCAGTTAGAGGAAACGATTACTCTGAAGCCCTTGCACATGCATTGCAGGACAAGGTGTCAACATTATTGCTTCTTTCACAGCAGGAAGAAAGACATTTACTTGACAGAAATGTGAATGCAGCTCTTGAAAGAAAAATAGAAGAGCTTCACAGAAACTTACTGCAGGTTACCAATGAAAAAGTAAAAGCTCTAATGGAGTTTGCACAATTGAAGCAGGATTATCATCAGCTTAAAGAGAGAATTGGTCAAGGGAGAAATAGAGAAAATTTGCCTGCAGAAATTGGGGATAGGAAAGTAGTTACTCATGAAAGGGATGGAAGGCTAAAAAGTTTGTTGAAGAAAACATACTTGAGTCGTTGGGTTGCTAATGTAGACTTTAGGGGACGTGAAGCTGCAAGTGGCCTAAATGTTGAGGGGAATCTATCTGGCAAGAGGTTCGATAGCATGGAGTTTGCCAGAATGAAAATTGAAATAGCAACACTTCAAGAAAGCATGGGAAGTATGGAGCATCTGACTACTACAGTTCACAGGCTTCGTCTATCCCTTTCAAAGGTCAAAGAGTTGGTGACTTCTGGAAGTACCACATTTGCTAGCCTATCAGAAACTGTCAACGACATTATTAATGAGGCAAAACTAGTGAAGACTGCACTTAGCAGCTCCCTACCGATTAGTTGGTCAGCAGATGAAGACGTTGAATTCAATGGTCAGAGTGTCCGCAATGAGCCTGGTCATGCTTACGGGGAGCCCAGCCATGAGAAGATAGATTCTGTTTATGCTGCTGGACTTGAGATGGTGGAGCTCCTAATACTTGCAGCGCAAATATTGAAAGACAACATGAACAAAAATGTCTCTCAACCGAAACAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

596

Amino Acids

67.8

Weight (kDa)

6.25

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1072
AccI GTMKAC 1 cut(s) 1290
AciI CCGC 1 cut(s) 1633
AclWI GGATC 1 cut(s) 497
AcsI RAATTY 6 cut(s) 188, 287, 422, 757, 1183, 1613
AcuI CTGAAG 1 cut(s) 963
AfaI GTAC 2 cut(s) 466, 1498
AfiI CCNNNNNNNGG 2 cut(s) 877, 1468
AhdI GACNNNNNGTC 1 cut(s) 973
AhlI ACTAGT 1 cut(s) 1552
AjiI CACGTC 1 cut(s) 1304
AjnI CCWGG 2 cut(s) 195, 1642
Alw21I GWGCWC 3 cut(s) 276, 573, 1719
Alw26I GTCTC 1 cut(s) 1771
AlwI GGATC 1 cut(s) 497
AlwNI CAGNNNCTG 1 cut(s) 1523
Ama87I CYCGRG 1 cut(s) 572
AoxI GGCC 2 cut(s) 124, 1318
ApeKI GCWGC 9 cut(s) 62, 209, 212, 439, 1037, 1310, 1572, 1694, 1730
ApoI RAATTY 6 cut(s) 188, 287, 422, 757, 1183, 1613
AseI ATTAAT 1 cut(s) 1539
Asp700I GAANNNNTTC 1 cut(s) 1062
AspLEI GCGC 1 cut(s) 1735
AspS9I GGNCC 1 cut(s) 896
AsuHPI GGTGA 2 cut(s) 671, 1495
AsuNHI GCTAGC 2 cut(s) 58, 1508
AvaI CYCGRG 1 cut(s) 572
AvaII GGWCC 1 cut(s) 896
AxyI CCTNAGG 1 cut(s) 450
BanII GRGCYC 4 cut(s) 276, 573, 1665, 1719
BarI GAAGNNNNNNTAC 4 cut(s) 585, 617, 1247, 1279
BbsI GAAGAC 2 cut(s) 1565, 1611
Bbv12I GWGCWC 3 cut(s) 276, 573, 1719
BbvI GCAGC 9 cut(s) 49, 196, 224, 451, 1049, 1297, 1584, 1681, 1742
BccI CCATC 3 cut(s) 613, 1226, 1702
BcgI CGANNNNNNTGC 2 cut(s) 1336, 1370
BciT130I CCWGG 2 cut(s) 197, 1644
BciVI GTATCC 1 cut(s) 892
BcoDI GTCTC 1 cut(s) 1771
BcuI ACTAGT 1 cut(s) 1552
BfaI CTAG 5 cut(s) 59, 780, 858, 1509, 1553
BfmI CTRYAG 8 cut(s) 210, 324, 507, 591, 804, 1079, 1191, 1437
BfuAI ACCTGC 1 cut(s) 1072
BfuI GTATCC 1 cut(s) 892
BisI GCNGC 9 cut(s) 63, 210, 213, 440, 1038, 1311, 1573, 1695, 1731
BlsI GCNGC 9 cut(s) 64, 211, 214, 441, 1039, 1312, 1574, 1696, 1732
Bme1390I CCNGG 2 cut(s) 197, 1644
Bme18I GGWCC 1 cut(s) 896
BmeRI GACNNNNNGTC 1 cut(s) 973
BmeT110I CYCGRG 1 cut(s) 572
BmgBI CACGTC 1 cut(s) 1304
BmgT120I GGNCC 1 cut(s) 896
BmiI GGNNCC 1 cut(s) 1662
BmrFI CCNGG 2 cut(s) 197, 1644
BmsI GCATC 5 cut(s) 520, 730, 790, 820, 1435
BmtI GCTAGC 2 cut(s) 62, 1512
BpiI GAAGAC 2 cut(s) 1565, 1611
Bpu10I CCTNAGC 1 cut(s) 258
BpuEI CTTGAG 2 cut(s) 1288, 1724
Bsa29I ATCGAT 1 cut(s) 417
BsaBI GATNNNNATC 1 cut(s) 1140
BsaJI CCNNGG 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 2 cut(s) 877, 1468
Bse1I ACTGG 1 cut(s) 127
Bse21I CCTNAGG 1 cut(s) 450
Bse3DI GCAATG 3 cut(s) 384, 959, 1642
Bse8I GATNNNNATC 1 cut(s) 1140
BseBI CCWGG 2 cut(s) 197, 1644
BseCI ATCGAT 1 cut(s) 417
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 3 cut(s) 461, 624, 1237
BseJI GATNNNNATC 1 cut(s) 1140
BseLI CCNNNNNNNGG 2 cut(s) 877, 1468
BseMI GCAATG 3 cut(s) 384, 959, 1642
BseMII CTCAG 3 cut(s) 240, 441, 749
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 9 cut(s) 49, 196, 224, 451, 1049, 1297, 1584, 1681, 1742
BseYI CCCAGC 1 cut(s) 1664
BsgI GTGCAG 2 cut(s) 168, 1548
BshFI GGCC 2 cut(s) 126, 1320
BshVI ATCGAT 1 cut(s) 417
BsiHKAI GWGCWC 3 cut(s) 276, 573, 1719
BsiHKCI CYCGRG 1 cut(s) 572
BslFI GGGAC 2 cut(s) 488, 1314
BslI CCNNNNNNNGG 2 cut(s) 877, 1468
BsmAI GTCTC 1 cut(s) 1771
BsmFI GGGAC 2 cut(s) 488, 1314
BsmI GAATGC 1 cut(s) 1039
BsnI GGCC 2 cut(s) 126, 1320
BsoBI CYCGRG 1 cut(s) 572
Bsp1286I GDGCHC 4 cut(s) 276, 573, 1665, 1719
Bsp143I GATC 4 cut(s) 136, 229, 432, 502
BspACI CCGC 1 cut(s) 1633
BspANI GGCC 2 cut(s) 126, 1320
BspCNI CTCAG 3 cut(s) 241, 442, 748
BspDI ATCGAT 1 cut(s) 417
BspHI TCATGA 2 cut(s) 753, 1222
BspLI GGNNCC 1 cut(s) 1662
BspMAI CTGCAG 5 cut(s) 214, 328, 511, 1083, 1195
BspMI ACCTGC 1 cut(s) 1072
BspOI GCTAGC 2 cut(s) 62, 1512
BspPI GGATC 1 cut(s) 497
BspQI GCTCTTC 3 cut(s) 90, 561, 1053
BsrDI GCAATG 3 cut(s) 384, 959, 1642
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 4 cut(s) 136, 229, 432, 502
Bst2UI CCWGG 2 cut(s) 197, 1644
Bst4CI ACNGT 2 cut(s) 1441, 1525
Bst6I CTCTTC 5 cut(s) 90, 299, 381, 561, 1053
BstAPI GCANNNNNTGC 2 cut(s) 155, 218
BstC8I GCNNGC 6 cut(s) 22, 60, 67, 490, 1191, 1510
BstDEI CTNAG 5 cut(s) 249, 258, 450, 735, 1568
BstEII GGTNACC 1 cut(s) 1084
BstENI CCTNNNNNAGG 1 cut(s) 1466
BstF5I GGATG 3 cut(s) 461, 624, 1237
BstHHI GCGC 1 cut(s) 1735
BstKTI GATC 4 cut(s) 139, 232, 435, 505
BstMAI GTCTC 1 cut(s) 1771
BstMBI GATC 4 cut(s) 136, 229, 432, 502
BstMWI GCNNNNNNNGC 3 cut(s) 155, 218, 254
BstNI CCWGG 2 cut(s) 197, 1644
BstNSI RCATGY 2 cut(s) 492, 959
BstPI GGTNACC 1 cut(s) 1084
BstSCI CCNGG 2 cut(s) 195, 1642
BstSFI CTRYAG 8 cut(s) 210, 324, 507, 591, 804, 1079, 1191, 1437
BstV1I GCAGC 9 cut(s) 49, 196, 224, 451, 1049, 1297, 1584, 1681, 1742
BstV2I GAAGAC 2 cut(s) 1565, 1611
Bsu15I ATCGAT 1 cut(s) 417
Bsu36I CCTNAGG 1 cut(s) 450
BsuI GTATCC 1 cut(s) 892
BsuRI GGCC 2 cut(s) 126, 1320
BsuTUI ATCGAT 1 cut(s) 417
BtrI CACGTC 1 cut(s) 1304
BtsCI GGATG 3 cut(s) 461, 624, 1237
BveI ACCTGC 1 cut(s) 1072
Cac8I GCNNGC 6 cut(s) 22, 60, 67, 490, 1191, 1510
CaiI CAGNNNCTG 1 cut(s) 1523
CciI TCATGA 2 cut(s) 753, 1222
CfoI GCGC 1 cut(s) 1735
Cfr13I GGNCC 1 cut(s) 896
ClaI ATCGAT 1 cut(s) 417
Csp6I GTAC 2 cut(s) 465, 1497
CspCI CAANNNNNGTGG 4 cut(s) 147, 182, 874, 909
CviQI GTAC 2 cut(s) 465, 1497
DdeI CTNAG 5 cut(s) 249, 258, 450, 735, 1568
DpnI GATC 4 cut(s) 138, 231, 434, 504
DpnII GATC 4 cut(s) 136, 229, 432, 502
DraI TTTAAA 1 cut(s) 645
DriI GACNNNNNGTC 1 cut(s) 973
Eam1104I CTCTTC 5 cut(s) 90, 299, 381, 561, 1053
Eam1105I GACNNNNNGTC 1 cut(s) 973
EarI CTCTTC 5 cut(s) 90, 299, 381, 561, 1053
Ecl136II GAGCTC 3 cut(s) 274, 571, 1717
Eco24I GRGCYC 4 cut(s) 276, 573, 1665, 1719
Eco47I GGWCC 1 cut(s) 896
Eco53kI GAGCTC 3 cut(s) 274, 571, 1717
Eco57I CTGAAG 1 cut(s) 963
Eco81I CCTNAGG 1 cut(s) 450
Eco88I CYCGRG 1 cut(s) 572
Eco91I GGTNACC 1 cut(s) 1084
EcoICRI GAGCTC 3 cut(s) 274, 571, 1717
EcoNI CCTNNNNNAGG 1 cut(s) 1466
EcoO65I GGTNACC 1 cut(s) 1084
EcoRI GAATTC 1 cut(s) 1613
EcoRII CCWGG 2 cut(s) 195, 1642
EcoT22I ATGCAT 2 cut(s) 6, 961
EcoT38I GRGCYC 4 cut(s) 276, 573, 1665, 1719
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FaqI GGGAC 2 cut(s) 488, 1314
FblI GTMKAC 1 cut(s) 1290
Fnu4HI GCNGC 9 cut(s) 63, 210, 213, 440, 1038, 1311, 1573, 1695, 1731
FokI GGATG 3 cut(s) 468, 631, 1244
FriOI GRGCYC 4 cut(s) 276, 573, 1665, 1719
Fsp4HI GCNGC 9 cut(s) 63, 210, 213, 440, 1038, 1311, 1573, 1695, 1731
FspBI CTAG 5 cut(s) 59, 780, 858, 1509, 1553
GlaI GCGC 1 cut(s) 1734
GluI GCNGC 9 cut(s) 63, 210, 213, 440, 1038, 1311, 1573, 1695, 1731
GsaI CCCAGC 1 cut(s) 1668
HaeIII GGCC 2 cut(s) 126, 1320
HhaI GCGC 1 cut(s) 1735
Hin6I GCGC 1 cut(s) 1733
HinP1I GCGC 1 cut(s) 1733
HincII GTYRAC 2 cut(s) 978, 1528
HindII GTYRAC 2 cut(s) 978, 1528
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 7 cut(s) 85, 117, 840, 902, 1270, 1336, 1682
HphI GGTGA 2 cut(s) 671, 1495
Hpy166II GTNNAC 4 cut(s) 978, 1291, 1444, 1528
Hpy188I TCNGA 7 cut(s) 106, 337, 910, 943, 1431, 1519, 1626
Hpy188III TCNNGA 9 cut(s) 92, 406, 574, 754, 899, 1043, 1223, 1403, 1491
Hpy8I GTNNAC 4 cut(s) 978, 1291, 1444, 1528
HpyAV CCTTC 3 cut(s) 247, 403, 1230
HpyCH4III ACNGT 2 cut(s) 1441, 1525
HpyCH4IV ACGT 2 cut(s) 1303, 1608
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 218, 254
HpyF3I CTNAG 5 cut(s) 249, 258, 450, 735, 1568
HpySE526I ACGT 2 cut(s) 1303, 1608
HspAI GCGC 1 cut(s) 1733
Kzo9I GATC 4 cut(s) 136, 229, 432, 502
LguI GCTCTTC 3 cut(s) 90, 561, 1053
LmnI GCTCC 7 cut(s) 28, 271, 1423, 1580, 1660, 1714, 1722
Lsp1109I GCAGC 9 cut(s) 49, 196, 224, 451, 1049, 1297, 1584, 1681, 1742
LweI GCATC 5 cut(s) 520, 730, 790, 820, 1435
MaeI CTAG 5 cut(s) 59, 780, 858, 1509, 1553
MaeII ACGT 2 cut(s) 1303, 1608
MaeIII GTNAC 3 cut(s) 1084, 1216, 1483
MalI GATC 4 cut(s) 138, 231, 434, 504
MboI GATC 4 cut(s) 136, 229, 432, 502
MfeI CAATTG 2 cut(s) 875, 1124
MhlI GDGCHC 4 cut(s) 276, 573, 1665, 1719
MlyI GAGTC 3 cut(s) 834, 896, 1279
Mph1103I ATGCAT 2 cut(s) 6, 961
MroXI GAANNNNTTC 1 cut(s) 1062
MseI TTAA 5 cut(s) 186, 351, 644, 1149, 1539
MspA1I CMGCKG 1 cut(s) 20
MspR9I CCNGG 2 cut(s) 197, 1644
MunI CAATTG 2 cut(s) 875, 1124
Mva1269I GAATGC 1 cut(s) 1039
MvaI CCWGG 2 cut(s) 197, 1644
MwoI GCNNNNNNNGC 3 cut(s) 155, 218, 254
NdeII GATC 4 cut(s) 136, 229, 432, 502
NheI GCTAGC 2 cut(s) 58, 1508
NlaIV GGNNCC 1 cut(s) 1662
NmuCI GTSAC 1 cut(s) 1483
NsiI ATGCAT 2 cut(s) 6, 961
NspI RCATGY 2 cut(s) 492, 959
PaeI GCATGC 1 cut(s) 492
PaeR7I CTCGAG 1 cut(s) 572
PagI TCATGA 2 cut(s) 753, 1222
PciSI GCTCTTC 3 cut(s) 90, 561, 1053
PctI GAATGC 1 cut(s) 1039
PdmI GAANNNNTTC 1 cut(s) 1062
PfeI GAWTC 4 cut(s) 85, 117, 1336, 1682
PkrI GCNGC 9 cut(s) 64, 211, 214, 441, 1039, 1312, 1574, 1696, 1732
PleI GAGTC 3 cut(s) 834, 896, 1278
PpsI GAGTC 3 cut(s) 834, 896, 1278
PshBI ATTAAT 1 cut(s) 1539
Psp124BI GAGCTC 3 cut(s) 276, 573, 1719
Psp6I CCWGG 2 cut(s) 195, 1642
PspEI GGTNACC 1 cut(s) 1084
PspFI CCCAGC 1 cut(s) 1664
PspGI CCWGG 2 cut(s) 195, 1642
PspN4I GGNNCC 1 cut(s) 1662
PspPI GGNCC 1 cut(s) 896
PstI CTGCAG 5 cut(s) 214, 328, 511, 1083, 1195
PstNI CAGNNNCTG 1 cut(s) 1523
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 2 cut(s) 466, 1498
RsaNI GTAC 2 cut(s) 465, 1497
SacI GAGCTC 3 cut(s) 276, 573, 1719
SapI GCTCTTC 3 cut(s) 90, 561, 1053
SaqAI TTAA 5 cut(s) 186, 351, 644, 1149, 1539
SatI GCNGC 9 cut(s) 63, 210, 213, 440, 1038, 1311, 1573, 1695, 1731
Sau3AI GATC 4 cut(s) 136, 229, 432, 502
Sau96I GGNCC 1 cut(s) 896
SchI GAGTC 3 cut(s) 834, 896, 1279
ScrFI CCNGG 2 cut(s) 197, 1644
SduI GDGCHC 4 cut(s) 276, 573, 1665, 1719
SfaNI GCATC 5 cut(s) 520, 730, 790, 820, 1435
SfcI CTRYAG 8 cut(s) 210, 324, 507, 591, 804, 1079, 1191, 1437
Sfr274I CTCGAG 1 cut(s) 572
SinI GGWCC 1 cut(s) 896
SlaI CTCGAG 1 cut(s) 572
SmlI CTYRAG 3 cut(s) 572, 1267, 1703
SmoI CTYRAG 3 cut(s) 572, 1267, 1703
SpeI ACTAGT 1 cut(s) 1552
SphI GCATGC 1 cut(s) 492
SsiI CCGC 1 cut(s) 1633
SspI AATATT 1 cut(s) 1740
SspMI CTAG 5 cut(s) 59, 780, 858, 1509, 1553
SstI GAGCTC 3 cut(s) 276, 573, 1719
StyD4I CCNGG 2 cut(s) 195, 1642
TaaI ACNGT 2 cut(s) 1441, 1525
TaiI ACGT 2 cut(s) 1306, 1611
TaqI TCGA 4 cut(s) 417, 573, 633, 1356
TatI WGTACW 1 cut(s) 464
TfiI GAWTC 4 cut(s) 85, 117, 1336, 1682
Tru1I TTAA 5 cut(s) 186, 351, 644, 1149, 1539
Tru9I TTAA 5 cut(s) 186, 351, 644, 1149, 1539
TseFI GTSAC 1 cut(s) 1483
TseI GCWGC 9 cut(s) 62, 209, 212, 439, 1037, 1310, 1572, 1694, 1730
Tsp45I GTSAC 1 cut(s) 1483
TspDTI ATGAA 6 cut(s) 770, 1107, 1239, 1394, 1617, 1769
TspGWI ACGGA 1 cut(s) 631
VpaK11BI GGWCC 1 cut(s) 896
VspI ATTAAT 1 cut(s) 1539
XagI CCTNNNNNAGG 1 cut(s) 1466
XapI RAATTY 6 cut(s) 188, 287, 422, 757, 1183, 1613
XceI RCATGY 2 cut(s) 492, 959
XhoI CTCGAG 1 cut(s) 572
XmiI GTMKAC 1 cut(s) 1290
XmnI GAANNNNTTC 1 cut(s) 1062
XspI CTAG 5 cut(s) 59, 780, 858, 1509, 1553
Zsp2I ATGCAT 2 cut(s) 6, 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.