Rorug05G0538400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002360
Physical Location & Seq
Reverse (-)
72720387 .. 72721051
665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0538400.1

Sequence Viewer

Length: 459 bp
ATGTTGAATGTGAAGATGATGCTCAGCCGCAGCTCAAGATGTATGCTTTCTTCTCTTGCTGTTCGCCTCAACAATTTCATGCCTTTGTTTCATTCGAGAGAAGCCCATGTAGAGAGAAAACCAGCCTCAAACCCTCAAGTTGACGATGTCTCCATATTGTTCCATGAAATGCTTCACGTCCTCTGCCTTCTGTTGTCTCTTCTATTGGGTCAACTTGTCAAATTGAAACACTATTCTGCAGCCATCCCTCTGTTTAAACAAATGCTTCTCTCTGGAATTGCTCCTAATCACTATACTTTTAACATTATCTTTTTTCACCAAAATGCTGCAGAAATGATTAGTAGAGGTATTACTCCAGATGTTGTTCCTTACACCTCTTTGATTCAAGGACTTTGCAATATAGGCCACTGGAAACAAGCTACAAGGTTGCTTGATGAAATGTTGAGTCAAGGTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.23

Weight (kDa)

9.18

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 68 - 104 4.2e-07 PPR repeat family
PPR_1 PF12854 115 - 147 1.4e-10 PPR repeat
PPR_2 PF13041 119 - 152 6.2e-08 PPR repeat family
PPR PF01535 123 - 152 4.5e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 28
AgsI TTSAA 3 cut(s) 7, 226, 386
AjiI CACGTC 1 cut(s) 178
AluBI AGCT 2 cut(s) 33, 419
AluI AGCT 2 cut(s) 33, 419
Alw26I GTCTC 2 cut(s) 154, 201
AoxI GGCC 1 cut(s) 403
ApeKI GCWGC 3 cut(s) 30, 239, 326
Asp700I GAANNNNTTC 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 308
BarI GAAGNNNNNNTAC 2 cut(s) 34, 66
BbvI GCAGC 3 cut(s) 42, 251, 313
BccI CCATC 1 cut(s) 251
BcoDI GTCTC 2 cut(s) 154, 201
BfmI CTRYAG 2 cut(s) 237, 327
BisI GCNGC 4 cut(s) 28, 31, 240, 327
BlpI GCTNAGC 1 cut(s) 23
BlsI GCNGC 4 cut(s) 29, 32, 241, 328
BmgBI CACGTC 1 cut(s) 178
BmsI GCATC 1 cut(s) 9
BpmI CTGGAG 1 cut(s) 339
Bpu1102I GCTNAGC 1 cut(s) 23
BpuEI CTTGAG 2 cut(s) 19, 120
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bse1I ACTGG 1 cut(s) 413
BseGI GGATG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 37
BseNI ACTGG 1 cut(s) 413
BseXI GCAGC 3 cut(s) 42, 251, 313
BshFI GGCC 1 cut(s) 405
BsmAI GTCTC 2 cut(s) 154, 201
BsnI GGCC 1 cut(s) 405
Bsp1720I GCTNAGC 1 cut(s) 23
BspACI CCGC 1 cut(s) 28
BspANI GGCC 1 cut(s) 405
BspCNI CTCAG 1 cut(s) 36
BspMAI CTGCAG 2 cut(s) 241, 331
BsrI ACTGG 1 cut(s) 413
Bst6I CTCTTC 1 cut(s) 204
BstDEI CTNAG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 243
BstMAI GTCTC 2 cut(s) 154, 201
BstMWI GCNNNNNNNGC 1 cut(s) 402
BstSFI CTRYAG 2 cut(s) 237, 327
BstV1I GCAGC 3 cut(s) 42, 251, 313
BsuRI GGCC 1 cut(s) 405
BtrI CACGTC 1 cut(s) 178
BtsCI GGATG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 406
CviAII CATG 3 cut(s) 79, 107, 164
CviJI RGCY 7 cut(s) 27, 33, 104, 125, 242, 405, 419
CviKI_1 RGCY 7 cut(s) 27, 33, 104, 125, 242, 405, 419
DdeI CTNAG 1 cut(s) 23
DraI TTTAAA 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
FaeI CATG 3 cut(s) 82, 110, 167
FaiI YATR 7 cut(s) 44, 80, 108, 155, 165, 294, 401
FatI CATG 3 cut(s) 78, 106, 163
Fnu4HI GCNGC 4 cut(s) 28, 31, 240, 327
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 4 cut(s) 28, 31, 240, 327
GluI GCNGC 4 cut(s) 28, 31, 240, 327
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 1 cut(s) 405
Hin1II CATG 3 cut(s) 82, 110, 167
HincII GTYRAC 2 cut(s) 142, 212
HindII GTYRAC 2 cut(s) 142, 212
HinfI GANTC 2 cut(s) 382, 445
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 2 cut(s) 142, 212
Hpy188III TCNNGA 4 cut(s) 36, 96, 273, 356
Hpy8I GTNNAC 2 cut(s) 142, 212
HpyAV CCTTC 1 cut(s) 197
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 3 cut(s) 239, 329, 396
HpyF10VI GCNNNNNNNGC 1 cut(s) 402
HpyF3I CTNAG 1 cut(s) 23
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 3 cut(s) 82, 110, 167
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 4 cut(s) 135, 258, 369, 394
Lsp1109I GCAGC 3 cut(s) 42, 251, 313
LweI GCATC 1 cut(s) 9
MaeII ACGT 1 cut(s) 177
MboII GAAGA 3 cut(s) 25, 42, 191
MluCI AATT 3 cut(s) 73, 221, 276
MlyI GAGTC 1 cut(s) 454
MnlI CCTC 7 cut(s) 77, 136, 144, 191, 258, 338, 385
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 2 cut(s) 255, 300
MslI CAYNNNNRTG 1 cut(s) 321
MssI GTTTAAAC 1 cut(s) 256
MwoI GCNNNNNNNGC 1 cut(s) 402
NlaIII CATG 3 cut(s) 82, 110, 167
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 382
PflFI GACNNNGTC 1 cut(s) 146
PkrI GCNGC 4 cut(s) 29, 32, 241, 328
PleI GAGTC 1 cut(s) 453
PmeI GTTTAAAC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 453
PstI CTGCAG 2 cut(s) 241, 331
PsyI GACNNNGTC 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 2 cut(s) 255, 300
SatI GCNGC 4 cut(s) 28, 31, 240, 327
SchI GAGTC 1 cut(s) 454
SetI ASST 7 cut(s) 35, 180, 349, 377, 421, 428, 454
SfaNI GCATC 1 cut(s) 9
SfcI CTRYAG 2 cut(s) 237, 327
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 2 cut(s) 34, 135
SmoI CTYRAG 2 cut(s) 34, 135
Sse9I AATT 3 cut(s) 73, 221, 276
SsiI CCGC 1 cut(s) 28
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 95
TasI AATT 3 cut(s) 73, 221, 276
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 2 cut(s) 255, 300
Tru9I TTAA 2 cut(s) 255, 300
TscAI CASTG 1 cut(s) 413
TseI GCWGC 3 cut(s) 30, 239, 326
TspDTI ATGAA 4 cut(s) 67, 80, 180, 450
TspRI CASTG 1 cut(s) 413
Tth111I GACNNNGTC 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.