Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002360

Physical Location & Seq

Genomic Coordinates Reverse (-)

61224590 .. 61238161

Gene Structure 13572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015072

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTGGAATTTCTTTACTCAGAATTTGGAAGCTGAGAAGCAGCTTAAATTTTTCCAGGGCTGTGTAGCTGCAGCTTTTGCCGAACGGGATCAGTCCATAATAGAGGCTGAGACGGCTAGAGAGAAAGAGGAGCTCATGTCAAAGAAATTAAGTGAGACAGAGAAGAGGTTAGAAGAGCATACTGCAGATTGTTTTGAACAGAAGAAACTTAATGATAAATTGGAAACTGATTTAGCAATGCAAGAGGAGCAGAATGCAACTTTTAAGAAGGTCATCGATAAGTTTTATGAGATCAGGAAGGATTCTTTGGAGGGATTTGGGGATACAAGTTGGGACACCAAATGTGCATGCCTTTTGGATGATCCTGCAGAATGTTGGAGTTTCAATGACACTTCTACATCTAAATATATTAGTTCATTAGAAGAAGAGCTCGAGAGGGTGAGGATCTCTGCTGGTAATCTTCAAAACAGGCTACGAGGTTTGGAAATTGAAAATCATTTAAAGAGGAGAGTTTCGGAATTGGAAAAGAAGAAAATCCGTTCAGATGGAATGATAAAAAAGGAGATGGCAGAGTTACGTCATCACCATTCTCAGCATAAAGTTCACATCATGAGTTTACTTAATGAGGGAAGCAGTTGTACTAAATCAATACTTGATGCAGTGGAGAAAAAGTGTAGGCAAATTGATGCAAGCAGACTACAAAAGTTGGAGCCACCTATGGGAGATGTAAAGCAAGGCGAATCTGAATGTCAAGATGTACATGAAATTACAGATGCTGATCCCCAAGTGGTATTTAAGGATGGTGACTCTAGCTTATCAGACATGGTGGCAGTTGGGGAGGGTGATTCCTCTAGAGCCCGTGCACAGGCACTGCAAGACAAGGTGTTCTGCAAAGAATATTTTGGTTGCACTTTTTCTAATGTTGCAACGTTATTGCTTTTATCACAGCAGGAAGAAGGACATTTACCGGACAGAAATATAAGTCGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

331

Amino Acids

37.71

Weight (kDa)

5.21

Isoelectric Point (pI)

57.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14680 AT2G14680 AT2G14680 AT2G14680 AT2G14680 AT2G14680 AT2G14680 AT2G14680
fragaria_vesca	FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770
malus_domestica	MD05G1101600.v1.1 MD10G1106700.v1.1
prunus_persica	Prupe.8G146100_v2.0.a1 Prupe.8G146100_v2.0.a1
pyrus_communis	pycom05g09990 pycom10g09190
rosa_chinensis	RchiOBHm_Chr6g0252731
rosa_laevigata	RLG00000015066 RLG00000015072
rosa_multiflora	Rmu_sc0000829.1_g000045 Rmu_sc0010886.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212440
rosa_rugosa	Rorug05G0538400
rosa_samantha	Rh6AG054600 Rh6BG048500 Rh6CG047500 Rh6DG043000
rosa_wichuraiana	Rw6G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	929
AclWI	GGATC	4 cut(s)	96, 356, 452, 773
AcsI	RAATTY	3 cut(s)	7, 22, 47
AfaI	GTAC	2 cut(s)	640, 759
AfiI	CCNNNNNNNGG	2 cut(s)	719, 865
AgsI	TTSAA	4 cut(s)	197, 385, 464, 491
AjnI	CCWGG	1 cut(s)	54
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	8 cut(s)	32, 43, 68, 74, 133, 430, 813, 989
AluI	AGCT	8 cut(s)	32, 43, 68, 74, 133, 430, 813, 989
Alw21I	GWGCWC	3 cut(s)	135, 432, 865
Alw26I	GTCTC	2 cut(s)	104, 149
Alw44I	GTGCAC	1 cut(s)	861
AlwI	GGATC	4 cut(s)	96, 356, 452, 773
AlwNI	CAGNNNCTG	2 cut(s)	776, 871
Ama87I	CYCGRG	1 cut(s)	431
ApaLI	GTGCAC	1 cut(s)	861
ApeKI	GCWGC	3 cut(s)	40, 68, 71
ApoI	RAATTY	3 cut(s)	7, 22, 47
AsuHPI	GGTGA	4 cut(s)	451, 575, 815, 854
AvaI	CYCGRG	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	865
BanII	GRGCYC	3 cut(s)	135, 432, 859
BarI	GAAGNNNNNNTAC	4 cut(s)	622, 654, 948, 980
Bbv12I	GWGCWC	3 cut(s)	135, 432, 865
BbvI	GCAGC	3 cut(s)	52, 55, 83
BccI	CCATC	3 cut(s)	539, 559, 794
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	1 cut(s)	56
BciVI	GTATCC	1 cut(s)	316
BcoDI	GTCTC	2 cut(s)	104, 149
BfaI	CTAG	3 cut(s)	117, 810, 852
BfmI	CTRYAG	3 cut(s)	69, 183, 366
BfuI	GTATCC	1 cut(s)	316
BisI	GCNGC	3 cut(s)	41, 69, 72
BlsI	GCNGC	3 cut(s)	42, 70, 73
Bme1390I	CCNGG	1 cut(s)	56
BmeT110I	CYCGRG	1 cut(s)	431
BmiI	GGNNCC	1 cut(s)	711
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	3 cut(s)	646, 676, 763
Bsa29I	ATCGAT	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	777
BsaJI	CCNNGG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	967
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 656, 686
Bsc4I	CCNNNNNNNGG	2 cut(s)	719, 865
Bse3DI	GCAATG	1 cut(s)	243
Bse8I	GATNNNNATC	1 cut(s)	777
BseBI	CCWGG	1 cut(s)	56
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	2 cut(s)	364, 805
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	2 cut(s)	719, 865
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	4 cut(s)	24, 32, 99, 605
BseRI	GAGGAG	3 cut(s)	143, 260, 520
BseSI	GKGCMC	1 cut(s)	865
BseXI	GCAGC	3 cut(s)	52, 55, 83
BshVI	ATCGAT	1 cut(s)	276
BsiHKAI	GWGCWC	3 cut(s)	135, 432, 865
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	968
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	719, 865
BsmAI	GTCTC	2 cut(s)	104, 149
BsmBI	CGTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	259
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	4 cut(s)	135, 432, 859, 865
Bsp1407I	TGTACA	1 cut(s)	757
Bsp143I	GATC	5 cut(s)	88, 291, 361, 444, 778
BspCNI	CTCAG	4 cut(s)	25, 31, 100, 604
BspDI	ATCGAT	1 cut(s)	276
BspHI	TCATGA	1 cut(s)	609
BspLI	GGNNCC	1 cut(s)	711
BspMAI	CTGCAG	3 cut(s)	73, 187, 370
BspPI	GGATC	4 cut(s)	96, 356, 452, 773
BspQI	GCTCTTC	2 cut(s)	168, 420
BsrDI	GCAATG	1 cut(s)	243
BsrGI	TGTACA	1 cut(s)	757
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	5 cut(s)	88, 291, 361, 444, 778
Bst2UI	CCWGG	1 cut(s)	56
Bst6I	CTCTTC	3 cut(s)	158, 168, 420
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstAUI	TGTACA	1 cut(s)	757
BstC8I	GCNNGC	2 cut(s)	349, 691
BstDEI	CTNAG	4 cut(s)	18, 33, 108, 591
BstF5I	GGATG	2 cut(s)	364, 805
BstKTI	GATC	5 cut(s)	91, 294, 364, 447, 781
BstMAI	GTCTC	2 cut(s)	104, 149
BstMBI	GATC	5 cut(s)	88, 291, 361, 444, 778
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 113, 247
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	3 cut(s)	69, 183, 366
BstSLI	GKGCMC	1 cut(s)	865
BstV1I	GCAGC	3 cut(s)	52, 55, 83
BstX2I	RGATCY	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	444
Bsu15I	ATCGAT	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	316
BsuTUI	ATCGAT	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	364, 805
BtsI	GCAGTG	2 cut(s)	666, 869
BtsIMutI	CAGTG	2 cut(s)	666, 869
Cac8I	GCNNGC	2 cut(s)	349, 691
CaiI	CAGNNNCTG	2 cut(s)	776, 871
CciI	TCATGA	1 cut(s)	609
ClaI	ATCGAT	1 cut(s)	276
Csp6I	GTAC	2 cut(s)	639, 758
CviAII	CATG	5 cut(s)	136, 348, 610, 761, 823
CviQI	GTAC	2 cut(s)	639, 758
DdeI	CTNAG	4 cut(s)	18, 33, 108, 591
DpnI	GATC	5 cut(s)	90, 293, 363, 446, 780
DpnII	GATC	5 cut(s)	88, 291, 361, 444, 778
DraI	TTTAAA	1 cut(s)	501
Eam1104I	CTCTTC	3 cut(s)	158, 168, 420
EarI	CTCTTC	3 cut(s)	158, 168, 420
Ecl136II	GAGCTC	2 cut(s)	133, 430
Eco24I	GRGCYC	3 cut(s)	135, 432, 859
Eco53kI	GAGCTC	2 cut(s)	133, 430
Eco88I	CYCGRG	1 cut(s)	431
EcoICRI	GAGCTC	2 cut(s)	133, 430
EcoRII	CCWGG	1 cut(s)	54
EcoT38I	GRGCYC	3 cut(s)	135, 432, 859
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	5 cut(s)	139, 351, 613, 764, 826
FalI	AAGNNNNNCTT	1 cut(s)	973
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	5 cut(s)	135, 347, 609, 760, 822
Fnu4HI	GCNGC	3 cut(s)	41, 69, 72
FokI	GGATG	2 cut(s)	371, 812
FriOI	GRGCYC	3 cut(s)	135, 432, 859
Fsp4HI	GCNGC	3 cut(s)	41, 69, 72
FspBI	CTAG	3 cut(s)	117, 810, 852
GluI	GCNGC	3 cut(s)	41, 69, 72
HapII	CCGG	1 cut(s)	968
Hin1II	CATG	5 cut(s)	139, 351, 613, 764, 826
HinfI	GANTC	4 cut(s)	302, 740, 806, 845
HpaII	CCGG	1 cut(s)	968
HphI	GGTGA	4 cut(s)	451, 575, 815, 854
Hpy166II	GTNNAC	3 cut(s)	604, 617, 863
Hpy188I	TCNGA	5 cut(s)	21, 517, 544, 745, 820
Hpy188III	TCNNGA	5 cut(s)	295, 433, 610, 752, 852
Hpy8I	GTNNAC	3 cut(s)	604, 617, 863
HpyAV	CCTTC	3 cut(s)	262, 292, 950
HpyCH4IV	ACGT	2 cut(s)	577, 929
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 113, 247
HpyF3I	CTNAG	4 cut(s)	18, 33, 108, 591
HpySE526I	ACGT	2 cut(s)	577, 929
Hsp92II	CATG	5 cut(s)	139, 351, 613, 764, 826
Kzo9I	GATC	5 cut(s)	88, 291, 361, 444, 778
LguI	GCTCTTC	2 cut(s)	168, 420
LmnI	GCTCC	3 cut(s)	130, 247, 709
LpnPI	CCDG	9 cut(s)	41, 68, 280, 378, 438, 454, 851, 935, 981
Lsp1109I	GCAGC	3 cut(s)	52, 55, 83
LweI	GCATC	3 cut(s)	646, 676, 763
MaeI	CTAG	3 cut(s)	117, 810, 852
MaeII	ACGT	2 cut(s)	577, 929
MaeIII	GTNAC	2 cut(s)	573, 803
MalI	GATC	5 cut(s)	90, 293, 363, 446, 780
MboI	GATC	5 cut(s)	88, 291, 361, 444, 778
MboII	GAAGA	8 cut(s)	175, 185, 214, 434, 437, 452, 541, 965
MflI	RGATCY	1 cut(s)	444
MhlI	GDGCHC	4 cut(s)	135, 432, 859, 865
MluCI	AATT	9 cut(s)	7, 22, 47, 146, 218, 486, 518, 681, 765
MlyI	GAGTC	1 cut(s)	800
MmeI	TCCRAC	2 cut(s)	356, 687
MseI	TTAA	7 cut(s)	45, 149, 210, 264, 500, 621, 795
MspI	CCGG	1 cut(s)	968
MspR9I	CCNGG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	3 cut(s)	77, 113, 247
NdeII	GATC	5 cut(s)	88, 291, 361, 444, 778
NlaIII	CATG	5 cut(s)	139, 351, 613, 764, 826
NlaIV	GGNNCC	1 cut(s)	711
NmuCI	GTSAC	1 cut(s)	803
NspI	RCATGY	1 cut(s)	351
PaeI	GCATGC	1 cut(s)	351
PaeR7I	CTCGAG	1 cut(s)	431
PagI	TCATGA	1 cut(s)	609
PciSI	GCTCTTC	2 cut(s)	168, 420
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	3 cut(s)	302, 740, 845
PkrI	GCNGC	3 cut(s)	42, 70, 73
PleI	GAGTC	1 cut(s)	800
PpsI	GAGTC	1 cut(s)	800
Psp124BI	GAGCTC	2 cut(s)	135, 432
Psp1406I	AACGTT	1 cut(s)	929
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	711
PstI	CTGCAG	3 cut(s)	73, 187, 370
PstNI	CAGNNNCTG	2 cut(s)	776, 871
PsuI	RGATCY	1 cut(s)	444
RsaI	GTAC	2 cut(s)	640, 759
RsaNI	GTAC	2 cut(s)	639, 758
SacI	GAGCTC	2 cut(s)	135, 432
SapI	GCTCTTC	2 cut(s)	168, 420
SaqAI	TTAA	7 cut(s)	45, 149, 210, 264, 500, 621, 795
SatI	GCNGC	3 cut(s)	41, 69, 72
Sau3AI	GATC	5 cut(s)	88, 291, 361, 444, 778
SchI	GAGTC	1 cut(s)	800
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	4 cut(s)	135, 432, 859, 865
SfaNI	GCATC	3 cut(s)	646, 676, 763
SfcI	CTRYAG	3 cut(s)	69, 183, 366
Sfr274I	CTCGAG	1 cut(s)	431
SlaI	CTCGAG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
SphI	GCATGC	1 cut(s)	351
Sse9I	AATT	9 cut(s)	7, 22, 47, 146, 218, 486, 518, 681, 765
SspI	AATATT	1 cut(s)	899
SspMI	CTAG	3 cut(s)	117, 810, 852
SstI	GAGCTC	2 cut(s)	135, 432
StyD4I	CCNGG	1 cut(s)	54
TaiI	ACGT	2 cut(s)	580, 932
TaqI	TCGA	3 cut(s)	276, 432, 985
TasI	AATT	9 cut(s)	7, 22, 47, 146, 218, 486, 518, 681, 765
TatI	WGTACW	2 cut(s)	638, 757
TfiI	GAWTC	3 cut(s)	302, 740, 845
Tru1I	TTAA	7 cut(s)	45, 149, 210, 264, 500, 621, 795
Tru9I	TTAA	7 cut(s)	45, 149, 210, 264, 500, 621, 795
TscAI	CASTG	2 cut(s)	666, 876
TseFI	GTSAC	1 cut(s)	803
TseI	GCWGC	3 cut(s)	40, 68, 71
Tsp45I	GTSAC	1 cut(s)	803
TspDTI	ATGAA	2 cut(s)	405, 777
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	2 cut(s)	666, 876
VneI	GTGCAC	1 cut(s)	861
XapI	RAATTY	3 cut(s)	7, 22, 47
XbaI	TCTAGA	1 cut(s)	851
XceI	RCATGY	1 cut(s)	351
XhoI	CTCGAG	1 cut(s)	431
XspI	CTAG	3 cut(s)	117, 810, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.