Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010886.1

Orthogroup ID

OG0002360

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 4355

Gene Structure 4355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010886.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 598 bp

atggatgaagatttaagcgaaaaggagtcattgctggctcgcattcagcaggtggaacatgagcgtgatgaattacgtaaagacatcgaacaattgtgtatgcagcaagctgggccaggctaccttgttgtggctactaagatgcattttcaaaggacagctggcttggagcaggagattgagagcctgaaaaagaagctagctacttgctcaagagagaacgtgaatcttcaagaggagctctctgaggcttatagaatcaaaggccagttggctgatttgcataatgcagaggttgcaaagaatttggaagctgagaagcagcttaaatttttccagggctgtgtagctgcagcttttgccgaacgggatcagtccataatggaggctgagacggctagggagaaagaggagctcatgtcaaagaaattgagtgagatagagaagaggttagaagagcatactgcagattgttttgaacagaagaaacttaatgataaattgcaaactgatttagcaatgcaagaggagcagaatgcaacttttaagaaggtgatggcttggctttctgtctctttctcgtgtcatgctacccgtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

22.92

Weight (kDa)

5.15

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14680 AT2G14680 AT2G14680 AT2G14680 AT2G14680 AT2G14680 AT2G14680 AT2G14680
fragaria_vesca	FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770 FvH4_2g03770
malus_domestica	MD05G1101600.v1.1 MD10G1106700.v1.1
prunus_persica	Prupe.8G146100_v2.0.a1 Prupe.8G146100_v2.0.a1
pyrus_communis	pycom05g09990 pycom10g09190
rosa_chinensis	RchiOBHm_Chr6g0252731
rosa_laevigata	RLG00000015066 RLG00000015072
rosa_multiflora	Rmu_sc0000829.1_g000045 Rmu_sc0010886.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212440
rosa_rugosa	Rorug05G0538400
rosa_samantha	Rh6AG054600 Rh6BG048500 Rh6CG047500 Rh6DG043000
rosa_wichuraiana	Rw6G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	40
Acc36I	ACCTGC	1 cut(s)	40
AclWI	GGATC	1 cut(s)	378
AcsI	RAATTY	2 cut(s)	304, 329
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	152, 233, 479
AjnI	CCWGG	2 cut(s)	115, 336
Alw21I	GWGCWC	2 cut(s)	243, 417
Alw26I	GTCTC	2 cut(s)	386, 577
AlwI	GGATC	1 cut(s)	378
AoxI	GGCC	2 cut(s)	113, 265
ApeKI	GCWGC	4 cut(s)	103, 322, 350, 353
ApoI	RAATTY	2 cut(s)	304, 329
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	565
AsuNHI	GCTAGC	1 cut(s)	199
BanII	GRGCYC	2 cut(s)	243, 417
BauI	CACGAG	1 cut(s)	580
Bbv12I	GWGCWC	2 cut(s)	243, 417
BbvI	GCAGC	4 cut(s)	115, 334, 337, 365
BccI	CCATC	1 cut(s)	550
BceAI	ACGGC	1 cut(s)	411
BciT130I	CCWGG	2 cut(s)	117, 338
BcoDI	GTCTC	2 cut(s)	386, 577
BfaI	CTAG	2 cut(s)	200, 399
BfmI	CTRYAG	2 cut(s)	351, 465
BfuAI	ACCTGC	1 cut(s)	40
BisI	GCNGC	4 cut(s)	104, 323, 351, 354
BlsI	GCNGC	4 cut(s)	105, 324, 352, 355
Bme1390I	CCNGG	2 cut(s)	117, 338
BmgT120I	GGNCC	1 cut(s)	113
BmrFI	CCNGG	2 cut(s)	117, 338
BmsI	GCATC	1 cut(s)	132
BmtI	GCTAGC	1 cut(s)	203
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
BpuEI	CTTGAG	1 cut(s)	196
BsaAI	YACGTR	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	337
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	2 cut(s)	29, 525
BseBI	CCWGG	2 cut(s)	117, 338
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMI	GCAATG	2 cut(s)	29, 525
BseMII	CTCAG	3 cut(s)	237, 306, 381
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	3 cut(s)	251, 425, 542
BseXI	GCAGC	4 cut(s)	115, 334, 337, 365
BseYI	CCCAGC	1 cut(s)	110
BshFI	GGCC	2 cut(s)	115, 267
BsiHKAI	GWGCWC	2 cut(s)	243, 417
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	2 cut(s)	386, 577
BsmBI	CGTCTC	1 cut(s)	386
BsmI	GAATGC	2 cut(s)	42, 541
BsnI	GGCC	2 cut(s)	115, 267
Bsp1286I	GDGCHC	2 cut(s)	243, 417
Bsp143I	GATC	1 cut(s)	370
BspANI	GGCC	2 cut(s)	115, 267
BspCNI	CTCAG	3 cut(s)	238, 307, 382
BspMAI	CTGCAG	2 cut(s)	355, 469
BspMI	ACCTGC	1 cut(s)	40
BspOI	GCTAGC	1 cut(s)	203
BspPI	GGATC	1 cut(s)	378
BspQI	GCTCTTC	1 cut(s)	450
BsrDI	GCAATG	2 cut(s)	29, 525
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	1 cut(s)	370
BssSI	CACGAG	1 cut(s)	580
Bst2BI	CACGAG	1 cut(s)	580
Bst2UI	CCWGG	2 cut(s)	117, 338
Bst6I	CTCTTC	2 cut(s)	440, 450
BstAPI	GCANNNNNTGC	2 cut(s)	296, 359
BstBAI	YACGTR	1 cut(s)	77
BstC8I	GCNNGC	5 cut(s)	36, 40, 108, 163, 201
BstDEI	CTNAG	4 cut(s)	138, 246, 315, 390
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	373
BstMAI	GTCTC	2 cut(s)	386, 577
BstMBI	GATC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	5 cut(s)	112, 296, 359, 395, 529
BstNI	CCWGG	2 cut(s)	117, 338
BstSCI	CCNGG	2 cut(s)	115, 336
BstSFI	CTRYAG	2 cut(s)	351, 465
BstSNI	TACGTA	1 cut(s)	77
BstV1I	GCAGC	4 cut(s)	115, 334, 337, 365
BsuRI	GGCC	2 cut(s)	115, 267
BtsCI	GGATG	1 cut(s)	10
BveI	ACCTGC	1 cut(s)	40
Cac8I	GCNNGC	5 cut(s)	36, 40, 108, 163, 201
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	3 cut(s)	59, 418, 587
DdeI	CTNAG	4 cut(s)	138, 246, 315, 390
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
Eam1104I	CTCTTC	2 cut(s)	440, 450
EarI	CTCTTC	2 cut(s)	440, 450
Ecl136II	GAGCTC	2 cut(s)	241, 415
Eco105I	TACGTA	1 cut(s)	77
Eco24I	GRGCYC	2 cut(s)	243, 417
Eco53kI	GAGCTC	2 cut(s)	241, 415
EcoICRI	GAGCTC	2 cut(s)	241, 415
EcoRII	CCWGG	2 cut(s)	115, 336
EcoT22I	ATGCAT	1 cut(s)	147
EcoT38I	GRGCYC	2 cut(s)	243, 417
Esp3I	CGTCTC	1 cut(s)	386
FaeI	CATG	3 cut(s)	62, 421, 590
FaiI	YATR	8 cut(s)	60, 101, 255, 285, 380, 419, 462, 588
FatI	CATG	3 cut(s)	58, 417, 586
Fnu4HI	GCNGC	4 cut(s)	104, 323, 351, 354
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	2 cut(s)	243, 417
Fsp4HI	GCNGC	4 cut(s)	104, 323, 351, 354
FspBI	CTAG	2 cut(s)	200, 399
GluI	GCNGC	4 cut(s)	104, 323, 351, 354
GsaI	CCCAGC	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	115, 267
Hin1II	CATG	3 cut(s)	62, 421, 590
HinfI	GANTC	3 cut(s)	26, 226, 258
HphI	GGTGA	1 cut(s)	565
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	2 cut(s)	213, 233
HpyAV	CCTTC	1 cut(s)	544
HpyCH4IV	ACGT	2 cut(s)	76, 222
HpyF10VI	GCNNNNNNNGC	5 cut(s)	112, 296, 359, 395, 529
HpyF3I	CTNAG	4 cut(s)	138, 246, 315, 390
HpySE526I	ACGT	2 cut(s)	76, 222
Hsp92II	CATG	3 cut(s)	62, 421, 590
Kzo9I	GATC	1 cut(s)	370
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	4 cut(s)	169, 238, 412, 529
Lsp1109I	GCAGC	4 cut(s)	115, 334, 337, 365
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	2 cut(s)	200, 399
MaeII	ACGT	2 cut(s)	76, 222
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	5 cut(s)	20, 221, 457, 467, 496
MfeI	CAATTG	1 cut(s)	92
MhlI	GDGCHC	2 cut(s)	243, 417
MluCI	AATT	6 cut(s)	71, 92, 304, 329, 428, 500
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	7 cut(s)	229, 241, 286, 379, 403, 441, 520
Mph1103I	ATGCAT	1 cut(s)	147
MseI	TTAA	4 cut(s)	14, 327, 492, 546
MslI	CAYNNNNRTG	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	117, 338
MunI	CAATTG	1 cut(s)	92
Mva1269I	GAATGC	2 cut(s)	42, 541
MvaI	CCWGG	2 cut(s)	117, 338
MwoI	GCNNNNNNNGC	5 cut(s)	112, 296, 359, 395, 529
NdeII	GATC	1 cut(s)	370
NheI	GCTAGC	1 cut(s)	199
NlaIII	CATG	3 cut(s)	62, 421, 590
NsiI	ATGCAT	1 cut(s)	147
PaqCI	CACCTGC	1 cut(s)	40
PciSI	GCTCTTC	1 cut(s)	450
PctI	GAATGC	2 cut(s)	42, 541
PfeI	GAWTC	2 cut(s)	226, 258
PkrI	GCNGC	4 cut(s)	105, 324, 352, 355
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Ppu21I	YACGTR	1 cut(s)	77
Psp124BI	GAGCTC	2 cut(s)	243, 417
Psp6I	CCWGG	2 cut(s)	115, 336
PspFI	CCCAGC	1 cut(s)	110
PspGI	CCWGG	2 cut(s)	115, 336
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	2 cut(s)	355, 469
PvuII	CAGCTG	1 cut(s)	161
RseI	CAYNNNNRTG	1 cut(s)	63
SacI	GAGCTC	2 cut(s)	243, 417
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	4 cut(s)	14, 327, 492, 546
SatI	GCNGC	4 cut(s)	104, 323, 351, 354
Sau3AI	GATC	1 cut(s)	370
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	2 cut(s)	117, 338
SduI	GDGCHC	2 cut(s)	243, 417
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	2 cut(s)	351, 465
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
SnaBI	TACGTA	1 cut(s)	77
Sse9I	AATT	6 cut(s)	71, 92, 304, 329, 428, 500
SspMI	CTAG	2 cut(s)	200, 399
SstI	GAGCTC	2 cut(s)	243, 417
StyD4I	CCNGG	2 cut(s)	115, 336
TaiI	ACGT	2 cut(s)	79, 225
TaqI	TCGA	1 cut(s)	87
TasI	AATT	6 cut(s)	71, 92, 304, 329, 428, 500
TfiI	GAWTC	2 cut(s)	226, 258
Tru1I	TTAA	4 cut(s)	14, 327, 492, 546
Tru9I	TTAA	4 cut(s)	14, 327, 492, 546
TseI	GCWGC	4 cut(s)	103, 322, 350, 353
TspDTI	ATGAA	2 cut(s)	21, 84
XapI	RAATTY	2 cut(s)	304, 329
XspI	CTAG	2 cut(s)	200, 399
Zsp2I	ATGCAT	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.