Rmu_sc0000829.1_g000045

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000829.1
Physical Location & Seq
Reverse (-)
183896 .. 190769
6874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000829.1_g000045.1.cds

Sequence Viewer

Length: 1806 bp
atgcatattagtttcatagtttcttatgcaagagagtgcaagactgatatgtggaatttctttactctctttactcagaatttggaagctgagaagcagcttaaatttttccagggctgtgtagctgcagcttttgccgaacgggatcagtccataatggaggctgagacggctagggagaaagaggagctcatgtcaaagaaattgagtgagatagagaagaggttagaagagcatactgcagattgttttgaacagaagaaacttaatgataaattgcaaactgatttagcaattcaagaggagcagaatgcaacttttaagaaggtcatcgataagttttatgagatcaggcaggattctttggagggatttgggaatacaagttgggacaccaaatgtgcatgccttttggatgatcctgcagaatggtggagtttcaatgacacttctacatcaaaatatattagttcattagaagaagagctcaagagggtgaggatctctgctggtaatcttcaaaacaggctacgagtgggtttggaaattgaaaatcatttaaagaggagggtttcggaattggaaaagaagaaaatccgttcagatggaatgataaaaaaggagatggcagagttacatcatcaccattctcagcataaagttcacatcatgagtttacttaatgagggaagcagttgtatcaaatcaataattgatgcagtggagaaaaagtgtcggcaaattgatgcaagcagactacaaaagttggagccacctatgggagatgtaaaacgatgcgaatctgaatgtcaagatgtacatgaaattacagatgctgatccccaagtggtatttaaggattgtgaccctagcttatcagacatggtggcagttggggagggtgatttctctagagcccgtgcacaggcactgcaagacaaggtgttctgcaaagatggtgaccctagcttatcagatatggtggcagttggggagggtgattcctctaaagcccttgcacaggcactggaagacaaggttgcaacgctattgcttttatcacagcaggaagaaagacatttactggacagaaatgtgaatgcagctcttcaaagtaaaatagatgagcttcagagaaacctattgcaggttaccaatgagaaggtccaagctctaatggagatggcacaattaaagcaggaatatcatcaactcaaagagagaatgggtcaggagacgaaaggaggcaattcatctactcaagttggggacaggagagttgttacacatgaaagaggtggaaaactaaagagcttgctgaagaaaacgtacttgagccgttgggttggaaatctagatcttaggggaaatgaagctgaatctgacctaaatagcatggagtttgtgaggatgaagattgaaaatgcgacccttagggaaaccattggaagtatcgaacatctgactactacagttcataggcttcgtctatcgcttttaaaggccaaggagatggtgacttctggagactcgatgcttactagcatgttagaaactctagacaacattattaacgaggcaaaactagtgaagactgcacttggaagttccctaccacttagttggtcagcagaagcggatgtggaattcagcggtcatagtgttagcagtgagcctggtatcgtatattgggagcccagccatgagaagatagattcagtttatgctgtggggtttgagatggtggaactcctgatattagcatcgcagatattaaaggacaacacaagcaaaagtgggtcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

601

Amino Acids

68.03

Weight (kDa)

5.46

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1138
AciI CCGC 2 cut(s) 1637, 1653
AclWI GGATC 4 cut(s) 153, 413, 509, 833
AcsI RAATTY 4 cut(s) 55, 79, 104, 1646
AcuI CTGAAG 2 cut(s) 1115, 1340
AfaI GTAC 2 cut(s) 819, 1331
AfiI CCNNNNNNNGG 4 cut(s) 779, 925, 1021, 1147
AgsI TTSAA 7 cut(s) 254, 299, 442, 521, 551, 1112, 1421
AhlI ACTAGT 1 cut(s) 1585
AjnI CCWGG 2 cut(s) 111, 1675
Alw21I GWGCWC 3 cut(s) 192, 489, 925
Alw26I GTCTC 3 cut(s) 161, 1229, 1521
Alw44I GTGCAC 1 cut(s) 921
AlwI GGATC 4 cut(s) 153, 413, 509, 833
AlwNI CAGNNNCTG 3 cut(s) 836, 931, 1027
AoxI GGCC 1 cut(s) 1503
ApaLI GTGCAC 1 cut(s) 921
ApeKI GCWGC 4 cut(s) 97, 125, 128, 1103
ApoI RAATTY 4 cut(s) 55, 79, 104, 1646
AspS9I GGNCC 2 cut(s) 1165, 1800
AsuHPI GGTGA 6 cut(s) 508, 635, 914, 971, 1010, 1528
AvaII GGWCC 2 cut(s) 1165, 1800
AxyI CCTNAGG 1 cut(s) 1433
BaeGI GKGCMC 1 cut(s) 925
BanII GRGCYC 4 cut(s) 192, 489, 919, 1698
BarI GAAGNNNNNNTAC 2 cut(s) 1313, 1345
BbsI GAAGAC 2 cut(s) 1038, 1598
Bbv12I GWGCWC 3 cut(s) 192, 489, 925
BbvI GCAGC 4 cut(s) 109, 112, 140, 1115
BccI CCATC 6 cut(s) 599, 619, 950, 1177, 1507, 1735
BceAI ACGGC 2 cut(s) 186, 1323
BciT130I CCWGG 2 cut(s) 113, 1677
BcoDI GTCTC 3 cut(s) 161, 1229, 1521
BcuI ACTAGT 1 cut(s) 1585
BfaI CTAG 8 cut(s) 174, 870, 912, 966, 1355, 1542, 1559, 1586
BfmI CTRYAG 4 cut(s) 126, 240, 423, 1470
BfuAI ACCTGC 1 cut(s) 1138
BglII AGATCT 1 cut(s) 1357
BisI GCNGC 4 cut(s) 98, 126, 129, 1104
BlsI GCNGC 4 cut(s) 99, 127, 130, 1105
Bme1390I CCNGG 2 cut(s) 113, 1677
Bme18I GGWCC 2 cut(s) 1165, 1800
BmgT120I GGNCC 2 cut(s) 1165, 1800
BmiI GGNNCC 3 cut(s) 771, 1695, 1801
BmrFI CCNGG 2 cut(s) 113, 1677
BmsI GCATC 6 cut(s) 706, 736, 785, 823, 1524, 1772
BpiI GAAGAC 2 cut(s) 1038, 1598
BpmI CTGGAG 1 cut(s) 1545
BpuEI CTTGAG 3 cut(s) 473, 1245, 1354
Bsa29I ATCGAT 1 cut(s) 333
BsaBI GATNNNNATC 2 cut(s) 799, 837
BsaJI CCNNGG 2 cut(s) 112, 1506
BsaXI ACNNNNNCTCC 4 cut(s) 179, 209, 716, 746
Bsc4I CCNNNNNNNGG 4 cut(s) 779, 925, 1021, 1147
Bse1I ACTGG 2 cut(s) 1032, 1089
Bse21I CCTNAGG 1 cut(s) 1433
Bse8I GATNNNNATC 2 cut(s) 799, 837
BseBI CCWGG 2 cut(s) 113, 1677
BseCI ATCGAT 1 cut(s) 333
BseDI CCNNGG 2 cut(s) 112, 1506
BseGI GGATG 3 cut(s) 421, 1416, 1645
BseJI GATNNNNATC 2 cut(s) 799, 837
BseLI CCNNNNNNNGG 4 cut(s) 779, 925, 1021, 1147
BseMII CTCAG 4 cut(s) 81, 89, 156, 665
BseNI ACTGG 2 cut(s) 1032, 1089
BseRI GAGGAG 3 cut(s) 200, 317, 580
BseSI GKGCMC 1 cut(s) 925
BseXI GCAGC 4 cut(s) 109, 112, 140, 1115
BseYI CCCAGC 1 cut(s) 1697
BsgI GTGCAG 1 cut(s) 1581
BshFI GGCC 1 cut(s) 1505
BshVI ATCGAT 1 cut(s) 333
BsiHKAI GWGCWC 3 cut(s) 192, 489, 925
BslFI GGGAC 2 cut(s) 404, 1283
BslI CCNNNNNNNGG 4 cut(s) 779, 925, 1021, 1147
BsmAI GTCTC 3 cut(s) 161, 1229, 1521
BsmBI CGTCTC 2 cut(s) 161, 1229
BsmFI GGGAC 2 cut(s) 404, 1283
BsmI GAATGC 2 cut(s) 316, 1105
BsnI GGCC 1 cut(s) 1505
Bsp1286I GDGCHC 5 cut(s) 192, 489, 919, 925, 1698
Bsp1407I TGTACA 1 cut(s) 817
Bsp143I GATC 6 cut(s) 145, 348, 418, 501, 838, 1357
BspACI CCGC 2 cut(s) 1637, 1653
BspANI GGCC 1 cut(s) 1505
BspCNI CTCAG 4 cut(s) 82, 88, 157, 664
BspDI ATCGAT 1 cut(s) 333
BspHI TCATGA 1 cut(s) 669
BspLI GGNNCC 3 cut(s) 771, 1695, 1801
BspMAI CTGCAG 3 cut(s) 130, 244, 427
BspMI ACCTGC 1 cut(s) 1138
BspPI GGATC 4 cut(s) 153, 413, 509, 833
BspQI GCTCTTC 3 cut(s) 225, 477, 1113
BsrGI TGTACA 1 cut(s) 817
BsrI ACTGG 2 cut(s) 1032, 1089
BssECI CCNNGG 2 cut(s) 112, 1506
BssMI GATC 6 cut(s) 145, 348, 418, 501, 838, 1357
BssT1I CCWWGG 1 cut(s) 1506
Bst2UI CCWGG 2 cut(s) 113, 1677
Bst4CI ACNGT 1 cut(s) 1474
Bst6I CTCTTC 4 cut(s) 215, 225, 477, 1113
BstAPI GCANNNNNTGC 1 cut(s) 134
BstAUI TGTACA 1 cut(s) 817
BstC8I GCNNGC 3 cut(s) 406, 751, 1316
BstDEI CTNAG 7 cut(s) 75, 90, 165, 651, 1361, 1433, 1619
BstEII GGTNACC 2 cut(s) 959, 1150
BstENI CCTNNNNNAGG 2 cut(s) 1019, 1145
BstF5I GGATG 3 cut(s) 421, 1416, 1645
BstKTI GATC 6 cut(s) 148, 351, 421, 504, 841, 1360
BstMAI GTCTC 3 cut(s) 161, 1229, 1521
BstMBI GATC 6 cut(s) 145, 348, 418, 501, 838, 1357
BstMWI GCNNNNNNNGC 2 cut(s) 134, 170
BstNI CCWGG 2 cut(s) 113, 1677
BstNSI RCATGY 2 cut(s) 408, 1549
BstPI GGTNACC 2 cut(s) 959, 1150
BstSCI CCNGG 2 cut(s) 111, 1675
BstSFI CTRYAG 4 cut(s) 126, 240, 423, 1470
BstSLI GKGCMC 1 cut(s) 925
BstV1I GCAGC 4 cut(s) 109, 112, 140, 1115
BstV2I GAAGAC 2 cut(s) 1038, 1598
BstX2I RGATCY 2 cut(s) 501, 1357
BstXI CCANNNNNNTGG 2 cut(s) 1513, 1623
BstYI RGATCY 2 cut(s) 501, 1357
Bsu15I ATCGAT 1 cut(s) 333
Bsu36I CCTNAGG 1 cut(s) 1433
BsuRI GGCC 1 cut(s) 1505
BsuTUI ATCGAT 1 cut(s) 333
BtgZI GCGATG 1 cut(s) 1749
BtsCI GGATG 3 cut(s) 421, 1416, 1645
BtsI GCAGTG 3 cut(s) 726, 929, 1675
BtsIMutI CAGTG 4 cut(s) 726, 929, 1025, 1675
BveI ACCTGC 1 cut(s) 1138
Cac8I GCNNGC 3 cut(s) 406, 751, 1316
CaiI CAGNNNCTG 3 cut(s) 836, 931, 1027
CciI TCATGA 1 cut(s) 669
Cfr13I GGNCC 2 cut(s) 1165, 1800
ClaI ATCGAT 1 cut(s) 333
Csp6I GTAC 2 cut(s) 818, 1330
CviAII CATG 9 cut(s) 193, 405, 670, 821, 883, 1289, 1396, 1546, 1703
CviQI GTAC 2 cut(s) 818, 1330
DdeI CTNAG 7 cut(s) 75, 90, 165, 651, 1361, 1433, 1619
DpnI GATC 6 cut(s) 147, 350, 420, 503, 840, 1359
DpnII GATC 6 cut(s) 145, 348, 418, 501, 838, 1357
DraI TTTAAA 2 cut(s) 561, 1500
Eam1104I CTCTTC 4 cut(s) 215, 225, 477, 1113
EarI CTCTTC 4 cut(s) 215, 225, 477, 1113
Ecl136II GAGCTC 2 cut(s) 190, 487
Eco130I CCWWGG 1 cut(s) 1506
Eco24I GRGCYC 4 cut(s) 192, 489, 919, 1698
Eco47I GGWCC 2 cut(s) 1165, 1800
Eco53kI GAGCTC 2 cut(s) 190, 487
Eco57I CTGAAG 2 cut(s) 1115, 1340
Eco81I CCTNAGG 1 cut(s) 1433
Eco91I GGTNACC 2 cut(s) 959, 1150
EcoICRI GAGCTC 2 cut(s) 190, 487
EcoNI CCTNNNNNAGG 2 cut(s) 1019, 1145
EcoO109I RGGNCCY 1 cut(s) 1800
EcoO65I GGTNACC 2 cut(s) 959, 1150
EcoRI GAATTC 1 cut(s) 1646
EcoRII CCWGG 2 cut(s) 111, 1675
EcoT14I CCWWGG 1 cut(s) 1506
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 4 cut(s) 192, 489, 919, 1698
ErhI CCWWGG 1 cut(s) 1506
Esp3I CGTCTC 2 cut(s) 161, 1229
FaeI CATG 9 cut(s) 196, 408, 673, 824, 886, 1292, 1399, 1549, 1706
FaqI GGGAC 2 cut(s) 404, 1283
FatI CATG 9 cut(s) 192, 404, 669, 820, 882, 1288, 1395, 1545, 1702
Fnu4HI GCNGC 4 cut(s) 98, 126, 129, 1104
FokI GGATG 3 cut(s) 428, 1423, 1652
FriOI GRGCYC 4 cut(s) 192, 489, 919, 1698
Fsp4HI GCNGC 4 cut(s) 98, 126, 129, 1104
FspBI CTAG 8 cut(s) 174, 870, 912, 966, 1355, 1542, 1559, 1586
GluI GCNGC 4 cut(s) 98, 126, 129, 1104
GsaI CCCAGC 1 cut(s) 1701
GsuI CTGGAG 1 cut(s) 1545
HaeIII GGCC 1 cut(s) 1505
Hin1II CATG 9 cut(s) 196, 408, 673, 824, 886, 1292, 1399, 1549, 1706
HinfI GANTC 6 cut(s) 359, 800, 1001, 1379, 1529, 1715
HphI GGTGA 6 cut(s) 508, 635, 914, 971, 1010, 1528
Hpy166II GTNNAC 3 cut(s) 664, 677, 923
Hpy188I TCNGA 9 cut(s) 78, 577, 604, 805, 880, 976, 1134, 1384, 1464
Hpy8I GTNNAC 3 cut(s) 664, 677, 923
HpyAV CCTTC 2 cut(s) 319, 1156
HpyCH4III ACNGT 1 cut(s) 1474
HpyCH4IV ACGT 1 cut(s) 1328
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 170
HpyF3I CTNAG 7 cut(s) 75, 90, 165, 651, 1361, 1433, 1619
HpySE526I ACGT 1 cut(s) 1328
Hsp92II CATG 9 cut(s) 196, 408, 673, 824, 886, 1292, 1399, 1549, 1706
Kzo9I GATC 6 cut(s) 145, 348, 418, 501, 838, 1357
LguI GCTCTTC 3 cut(s) 225, 477, 1113
LmnI GCTCC 4 cut(s) 187, 304, 769, 1693
Lsp1109I GCAGC 4 cut(s) 109, 112, 140, 1115
LweI GCATC 6 cut(s) 706, 736, 785, 823, 1524, 1772
MaeI CTAG 8 cut(s) 174, 870, 912, 966, 1355, 1542, 1559, 1586
MaeII ACGT 1 cut(s) 1328
MaeIII GTNAC 6 cut(s) 633, 863, 959, 1150, 1282, 1516
MalI GATC 6 cut(s) 147, 350, 420, 503, 840, 1359
MboI GATC 6 cut(s) 145, 348, 418, 501, 838, 1357
MflI RGATCY 2 cut(s) 501, 1357
MhlI GDGCHC 5 cut(s) 192, 489, 919, 925, 1698
MlyI GAGTC 1 cut(s) 1523
MmeI TCCRAC 2 cut(s) 747, 1327
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 1653
MspR9I CCNGG 2 cut(s) 113, 1677
Mva1269I GAATGC 2 cut(s) 316, 1105
MvaI CCWGG 2 cut(s) 113, 1677
MwoI GCNNNNNNNGC 2 cut(s) 134, 170
NdeII GATC 6 cut(s) 145, 348, 418, 501, 838, 1357
NlaIII CATG 9 cut(s) 196, 408, 673, 824, 886, 1292, 1399, 1549, 1706
NlaIV GGNNCC 3 cut(s) 771, 1695, 1801
NmuCI GTSAC 3 cut(s) 863, 959, 1516
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 408, 1549
PaeI GCATGC 1 cut(s) 408
PagI TCATGA 1 cut(s) 669
PciSI GCTCTTC 3 cut(s) 225, 477, 1113
PctI GAATGC 2 cut(s) 316, 1105
PfeI GAWTC 5 cut(s) 359, 800, 1001, 1379, 1715
PkrI GCNGC 4 cut(s) 99, 127, 130, 1105
PleI GAGTC 1 cut(s) 1523
PpsI GAGTC 1 cut(s) 1523
PpuMI RGGWCCY 1 cut(s) 1800
Psp124BI GAGCTC 2 cut(s) 192, 489
Psp5II RGGWCCY 1 cut(s) 1800
Psp6I CCWGG 2 cut(s) 111, 1675
PspEI GGTNACC 2 cut(s) 959, 1150
PspFI CCCAGC 1 cut(s) 1697
PspGI CCWGG 2 cut(s) 111, 1675
PspN4I GGNNCC 3 cut(s) 771, 1695, 1801
PspPI GGNCC 2 cut(s) 1165, 1800
PspPPI RGGWCCY 1 cut(s) 1800
PstI CTGCAG 3 cut(s) 130, 244, 427
PstNI CAGNNNCTG 3 cut(s) 836, 931, 1027
PsuI RGATCY 2 cut(s) 501, 1357
RsaI GTAC 2 cut(s) 819, 1331
RsaNI GTAC 2 cut(s) 818, 1330
SacI GAGCTC 2 cut(s) 192, 489
SapI GCTCTTC 3 cut(s) 225, 477, 1113
SatI GCNGC 4 cut(s) 98, 126, 129, 1104
Sau3AI GATC 6 cut(s) 145, 348, 418, 501, 838, 1357
Sau96I GGNCC 2 cut(s) 1165, 1800
SchI GAGTC 1 cut(s) 1523
ScrFI CCNGG 2 cut(s) 113, 1677
SduI GDGCHC 5 cut(s) 192, 489, 919, 925, 1698
SfaNI GCATC 6 cut(s) 706, 736, 785, 823, 1524, 1772
SfcI CTRYAG 4 cut(s) 126, 240, 423, 1470
SinI GGWCC 2 cut(s) 1165, 1800
SmlI CTYRAG 3 cut(s) 488, 1260, 1333
SmoI CTYRAG 3 cut(s) 488, 1260, 1333
SpeI ACTAGT 1 cut(s) 1585
SphI GCATGC 1 cut(s) 408
SsiI CCGC 2 cut(s) 1637, 1653
SspMI CTAG 8 cut(s) 174, 870, 912, 966, 1355, 1542, 1559, 1586
SstI GAGCTC 2 cut(s) 192, 489
StyD4I CCNGG 2 cut(s) 111, 1675
StyI CCWWGG 1 cut(s) 1506
TaaI ACNGT 1 cut(s) 1474
TaiI ACGT 1 cut(s) 1331
TaqI TCGA 3 cut(s) 333, 1455, 1532
TatI WGTACW 1 cut(s) 817
TfiI GAWTC 5 cut(s) 359, 800, 1001, 1379, 1715
TscAI CASTG 4 cut(s) 726, 936, 1032, 1675
TseFI GTSAC 3 cut(s) 863, 959, 1516
TseI GCWGC 4 cut(s) 97, 125, 128, 1103
Tsp45I GTSAC 3 cut(s) 863, 959, 1516
TspDTI ATGAA 8 cut(s) 4, 462, 837, 1242, 1305, 1386, 1427, 1466
TspGWI ACGGA 1 cut(s) 587
TspRI CASTG 4 cut(s) 726, 936, 1032, 1675
VneI GTGCAC 1 cut(s) 921
VpaK11BI GGWCC 2 cut(s) 1165, 1800
XagI CCTNNNNNAGG 2 cut(s) 1019, 1145
XapI RAATTY 4 cut(s) 55, 79, 104, 1646
XbaI TCTAGA 3 cut(s) 911, 1354, 1558
XceI RCATGY 2 cut(s) 408, 1549
XspI CTAG 8 cut(s) 174, 870, 912, 966, 1355, 1542, 1559, 1586
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.