Rh6BG048500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
8029403 .. 8039912
10510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG048500.1

Sequence Viewer

Length: 1434 bp
ATGGATGAAGATTTAAGCGAAAAGGAGTCGTTGCTGGCTCGCATTCAGCAGGTGGAACATGAGCGTGATGAATTACGTAAAGACATCGAACAATTGTGTATGCAGCAAGCTGGGCCAGGCTACCTTGTTGTGGCTACTAAGATGCATTTTCAAAGGACAGCTGGCTTGGAGCAGGAGATTGAGAACCTGAAAAAGAAGCTAGCTACTTGCTCAAGAGAGAACGTGAATCTTCAAGAGGAGCTCTCTGAGGCTTATAGAATCAAAGGCCAGTTGGCTGATTTGCATAATGCAGAGGTTGCAAAGAATTTGGAAGCTGAGAAGCAGCTTAAATTTTTCCAGGGCTGTGTAGCTGCAGCTTTTGCCGAACGGGATCAGTCCATAATGGAGGCTGAGACGGCTAGGGAGAAAGAGGAGCTCATGTCAAAGAAATTGAGTGAGATAGAGAAGAGGTTAGAAGAGCATACTGCAGATTGTTTTGAACAGAAGAAACTTAATGATAAATTTCAAACTGATTTAGCAATGCAAGAGGAGCAGAATGCAACTTTTAAGAAGGTCATCGATAAGTTTTATGAGATCAGGCAGGATTCTTTGGAGGGATTTGGGGATACAAGTTGGGACACCAAATGTGCATGCCTTTTGGATGATCCTGCAGAATGGTGGAGTTTCAATGACACTTCTACATCAAAATATATTAGTTCATTAGAAGAAGAGCTCGAGAGGGTGAGGATCTCTGCTGGTAATCTTCAAAACAGGCTACGAGTGGGTTTGGAAATTGAAAATCATTTAAAGAGGAGGGTTTCGGAATTGGAAAAGAAGAAAATCCGTTCAGATGGAATGATAAAAAAGGAGATGGCTGAGTTACATCATCACCATTCTCAGCATAAAGTTCACATCATGAGTTTACTTAATGAGGGAAGCAGTTGTATCAAATCAATAATTGATGCAGTGGAGAAAAAGTGTAGGCAAATTGATGCAAGCAGACTACAAAAGTTGGAGCCACCTATGGGAGATGTAAAGCAAGGTGAATCTGAATGTCAAGATGGACATGAAATTACAGATGCTGATCCCCAAGTGGTATTTAAGGATGGTGACCCTAGCTTATCAGACATGGTGGCAGTTGGGGAGGGTGATTTCTCTAGAGCCCGTGCACAGGCACTGCAAGACAAGGTGTTCTGCAAAGATGGTGACCCTAGCTTATCAGATATGGTGGCAGTTGGGGAGGGTGATTCCTCTAAAGCCCTTGCACAGGCACTGGAAGACAAGGTTGCAACGTTATTGCTTTTATCACAGCAGGAAGAAAGACATTTACTGGACAGAAATGTGAATGCAGCTCTTCAAAGTAAAATAGATGAGCTTCAGAGAAACCTATTGCAGGTAGTTTCTGTAAAGTACTTTTCTGTCAGGGTTATTTGTTCTCTGGTATCTGACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

477

Amino Acids

54.21

Weight (kDa)

5.11

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 40
Acc36I ACCTGC 2 cut(s) 40, 1363
AclI AACGTT 1 cut(s) 1271
AclWI GGATC 4 cut(s) 378, 638, 734, 1058
AcsI RAATTY 3 cut(s) 304, 329, 500
AcuI CTGAAG 1 cut(s) 1340
AfaI GTAC 1 cut(s) 1391
AfiI CCNNNNNNNGG 5 cut(s) 130, 1004, 1150, 1246, 1372
AgsI TTSAA 8 cut(s) 152, 233, 479, 506, 667, 746, 776, 1337
AjnI CCWGG 2 cut(s) 115, 336
Alw21I GWGCWC 4 cut(s) 243, 417, 714, 1150
Alw26I GTCTC 1 cut(s) 386
Alw44I GTGCAC 1 cut(s) 1146
AlwI GGATC 4 cut(s) 378, 638, 734, 1058
AlwNI CAGNNNCTG 3 cut(s) 1061, 1156, 1252
Ama87I CYCGRG 1 cut(s) 713
AoxI GGCC 2 cut(s) 113, 265
ApaLI GTGCAC 1 cut(s) 1146
ApeKI GCWGC 5 cut(s) 103, 322, 350, 353, 1328
ApoI RAATTY 3 cut(s) 304, 329, 500
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 7 cut(s) 733, 860, 1034, 1100, 1139, 1196, 1235
AsuNHI GCTAGC 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 713
BaeGI GKGCMC 1 cut(s) 1150
BanII GRGCYC 4 cut(s) 243, 417, 714, 1144
BbsI GAAGAC 1 cut(s) 1263
Bbv12I GWGCWC 4 cut(s) 243, 417, 714, 1150
BbvI GCAGC 5 cut(s) 115, 334, 337, 365, 1340
BccI CCATC 5 cut(s) 824, 844, 1034, 1079, 1175
BceAI ACGGC 1 cut(s) 411
BciT130I CCWGG 2 cut(s) 117, 338
BciVI GTATCC 1 cut(s) 598
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 5 cut(s) 200, 399, 1095, 1137, 1191
BfmI CTRYAG 3 cut(s) 351, 465, 648
BfuAI ACCTGC 2 cut(s) 40, 1363
BfuI GTATCC 1 cut(s) 598
BisI GCNGC 5 cut(s) 104, 323, 351, 354, 1329
BlsI GCNGC 5 cut(s) 105, 324, 352, 355, 1330
BmcAI AGTACT 1 cut(s) 1391
Bme1390I CCNGG 2 cut(s) 117, 338
BmeT110I CYCGRG 1 cut(s) 713
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 996
BmrFI CCNGG 2 cut(s) 117, 338
BmsI GCATC 4 cut(s) 132, 931, 961, 1048
BmtI GCTAGC 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 1263
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpuEI CTTGAG 1 cut(s) 196
Bsa29I ATCGAT 1 cut(s) 558
BsaAI YACGTR 1 cut(s) 77
BsaBI GATNNNNATC 1 cut(s) 1062
BsaJI CCNNGG 1 cut(s) 337
BsaXI ACNNNNNCTCC 4 cut(s) 404, 434, 941, 971
Bsc4I CCNNNNNNNGG 5 cut(s) 130, 1004, 1150, 1246, 1372
Bse1I ACTGG 3 cut(s) 268, 1257, 1314
Bse3DI GCAATG 1 cut(s) 525
Bse8I GATNNNNATC 1 cut(s) 1062
BseBI CCWGG 2 cut(s) 117, 338
BseCI ATCGAT 1 cut(s) 558
BseDI CCNNGG 1 cut(s) 337
BseGI GGATG 3 cut(s) 10, 646, 1090
BseJI GATNNNNATC 1 cut(s) 1062
BseLI CCNNNNNNNGG 5 cut(s) 130, 1004, 1150, 1246, 1372
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 5 cut(s) 237, 306, 381, 846, 890
BseNI ACTGG 3 cut(s) 268, 1257, 1314
BseRI GAGGAG 4 cut(s) 251, 425, 542, 805
BseSI GKGCMC 1 cut(s) 1150
BseXI GCAGC 5 cut(s) 115, 334, 337, 365, 1340
BseYI CCCAGC 1 cut(s) 110
BshFI GGCC 2 cut(s) 115, 267
BshVI ATCGAT 1 cut(s) 558
BsiHKAI GWGCWC 4 cut(s) 243, 417, 714, 1150
BsiHKCI CYCGRG 1 cut(s) 713
BslFI GGGAC 1 cut(s) 629
BslI CCNNNNNNNGG 5 cut(s) 130, 1004, 1150, 1246, 1372
BsmAI GTCTC 1 cut(s) 386
BsmBI CGTCTC 1 cut(s) 386
BsmFI GGGAC 1 cut(s) 629
BsmI GAATGC 3 cut(s) 42, 541, 1330
BsnI GGCC 2 cut(s) 115, 267
BsoBI CYCGRG 1 cut(s) 713
Bsp1286I GDGCHC 5 cut(s) 243, 417, 714, 1144, 1150
Bsp143I GATC 5 cut(s) 370, 573, 643, 726, 1063
BspANI GGCC 2 cut(s) 115, 267
BspCNI CTCAG 5 cut(s) 238, 307, 382, 847, 889
BspDI ATCGAT 1 cut(s) 558
BspHI TCATGA 1 cut(s) 894
BspLI GGNNCC 1 cut(s) 996
BspMAI CTGCAG 3 cut(s) 355, 469, 652
BspMI ACCTGC 2 cut(s) 40, 1363
BspOI GCTAGC 1 cut(s) 203
BspPI GGATC 4 cut(s) 378, 638, 734, 1058
BspQI GCTCTTC 3 cut(s) 450, 702, 1338
BsrDI GCAATG 1 cut(s) 525
BsrI ACTGG 3 cut(s) 268, 1257, 1314
BssECI CCNNGG 1 cut(s) 337
BssMI GATC 5 cut(s) 370, 573, 643, 726, 1063
Bst2UI CCWGG 2 cut(s) 117, 338
Bst6I CTCTTC 4 cut(s) 440, 450, 702, 1338
BstAPI GCANNNNNTGC 2 cut(s) 296, 359
BstBAI YACGTR 1 cut(s) 77
BstC8I GCNNGC 7 cut(s) 36, 40, 108, 163, 201, 631, 976
BstDEI CTNAG 6 cut(s) 138, 246, 315, 390, 855, 876
BstEII GGTNACC 2 cut(s) 1088, 1184
BstENI CCTNNNNNAGG 2 cut(s) 1244, 1370
BstF5I GGATG 3 cut(s) 10, 646, 1090
BstKTI GATC 5 cut(s) 373, 576, 646, 729, 1066
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 5 cut(s) 370, 573, 643, 726, 1063
BstMWI GCNNNNNNNGC 5 cut(s) 112, 296, 359, 395, 529
BstNI CCWGG 2 cut(s) 117, 338
BstNSI RCATGY 1 cut(s) 633
BstPI GGTNACC 2 cut(s) 1088, 1184
BstSCI CCNGG 2 cut(s) 115, 336
BstSFI CTRYAG 3 cut(s) 351, 465, 648
BstSLI GKGCMC 1 cut(s) 1150
BstSNI TACGTA 1 cut(s) 77
BstV1I GCAGC 5 cut(s) 115, 334, 337, 365, 1340
BstV2I GAAGAC 1 cut(s) 1263
BstX2I RGATCY 1 cut(s) 726
BstYI RGATCY 1 cut(s) 726
Bsu15I ATCGAT 1 cut(s) 558
BsuI GTATCC 1 cut(s) 598
BsuRI GGCC 2 cut(s) 115, 267
BsuTUI ATCGAT 1 cut(s) 558
BtsCI GGATG 3 cut(s) 10, 646, 1090
BtsI GCAGTG 2 cut(s) 951, 1154
BtsIMutI CAGTG 3 cut(s) 951, 1154, 1250
BveI ACCTGC 2 cut(s) 40, 1363
Cac8I GCNNGC 7 cut(s) 36, 40, 108, 163, 201, 631, 976
CaiI CAGNNNCTG 3 cut(s) 1061, 1156, 1252
CciI TCATGA 1 cut(s) 894
Cfr13I GGNCC 1 cut(s) 113
ClaI ATCGAT 1 cut(s) 558
Csp6I GTAC 1 cut(s) 1390
CviAII CATG 6 cut(s) 59, 418, 630, 895, 1046, 1108
CviQI GTAC 1 cut(s) 1390
DdeI CTNAG 6 cut(s) 138, 246, 315, 390, 855, 876
DpnI GATC 5 cut(s) 372, 575, 645, 728, 1065
DpnII GATC 5 cut(s) 370, 573, 643, 726, 1063
DraI TTTAAA 1 cut(s) 786
Eam1104I CTCTTC 4 cut(s) 440, 450, 702, 1338
EarI CTCTTC 4 cut(s) 440, 450, 702, 1338
Ecl136II GAGCTC 3 cut(s) 241, 415, 712
Eco105I TACGTA 1 cut(s) 77
Eco24I GRGCYC 4 cut(s) 243, 417, 714, 1144
Eco53kI GAGCTC 3 cut(s) 241, 415, 712
Eco57I CTGAAG 1 cut(s) 1340
Eco88I CYCGRG 1 cut(s) 713
Eco91I GGTNACC 2 cut(s) 1088, 1184
EcoICRI GAGCTC 3 cut(s) 241, 415, 712
EcoNI CCTNNNNNAGG 2 cut(s) 1244, 1370
EcoO65I GGTNACC 2 cut(s) 1088, 1184
EcoRII CCWGG 2 cut(s) 115, 336
EcoT22I ATGCAT 1 cut(s) 147
EcoT38I GRGCYC 4 cut(s) 243, 417, 714, 1144
Esp3I CGTCTC 1 cut(s) 386
FaeI CATG 6 cut(s) 62, 421, 633, 898, 1049, 1111
FaqI GGGAC 1 cut(s) 629
FatI CATG 6 cut(s) 58, 417, 629, 894, 1045, 1107
Fnu4HI GCNGC 5 cut(s) 104, 323, 351, 354, 1329
FokI GGATG 3 cut(s) 17, 653, 1097
FriOI GRGCYC 4 cut(s) 243, 417, 714, 1144
Fsp4HI GCNGC 5 cut(s) 104, 323, 351, 354, 1329
FspBI CTAG 5 cut(s) 200, 399, 1095, 1137, 1191
GluI GCNGC 5 cut(s) 104, 323, 351, 354, 1329
GsaI CCCAGC 1 cut(s) 114
HaeIII GGCC 2 cut(s) 115, 267
Hin1II CATG 6 cut(s) 62, 421, 633, 898, 1049, 1111
HinfI GANTC 6 cut(s) 26, 226, 258, 584, 1025, 1226
HphI GGTGA 7 cut(s) 733, 860, 1034, 1100, 1139, 1196, 1235
Hpy166II GTNNAC 3 cut(s) 889, 902, 1148
Hpy188I TCNGA 8 cut(s) 247, 802, 829, 1030, 1105, 1201, 1359, 1426
Hpy188III TCNNGA 6 cut(s) 213, 233, 715, 895, 1037, 1137
Hpy8I GTNNAC 3 cut(s) 889, 902, 1148
HpyAV CCTTC 1 cut(s) 544
HpyCH4IV ACGT 3 cut(s) 76, 222, 1271
HpyF10VI GCNNNNNNNGC 5 cut(s) 112, 296, 359, 395, 529
HpyF3I CTNAG 6 cut(s) 138, 246, 315, 390, 855, 876
HpySE526I ACGT 3 cut(s) 76, 222, 1271
Hsp92II CATG 6 cut(s) 62, 421, 633, 898, 1049, 1111
Kzo9I GATC 5 cut(s) 370, 573, 643, 726, 1063
LguI GCTCTTC 3 cut(s) 450, 702, 1338
LmnI GCTCC 5 cut(s) 169, 238, 412, 529, 994
Lsp1109I GCAGC 5 cut(s) 115, 334, 337, 365, 1340
LweI GCATC 4 cut(s) 132, 931, 961, 1048
MaeI CTAG 5 cut(s) 200, 399, 1095, 1137, 1191
MaeII ACGT 3 cut(s) 76, 222, 1271
MaeIII GTNAC 3 cut(s) 858, 1088, 1184
MalI GATC 5 cut(s) 372, 575, 645, 728, 1065
MboI GATC 5 cut(s) 370, 573, 643, 726, 1063
MfeI CAATTG 1 cut(s) 92
MflI RGATCY 1 cut(s) 726
MhlI GDGCHC 5 cut(s) 243, 417, 714, 1144, 1150
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 972
Mph1103I ATGCAT 1 cut(s) 147
MseI TTAA 7 cut(s) 14, 327, 492, 546, 785, 906, 1080
MslI CAYNNNNRTG 1 cut(s) 63
MspA1I CMGCKG 1 cut(s) 161
MspR9I CCNGG 2 cut(s) 117, 338
MunI CAATTG 1 cut(s) 92
Mva1269I GAATGC 3 cut(s) 42, 541, 1330
MvaI CCWGG 2 cut(s) 117, 338
MwoI GCNNNNNNNGC 5 cut(s) 112, 296, 359, 395, 529
NdeII GATC 5 cut(s) 370, 573, 643, 726, 1063
NheI GCTAGC 1 cut(s) 199
NlaIII CATG 6 cut(s) 62, 421, 633, 898, 1049, 1111
NlaIV GGNNCC 1 cut(s) 996
NmuCI GTSAC 2 cut(s) 1088, 1184
NsiI ATGCAT 1 cut(s) 147
NspI RCATGY 1 cut(s) 633
PaeI GCATGC 1 cut(s) 633
PaeR7I CTCGAG 1 cut(s) 713
PagI TCATGA 1 cut(s) 894
PaqCI CACCTGC 1 cut(s) 40
PciSI GCTCTTC 3 cut(s) 450, 702, 1338
PctI GAATGC 3 cut(s) 42, 541, 1330
PfeI GAWTC 5 cut(s) 226, 258, 584, 1025, 1226
PkrI GCNGC 5 cut(s) 105, 324, 352, 355, 1330
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Ppu21I YACGTR 1 cut(s) 77
Psp124BI GAGCTC 3 cut(s) 243, 417, 714
Psp1406I AACGTT 1 cut(s) 1271
Psp6I CCWGG 2 cut(s) 115, 336
PspEI GGTNACC 2 cut(s) 1088, 1184
PspFI CCCAGC 1 cut(s) 110
PspGI CCWGG 2 cut(s) 115, 336
PspN4I GGNNCC 1 cut(s) 996
PspPI GGNCC 1 cut(s) 113
PstI CTGCAG 3 cut(s) 355, 469, 652
PstNI CAGNNNCTG 3 cut(s) 1061, 1156, 1252
PsuI RGATCY 1 cut(s) 726
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 1 cut(s) 1391
RsaNI GTAC 1 cut(s) 1390
RseI CAYNNNNRTG 1 cut(s) 63
SacI GAGCTC 3 cut(s) 243, 417, 714
SapI GCTCTTC 3 cut(s) 450, 702, 1338
SaqAI TTAA 7 cut(s) 14, 327, 492, 546, 785, 906, 1080
SatI GCNGC 5 cut(s) 104, 323, 351, 354, 1329
Sau3AI GATC 5 cut(s) 370, 573, 643, 726, 1063
Sau96I GGNCC 1 cut(s) 113
ScaI AGTACT 1 cut(s) 1391
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 2 cut(s) 117, 338
SduI GDGCHC 5 cut(s) 243, 417, 714, 1144, 1150
SfaNI GCATC 4 cut(s) 132, 931, 961, 1048
SfcI CTRYAG 3 cut(s) 351, 465, 648
Sfr274I CTCGAG 1 cut(s) 713
SlaI CTCGAG 1 cut(s) 713
SmiMI CAYNNNNRTG 1 cut(s) 63
SmlI CTYRAG 2 cut(s) 211, 713
SmoI CTYRAG 2 cut(s) 211, 713
SnaBI TACGTA 1 cut(s) 77
SphI GCATGC 1 cut(s) 633
SspMI CTAG 5 cut(s) 200, 399, 1095, 1137, 1191
SstI GAGCTC 3 cut(s) 243, 417, 714
StyD4I CCNGG 2 cut(s) 115, 336
TaiI ACGT 3 cut(s) 79, 225, 1274
TaqI TCGA 3 cut(s) 87, 558, 714
TatI WGTACW 1 cut(s) 1389
TfiI GAWTC 5 cut(s) 226, 258, 584, 1025, 1226
Tru1I TTAA 7 cut(s) 14, 327, 492, 546, 785, 906, 1080
Tru9I TTAA 7 cut(s) 14, 327, 492, 546, 785, 906, 1080
TscAI CASTG 3 cut(s) 951, 1161, 1257
TseFI GTSAC 2 cut(s) 1088, 1184
TseI GCWGC 5 cut(s) 103, 322, 350, 353, 1328
Tsp45I GTSAC 2 cut(s) 1088, 1184
TspDTI ATGAA 4 cut(s) 21, 84, 687, 1062
TspGWI ACGGA 1 cut(s) 812
TspRI CASTG 3 cut(s) 951, 1161, 1257
VneI GTGCAC 1 cut(s) 1146
XagI CCTNNNNNAGG 2 cut(s) 1244, 1370
XapI RAATTY 3 cut(s) 304, 329, 500
XbaI TCTAGA 1 cut(s) 1136
XceI RCATGY 1 cut(s) 633
XhoI CTCGAG 1 cut(s) 713
XspI CTAG 5 cut(s) 200, 399, 1095, 1137, 1191
ZrmI AGTACT 1 cut(s) 1391
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.