Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006778

Physical Location & Seq

Genomic Coordinates Reverse (-)

19200885 .. 19204295

Gene Structure 3411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCGGCCAATTTCTGGACTTCGTCCCACTACAAACAGCTTTTGGAGCAGGAAGATGTTGATGTGGTGTCCCCGCTTGATAAAGAGAAGGGCATCACTCTTGAAGATTTCAAGCTTATAAAGATGCATATGGCTAACTATATATCAAGATTGGCACAACTTGTAAAAGTGAGACAAAGGGTTGTAGCTACCGCAGTTACATATATGAGACGTGTGTACACCAAGAAGAGTATGTCTGAGTATGATCCACGTCTTGTAGCTCCAACCTGCCTGTACCTGGCATCTAAAGCGGAAGAAAGCACAAGGCAAGCTAAACTTCTAGTATTTTATATAAAAAAGATGTATTTGGATGATAAGTATAGATATGAGGTCAAAGACATACTTGAAATGGAAATGAAGATTTTAGAAGCTCTCAACTATTATCTGGTTGTATACCATCCTTATCGTTCATTGTCTCAGTTGCTTCAAGATGCAGGCTTAAACGATATAAGTATGACTCAGTTAACTTGGGGAGTTGTAAATGACACTTACAAGATGGACCTTGCGCTTGTACATCCTCCACACCTGATTGCTTTAGCTTGCATATACATCGCTAGCGTACTTAGAGATAAAGATACCACAGCATGGTTTGAAGAGCTCCGTGTTGACATGAATGTGGTGAAAAACATATCAATGGAGTTATTAGATTTCTACGAAAACCACCGCATGATCCCGGAGGAAGGGTTTAATGCTGCACTCAACAAGCTAGCCTACAAACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

254

Amino Acids

29.6

Weight (kDa)

6.61

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	43 - 142	1.3e-18	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48630 AT5G48630 AT5G48640 AT5G48640 AT5G48640 AT5G48640 AT5G48640
fragaria_vesca	FvH4_2g18390 FvH4_2g18390 FvH4_2g18390
malus_domestica	MD10G1157700.v1.1 MD10G1158300.v1.1
prunus_persica	Prupe.8G196700_v2.0.a1
pyrus_communis	pycom05g15700 pycom10g13650
rosa_chinensis	RchiOBHm_Chr6g0283781
rosa_laevigata	RLG00000012796
rosa_multiflora	Rmu_sc0001521.1_g000016
rosa_roxburghii	Rroxscaffold_7G00185180
rosa_rugosa	Rorug06G0157800 Rorug06G0157900
rosa_samantha	Rh6AG270500 Rh6BG272100 Rh6DG265900
rosa_wichuraiana	Rw0G008310 Rw6G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	275
AccB7I	CCANNNNNTGG	2 cut(s)	15, 624
AccI	GTMKAC	1 cut(s)	432
AciI	CCGC	5 cut(s)	5, 74, 192, 290, 703
AclWI	GGATC	2 cut(s)	239, 703
AcoI	YGGCCR	1 cut(s)	6
AfaI	GTAC	4 cut(s)	218, 275, 552, 600
AfiI	CCNNNNNNNGG	4 cut(s)	15, 277, 624, 719
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	5 cut(s)	104, 112, 386, 467, 632
AjiI	CACGTC	2 cut(s)	212, 251
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	9 cut(s)	40, 115, 188, 260, 311, 410, 578, 637, 745
AluI	AGCT	9 cut(s)	40, 115, 188, 260, 311, 410, 578, 637, 745
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	3 cut(s)	166, 202, 459
AlwI	GGATC	2 cut(s)	239, 703
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	731
AspLEI	GCGC	1 cut(s)	547
AspS9I	GGNCC	1 cut(s)	538
AsuC2I	CCSGG	1 cut(s)	713
AsuHPI	GGTGA	1 cut(s)	670
AsuNHI	GCTAGC	2 cut(s)	593, 745
AvaII	GGWCC	1 cut(s)	538
BanII	GRGCYC	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	639
BbvI	GCAGC	1 cut(s)	718
BccI	CCATC	2 cut(s)	444, 529
BcgI	CGANNNNNNTGC	2 cut(s)	571, 605
BciT130I	CCWGG	1 cut(s)	278
BcnI	CCSGG	1 cut(s)	713
BcoDI	GTCTC	3 cut(s)	166, 202, 459
BfaI	CTAG	3 cut(s)	320, 594, 746
BfuAI	ACCTGC	1 cut(s)	275
BisI	GCNGC	2 cut(s)	6, 732
BlsI	GCNGC	2 cut(s)	7, 733
Bme1390I	CCNGG	2 cut(s)	278, 713
Bme18I	GGWCC	1 cut(s)	538
BmgBI	CACGTC	2 cut(s)	212, 251
BmgT120I	GGNCC	1 cut(s)	538
BmrFI	CCNGG	2 cut(s)	278, 713
BmsI	GCATC	4 cut(s)	102, 114, 290, 460
BmtI	GCTAGC	2 cut(s)	597, 749
BpuMI	CCSGG	1 cut(s)	713
BsaXI	ACNNNNNCTCC	2 cut(s)	707, 737
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 277, 624, 719
BseBI	CCWGG	1 cut(s)	278
BseGI	GGATG	3 cut(s)	355, 436, 553
BseLI	CCNNNNNNNGG	4 cut(s)	15, 277, 624, 719
BseMII	CTCAG	3 cut(s)	228, 470, 512
BseXI	GCAGC	1 cut(s)	718
BsgI	GTGCAG	1 cut(s)	717
BshFI	GGCC	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	639
BsiSI	CCGG	1 cut(s)	713
BslFI	GGGAC	2 cut(s)	10, 55
BslI	CCNNNNNNNGG	4 cut(s)	15, 277, 624, 719
BsmAI	GTCTC	3 cut(s)	166, 202, 459
BsmBI	CGTCTC	1 cut(s)	202
BsmFI	GGGAC	2 cut(s)	10, 55
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp1407I	TGTACA	2 cut(s)	216, 550
Bsp143I	GATC	2 cut(s)	244, 708
BspACI	CCGC	5 cut(s)	5, 74, 192, 290, 703
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	3 cut(s)	229, 469, 511
BspMI	ACCTGC	1 cut(s)	275
BspOI	GCTAGC	2 cut(s)	597, 749
BspPI	GGATC	2 cut(s)	239, 703
BspQI	GCTCTTC	1 cut(s)	627
BsrGI	TGTACA	2 cut(s)	216, 550
BssMI	GATC	2 cut(s)	244, 708
BssNAI	GTATAC	1 cut(s)	433
Bst1107I	GTATAC	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	278
Bst6I	CTCTTC	2 cut(s)	221, 627
BstAUI	TGTACA	2 cut(s)	216, 550
BstC8I	GCNNGC	5 cut(s)	309, 475, 580, 595, 747
BstDEI	CTNAG	4 cut(s)	237, 456, 498, 602
BstF5I	GGATG	3 cut(s)	355, 436, 553
BstHHI	GCGC	1 cut(s)	547
BstKTI	GATC	2 cut(s)	247, 711
BstMAI	GTCTC	3 cut(s)	166, 202, 459
BstMBI	GATC	2 cut(s)	244, 708
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 287
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	2 cut(s)	276, 711
BstV1I	GCAGC	1 cut(s)	718
BstZ17I	GTATAC	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	8
BtgZI	GCGATG	1 cut(s)	574
BtrI	CACGTC	2 cut(s)	212, 251
BtsCI	GGATG	3 cut(s)	355, 436, 553
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	5 cut(s)	309, 475, 580, 595, 747
CfoI	GCGC	1 cut(s)	547
Cfr13I	GGNCC	1 cut(s)	538
Csp6I	GTAC	4 cut(s)	217, 274, 551, 599
CviAII	CATG	3 cut(s)	624, 649, 706
CviQI	GTAC	4 cut(s)	217, 274, 551, 599
DdeI	CTNAG	4 cut(s)	237, 456, 498, 602
DpnI	GATC	2 cut(s)	246, 710
DpnII	GATC	2 cut(s)	244, 708
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	221, 627
EarI	CTCTTC	2 cut(s)	221, 627
Ecl136II	GAGCTC	1 cut(s)	637
Eco24I	GRGCYC	1 cut(s)	639
Eco47I	GGWCC	1 cut(s)	538
Eco53kI	GAGCTC	1 cut(s)	637
EcoICRI	GAGCTC	1 cut(s)	637
EcoRII	CCWGG	1 cut(s)	276
EcoT22I	ATGCAT	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	639
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	3 cut(s)	627, 652, 709
FalI	AAGNNNNNCTT	4 cut(s)	300, 332, 366, 398
FaqI	GGGAC	2 cut(s)	10, 55
FatI	CATG	3 cut(s)	623, 648, 705
FauI	CCCGC	1 cut(s)	81
FauNDI	CATATG	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	6, 732
FokI	GGATG	3 cut(s)	362, 423, 540
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	2 cut(s)	6, 732
FspBI	CTAG	3 cut(s)	320, 594, 746
GlaI	GCGC	1 cut(s)	546
GluI	GCNGC	2 cut(s)	6, 732
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	713
HhaI	GCGC	1 cut(s)	547
Hin1II	CATG	3 cut(s)	627, 652, 709
Hin6I	GCGC	1 cut(s)	545
HinP1I	GCGC	1 cut(s)	545
HincII	GTYRAC	2 cut(s)	504, 646
HindII	GTYRAC	2 cut(s)	504, 646
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	1 cut(s)	496
HpaI	GTTAAC	1 cut(s)	504
HpaII	CCGG	1 cut(s)	713
HphI	GGTGA	1 cut(s)	670
Hpy166II	GTNNAC	5 cut(s)	217, 219, 433, 504, 646
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	4 cut(s)	16, 101, 147, 467
Hpy8I	GTNNAC	5 cut(s)	217, 219, 433, 504, 646
HpyAV	CCTTC	2 cut(s)	82, 713
HpyCH4IV	ACGT	2 cut(s)	211, 250
HpyCH4V	TGCA	4 cut(s)	127, 473, 582, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 287
HpyF3I	CTNAG	4 cut(s)	237, 456, 498, 602
HpySE526I	ACGT	2 cut(s)	211, 250
Hsp92II	CATG	3 cut(s)	627, 652, 709
HspAI	GCGC	1 cut(s)	545
KspAI	GTTAAC	1 cut(s)	504
Kzo9I	GATC	2 cut(s)	244, 708
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	3 cut(s)	46, 265, 642
LpnPI	CCDG	9 cut(s)	35, 263, 280, 284, 290, 410, 459, 578, 726
Lsp1109I	GCAGC	1 cut(s)	718
LweI	GCATC	4 cut(s)	102, 114, 290, 460
MaeI	CTAG	3 cut(s)	320, 594, 746
MaeII	ACGT	2 cut(s)	211, 250
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	246, 710
MboI	GATC	2 cut(s)	244, 708
MboII	GAAGA	6 cut(s)	65, 116, 238, 305, 409, 644
MhlI	GDGCHC	1 cut(s)	639
MluCI	AATT	1 cut(s)	10
MlyI	GAGTC	1 cut(s)	490
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	3 cut(s)	361, 567, 709
Mph1103I	ATGCAT	1 cut(s)	129
MseI	TTAA	3 cut(s)	479, 503, 726
MslI	CAYNNNNRTG	2 cut(s)	653, 671
MspI	CCGG	1 cut(s)	713
MspR9I	CCNGG	2 cut(s)	278, 713
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	46, 287
NciI	CCSGG	1 cut(s)	713
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	2 cut(s)	244, 708
NheI	GCTAGC	2 cut(s)	593, 745
NlaIII	CATG	3 cut(s)	627, 652, 709
NsiI	ATGCAT	1 cut(s)	129
PciSI	GCTCTTC	1 cut(s)	627
PflFI	GACNNNGTC	1 cut(s)	22
PflMI	CCANNNNNTGG	2 cut(s)	15, 624
PfoI	TCCNGGA	1 cut(s)	711
PkrI	GCNGC	2 cut(s)	7, 733
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PsiI	TTATAA	1 cut(s)	119
Psp124BI	GAGCTC	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	538
PsyI	GACNNNGTC	1 cut(s)	22
RsaI	GTAC	4 cut(s)	218, 275, 552, 600
RsaNI	GTAC	4 cut(s)	217, 274, 551, 599
RseI	CAYNNNNRTG	2 cut(s)	653, 671
SacI	GAGCTC	1 cut(s)	639
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	3 cut(s)	479, 503, 726
SatI	GCNGC	2 cut(s)	6, 732
Sau3AI	GATC	2 cut(s)	244, 708
Sau96I	GGNCC	1 cut(s)	538
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	2 cut(s)	278, 713
SduI	GDGCHC	1 cut(s)	639
SfaNI	GCATC	4 cut(s)	102, 114, 290, 460
SinI	GGWCC	1 cut(s)	538
SmiMI	CAYNNNNRTG	2 cut(s)	653, 671
Sse9I	AATT	1 cut(s)	10
SsiI	CCGC	5 cut(s)	5, 74, 192, 290, 703
SspMI	CTAG	3 cut(s)	320, 594, 746
SstI	GAGCTC	1 cut(s)	639
StyD4I	CCNGG	2 cut(s)	276, 711
TaiI	ACGT	2 cut(s)	214, 253
TasI	AATT	1 cut(s)	10
TatI	WGTACW	2 cut(s)	216, 550
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	3 cut(s)	479, 503, 726
Tru9I	TTAA	3 cut(s)	479, 503, 726
TseI	GCWGC	1 cut(s)	731
TspDTI	ATGAA	3 cut(s)	410, 438, 665
TspGWI	ACGGA	1 cut(s)	629
Tth111I	GACNNNGTC	1 cut(s)	22
Van91I	CCANNNNNTGG	2 cut(s)	15, 624
VpaK11BI	GGWCC	1 cut(s)	538
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	3 cut(s)	320, 594, 746
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.