Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011523

Physical Location & Seq

Genomic Coordinates Forward (+)

20993364 .. 20993917

Gene Structure 554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAAGTTCCTGATAGGAGTGGCGCATCAAACGATAGTGACATTCATGATATTCTTCCCGTGGATCTTTTGCAATAGAGAGAAGGAGAAAAAGGTAATAGAGGAGCGAGATCTGGTCATCTCCCAAGCAAAAAGGCGGCAACAGATGATTTCCAGCCTGCCAAAGCTCTTCAACTTGATTTATTTCGTACTTCAATCTACGAACCGTTCTGTTATCACAAAAGAAGAGCTTGTGCACAAGATCATTTGGACCAATTTCAATATTGTTGACAGAAGTAAGTCGTTAAACAAAAGAAGATACTATTTCTACGAAAAGTTATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0031570 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0046483 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051276 GO:0051726 GO:0065007 GO:0070182 GO:0071704 GO:0071840 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDT1 CDT1_C

Protein Analysis

108

Amino Acids

13.12

Weight (kDa)

10.06

Isoelectric Point (pI)

63.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDT1_C	PF16679	26 - 91	1.4e-09	DNA replication factor Cdt1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21760 FvH4_5g18520 FvH4_5g18520
malus_domestica	MD10G1150800.v1.1 MD14G1246400.v1.1
prunus_persica	Prupe.5G244700_v2.0.a1 Prupe.5G244700_v2.0.a1 Prupe.5G244700_v2.0.a1 Prupe.8G198500_v2.0.a1
pyrus_communis	pycom05g17860
rosa_chinensis	RchiOBHm_Chr7g0176981
rosa_laevigata	RLG00000005566
rosa_multiflora	Rmu_sc0005310.1_g000033
rosa_roxburghii	Rroxscaffold_3G00276190
rosa_rugosa	Rorug06G0402800
rosa_samantha	Rh7AG002100 Rh7BG002500 Rh7CG001800 Rh7DG002400
rosa_wichuraiana	Rw7G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	136
AclWI	GGATC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	189
AgsI	TTSAA	3 cut(s)	172, 194, 259
AluBI	AGCT	2 cut(s)	166, 229
AluI	AGCT	2 cut(s)	166, 229
Alw21I	GWGCWC	1 cut(s)	237
Alw44I	GTGCAC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	71
ApaLI	GTGCAC	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	237
BglII	AGATCT	1 cut(s)	109
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	249
BmsI	GCATC	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	116
BseSI	GKGCMC	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	3 cut(s)	63, 109, 240
BspACI	CCGC	1 cut(s)	136
BspHI	TCATGA	1 cut(s)	45
BspPI	GGATC	1 cut(s)	71
BspQI	GCTCTTC	2 cut(s)	173, 219
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	3 cut(s)	63, 109, 240
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	2 cut(s)	173, 219
BstC8I	GCNNGC	1 cut(s)	158
BstDSI	CCRYGG	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	3 cut(s)	66, 112, 243
BstMBI	GATC	3 cut(s)	63, 109, 240
BstSLI	GKGCMC	1 cut(s)	237
BstX2I	RGATCY	2 cut(s)	63, 109
BstYI	RGATCY	2 cut(s)	63, 109
BtgI	CCRYGG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	158
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	3 cut(s)	156, 166, 229
CviKI_1	RGCY	3 cut(s)	156, 166, 229
CviQI	GTAC	1 cut(s)	188
DpnI	GATC	3 cut(s)	65, 111, 242
DpnII	GATC	3 cut(s)	63, 109, 240
Eam1104I	CTCTTC	2 cut(s)	173, 219
EarI	CTCTTC	2 cut(s)	173, 219
Eco47I	GGWCC	1 cut(s)	249
FaeI	CATG	1 cut(s)	49
FaiI	YATR	2 cut(s)	47, 319
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FatI	CATG	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	137
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
Hpy166II	GTNNAC	2 cut(s)	235, 268
Hpy188III	TCNNGA	2 cut(s)	10, 46
Hpy8I	GTNNAC	2 cut(s)	235, 268
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	2 cut(s)	72, 235
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	3 cut(s)	63, 109, 240
LguI	GCTCTTC	2 cut(s)	173, 219
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	4 cut(s)	23, 98, 166, 170
LweI	GCATC	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	3 cut(s)	65, 111, 242
MboI	GATC	3 cut(s)	63, 109, 240
MboII	GAAGA	4 cut(s)	46, 160, 236, 306
MflI	RGATCY	2 cut(s)	63, 109
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	1 cut(s)	253
MnlI	CCTC	1 cut(s)	94
MseI	TTAA	1 cut(s)	284
NdeII	GATC	3 cut(s)	63, 109, 240
NlaIII	CATG	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	37
PagI	TCATGA	1 cut(s)	45
PciSI	GCTCTTC	2 cut(s)	173, 219
PkrI	GCNGC	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	249
PsuI	RGATCY	2 cut(s)	63, 109
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SapI	GCTCTTC	2 cut(s)	173, 219
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	3 cut(s)	63, 109, 240
Sau96I	GGNCC	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	3 cut(s)	96, 168, 231
SfaNI	GCATC	1 cut(s)	34
SinI	GGWCC	1 cut(s)	249
Sse9I	AATT	1 cut(s)	253
SsiI	CCGC	1 cut(s)	136
SspI	AATATT	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	206
TasI	AATT	1 cut(s)	253
TauI	GCSGC	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TseFI	GTSAC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	17, 34
VneI	GTGCAC	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.