Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006720

Physical Location & Seq

Genomic Coordinates Forward (+)

24618504 .. 24620237

Gene Structure 1734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGATGGGTTATGCAAGGAGAATAGAATTGACGAGGCGGTCTTTTTGTTGGATGAGATGCAAATTGAGGGGTGCTTGCCGAGTCCTATGACGTTTAATGTGTTAATTAACGCATTGTGCAAGAAGGGTGACTTGGCCCGTGCAGCGAAACTTGTTGATAACATGTTTCTCAAAGGCAGTATTCCAAATGAAGTCACTTATAACACCCTTATTCATGGTTTATGTCTCAAGGGTAAGTTAGACAAAGCAGTTAGTCTTTTGGATCGAATCATTTCAAATAAATGTGTGCCTAATGATGTGACATACGGAACACTCATCAATGGACTTGTTAAGCAAGGACGAGCAGTTGATGGGGCTCGAGTGTTGATCTCTATGGAGGAAAGAGGGCGTCATGCAAATGAGTATATATATTCAGTCCTTGTTAGTGGACTGTTCAAGGAGGGAAAATTTGATGATGCGATGACATTGTGGAAGGAGATGATGGAGAAGGGATGTAAACCCAACACCGTTGTCTATAGTGCTCTCATAGATGGCCTTTGTCGAGAAGGAAAACCAGATGAAGCCAAGGAAGTATTCTGTGAGATGATGAGGAATGGTTGCTTGCCCAATTCCTTCACTTATAGCTCCTTAATGAGGGGGTTCTTTCAGACGGGTCAGAGTAAAAAAGCCATTCTTTTGTGGAATGAAATGGAAAACAAGAATTTTATGCGTAATGAGGTCTGTTACAGTGTCCTAATTCATGGGTTATGCAAGGATGGGCAACTCAAAGAGGCCCTGATGGCGTGGCAGAAGATGTTGGGAAGTGGGCATAAACCTGATGTTGTGGCTTATAGTTCGATGATTCATGGCCTTTGCAATGATGGTTTGGTTGAGCAGGGTTTGAAACTTTTCAATGAAATGCTTTCTCAGGAGCCTGAATGTCAACCAGATGTTATCACTTATAACATACTTTTCGATGCCATCTGCAAGCAGAGTAATATCGTCCTTGCCATTGATATTTTAAATAGAATGATGGATAGGGGTTGCGATCCCGATTTGGTTACGTGTGACATCTTCCTGAGAACTTTGAGAGAAAAACTCAACCCGCCTCAAGATGGAAGGGAGTTCCTAAATGAGCTTGTGGTCCGGCTGTTAAAGCAGCAGAGGATAGTAGGTGCTTCCCAGATTGTAGAAGTCATGCTGAAAAAATATTTGCCACCCAAAGCCTCTGTTTGGACAAAAGTTGTGCAAGAACTTTTCAAACCTAAGAAGTTTCTGTCCATTGTTTTGGAGGTGGAAACCATCTATATGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

432

Amino Acids

48.7

Weight (kDa)

6.93

Isoelectric Point (pI)

26.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	1 - 41	6.7e-11	PPR repeat family
PPR_long	PF17177	8 - 115	1e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	16 - 71	1.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	24 - 55	1.2e-09	PPR repeat
PPR_2	PF13041	27 - 75	1.4e-14	PPR repeat family
PPR_3	PF13812	50 - 109	2.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	58 - 89	7.3e-13	PPR repeat
PPR_2	PF13041	62 - 111	5.6e-16	PPR repeat family
PPR	PF01535	65 - 95	1.1e-07	PPR repeat
PPR_2	PF13041	100 - 146	5.7e-07	PPR repeat family
PPR_long	PF17177	116 - 222	2.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	121 - 177	4.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	129 - 160	3.3e-06	PPR repeat
PPR_2	PF13041	133 - 181	7.4e-15	PPR repeat family
PPR	PF01535	136 - 165	3.7e-07	PPR repeat
PPR_1	PF12854	163 - 195	4e-14	PPR repeat
PPR_2	PF13041	167 - 215	2.8e-18	PPR repeat family
PPR_3	PF13812	168 - 212	4.4e-06	Pentatricopeptide repeat domain
PPR	PF01535	170 - 200	1.2e-10	PPR repeat
PPR_1	PF12854	198 - 231	9.1e-07	PPR repeat
PPR_2	PF13041	209 - 251	1.1e-10	PPR repeat family
PPR_1	PF12854	234 - 265	1.2e-07	PPR repeat
PPR_2	PF13041	238 - 286	3.6e-15	PPR repeat family
PPR	PF01535	240 - 269	1.6e-06	PPR repeat
PPR_1	PF12854	269 - 300	4.3e-11	PPR repeat
PPR_2	PF13041	272 - 323	4.6e-16	PPR repeat family
PPR	PF01535	275 - 302	6.8e-07	PPR repeat
PPR_1	PF12854	307 - 337	7.5e-06	PPR repeat
PPR_2	PF13041	309 - 356	8e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20090 AT4G20090
fragaria_vesca	FvH4_3g13070 FvH4_3g13070 FvH4_3g13070 FvH4_3g13070
malus_domestica	MD10G1226600.v1.1
prunus_persica	Prupe.4G118800_v2.0.a1
pyrus_communis	pycom05g22130 pycom05g22140 pycom10g19050
rosa_chinensis	RchiOBHm_Chr5g0021261
rosa_laevigata	RLG00000032600
rosa_multiflora	Rmu_sc0003392.1_g000013 Rmu_sc0004847.1_g000003
rosa_roxburghii	Rroxscaffold_1G00057240
rosa_rugosa	Rorug05G0065600 Rorug05G0065700 Rorug05G0065800 Rorug05G0065900 Rorug05G0065900
rosa_samantha	Rh5AG154600 Rh5BG154400 Rh5CG168000 Rh5DG154700
rosa_wichuraiana	Rw5G013780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	201, 942
AasI	GACNNNNNNGTC	1 cut(s)	38
AciI	CCGC	2 cut(s)	38, 1085
AclWI	GGATC	2 cut(s)	270, 1022
AcsI	RAATTY	2 cut(s)	446, 700
AcyI	GRCGYC	1 cut(s)	388
AfiI	CCNNNNNNNGG	3 cut(s)	633, 1094, 1212
AflIII	ACRYGT	2 cut(s)	162, 1043
AgsI	TTSAA	5 cut(s)	276, 436, 883, 892, 1240
AjuI	GAANNNNNNNTTGG	4 cut(s)	116, 148, 557, 589
AluBI	AGCT	2 cut(s)	624, 1117
AluI	AGCT	2 cut(s)	624, 1117
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	2 cut(s)	270, 1022
Ama87I	CYCGRG	1 cut(s)	357
AoxI	GGCC	4 cut(s)	135, 532, 771, 847
ApeKI	GCWGC	2 cut(s)	143, 1138
ApoI	RAATTY	2 cut(s)	446, 700
Asp700I	GAANNNNTTC	2 cut(s)	271, 887
AspS9I	GGNCC	3 cut(s)	136, 772, 1123
AsuHPI	GGTGA	1 cut(s)	140
AvaI	CYCGRG	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	1123
BanII	GRGCYC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	2 cut(s)	155, 1150
BcoDI	GTCTC	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	514
BglI	GCCNNNNNGGC	1 cut(s)	779
BisI	GCNGC	2 cut(s)	144, 1139
BlsI	GCNGC	2 cut(s)	145, 1140
Bme18I	GGWCC	1 cut(s)	1123
BmeT110I	CYCGRG	1 cut(s)	357
BmgT120I	GGNCC	3 cut(s)	136, 772, 1123
BmiI	GGNNCC	1 cut(s)	912
BmsI	GCATC	3 cut(s)	48, 445, 946
BplI	GAGNNNNNCTC	2 cut(s)	1062, 1094
BpuEI	CTTGAG	2 cut(s)	212, 1074
BsaAI	YACGTR	1 cut(s)	1044
BsaHI	GRCGYC	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	564
Bsc4I	CCNNNNNNNGG	3 cut(s)	633, 1094, 1212
Bse3DI	GCAATG	1 cut(s)	862
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	4 cut(s)	10, 58, 497, 760
BseLI	CCNNNNNNNGG	3 cut(s)	633, 1094, 1212
BseMI	GCAATG	1 cut(s)	862
BseMII	CTCAG	2 cut(s)	920, 1049
BseXI	GCAGC	2 cut(s)	155, 1150
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	4 cut(s)	137, 534, 773, 849
BsiHKAI	GWGCWC	1 cut(s)	523
BsiHKCI	CYCGRG	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	1126
BslI	CCNNNNNNNGG	3 cut(s)	633, 1094, 1212
BsmAI	GTCTC	1 cut(s)	230
BsnI	GGCC	4 cut(s)	137, 534, 773, 849
BsoBI	CYCGRG	1 cut(s)	357
Bsp1286I	GDGCHC	2 cut(s)	358, 523
Bsp143I	GATC	3 cut(s)	262, 366, 1027
BspACI	CCGC	2 cut(s)	38, 1085
BspANI	GGCC	4 cut(s)	137, 534, 773, 849
BspCNI	CTCAG	2 cut(s)	919, 1050
BspLI	GGNNCC	1 cut(s)	912
BspPI	GGATC	2 cut(s)	270, 1022
BsrDI	GCAATG	1 cut(s)	862
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	3 cut(s)	262, 366, 1027
BssNI	GRCGYC	1 cut(s)	388
BssT1I	CCWWGG	1 cut(s)	564
Bst4CI	ACNGT	3 cut(s)	432, 508, 728
BstACI	GRCGYC	1 cut(s)	388
BstBAI	YACGTR	1 cut(s)	1044
BstC8I	GCNNGC	3 cut(s)	77, 602, 968
BstDEI	CTNAG	3 cut(s)	906, 1058, 1245
BstENI	CCTNNNNNAGG	1 cut(s)	631
BstF5I	GGATG	4 cut(s)	10, 58, 497, 760
BstKTI	GATC	3 cut(s)	265, 369, 1030
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	3 cut(s)	262, 366, 1027
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 779, 1135
BstNSI	RCATGY	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	514
BstV1I	GCAGC	2 cut(s)	155, 1150
BstXI	CCANNNNNNTGG	1 cut(s)	1267
BsuRI	GGCC	4 cut(s)	137, 534, 773, 849
BtgZI	GCGATG	1 cut(s)	473
BtsCI	GGATG	4 cut(s)	10, 58, 497, 760
BtsIMutI	CAGTG	1 cut(s)	733
Cac8I	GCNNGC	3 cut(s)	77, 602, 968
Cfr13I	GGNCC	3 cut(s)	136, 772, 1123
CseI	GACGC	1 cut(s)	377
CviAII	CATG	6 cut(s)	163, 215, 392, 740, 845, 1177
DdeI	CTNAG	3 cut(s)	906, 1058, 1245
DpnI	GATC	3 cut(s)	264, 368, 1029
DpnII	GATC	3 cut(s)	262, 366, 1027
DraI	TTTAAA	1 cut(s)	1002
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	564
Eco24I	GRGCYC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	1123
Eco88I	CYCGRG	1 cut(s)	357
EcoNI	CCTNNNNNAGG	1 cut(s)	631
EcoO109I	RGGNCCY	1 cut(s)	772
EcoT14I	CCWWGG	1 cut(s)	564
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	6 cut(s)	166, 218, 395, 743, 848, 1180
FalI	AAGNNNNNCTT	4 cut(s)	116, 148, 657, 689
FatI	CATG	6 cut(s)	162, 214, 391, 739, 844, 1176
FauI	CCCGC	1 cut(s)	1092
Fnu4HI	GCNGC	2 cut(s)	144, 1139
FokI	GGATG	4 cut(s)	17, 65, 504, 767
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	2 cut(s)	144, 1139
GluI	GCNGC	2 cut(s)	144, 1139
HaeIII	GGCC	4 cut(s)	137, 534, 773, 849
HapII	CCGG	1 cut(s)	1126
HgaI	GACGC	1 cut(s)	377
Hin1I	GRCGYC	1 cut(s)	388
Hin1II	CATG	6 cut(s)	166, 218, 395, 743, 848, 1180
HincII	GTYRAC	1 cut(s)	923
HindII	GTYRAC	1 cut(s)	923
HinfI	GANTC	3 cut(s)	82, 267, 841
HpaII	CCGG	1 cut(s)	1126
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	3 cut(s)	428, 497, 923
Hpy188I	TCNGA	2 cut(s)	648, 657
Hpy188III	TCNNGA	5 cut(s)	542, 908, 1031, 1057, 1091
Hpy8I	GTNNAC	3 cut(s)	428, 497, 923
HpyAV	CCTTC	6 cut(s)	118, 466, 481, 539, 622, 1092
HpyCH4III	ACNGT	3 cut(s)	432, 508, 728
HpyCH4IV	ACGT	2 cut(s)	92, 1043
HpyCH4V	TGCA	9 cut(s)	15, 61, 120, 143, 395, 750, 855, 966, 1228
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 779, 1135
HpyF3I	CTNAG	3 cut(s)	906, 1058, 1245
HpySE526I	ACGT	2 cut(s)	92, 1043
Hsp92I	GRCGYC	1 cut(s)	388
Hsp92II	CATG	6 cut(s)	166, 218, 395, 743, 848, 1180
Kzo9I	GATC	3 cut(s)	262, 366, 1027
LmnI	GCTCC	2 cut(s)	629, 910
Lsp1109I	GCAGC	2 cut(s)	155, 1150
LweI	GCATC	3 cut(s)	48, 445, 946
MaeII	ACGT	2 cut(s)	92, 1043
MaeIII	GTNAC	6 cut(s)	128, 193, 298, 722, 1039, 1046
MalI	GATC	3 cut(s)	264, 368, 1029
MboI	GATC	3 cut(s)	262, 366, 1027
MboII	GAAGA	2 cut(s)	802, 1045
MhlI	GDGCHC	2 cut(s)	358, 523
MluCI	AATT	7 cut(s)	27, 63, 105, 446, 607, 700, 735
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	30
MroXI	GAANNNNTTC	2 cut(s)	271, 887
MseI	TTAA	7 cut(s)	96, 104, 108, 330, 629, 1001, 1133
MslI	CAYNNNNRTG	2 cut(s)	396, 1286
MspI	CCGG	1 cut(s)	1126
MwoI	GCNNNNNNNGC	3 cut(s)	143, 779, 1135
NdeII	GATC	3 cut(s)	262, 366, 1027
NlaIII	CATG	6 cut(s)	166, 218, 395, 743, 848, 1180
NlaIV	GGNNCC	1 cut(s)	912
NmeAIII	GCCGAG	1 cut(s)	105
NmuCI	GTSAC	4 cut(s)	128, 193, 298, 1046
NspI	RCATGY	1 cut(s)	166
PacI	TTAATTAA	1 cut(s)	108
PaeR7I	CTCGAG	1 cut(s)	357
PciI	ACATGT	1 cut(s)	162
PdmI	GAANNNNTTC	2 cut(s)	271, 887
PfeI	GAWTC	2 cut(s)	267, 841
PkrI	GCNGC	2 cut(s)	145, 1140
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
Ppu21I	YACGTR	1 cut(s)	1044
PscI	ACATGT	1 cut(s)	162
PsiI	TTATAA	2 cut(s)	201, 942
PspN4I	GGNNCC	1 cut(s)	912
PspPI	GGNCC	3 cut(s)	136, 772, 1123
PspXI	VCTCGAGB	1 cut(s)	357
RseI	CAYNNNNRTG	2 cut(s)	396, 1286
SaqAI	TTAA	7 cut(s)	96, 104, 108, 330, 629, 1001, 1133
SatI	GCNGC	2 cut(s)	144, 1139
Sau3AI	GATC	3 cut(s)	262, 366, 1027
Sau96I	GGNCC	3 cut(s)	136, 772, 1123
SchI	GAGTC	1 cut(s)	91
SduI	GDGCHC	2 cut(s)	358, 523
SetI	ASST	9 cut(s)	95, 626, 720, 817, 1046, 1119, 1156, 1246, 1275
SfaNI	GCATC	3 cut(s)	48, 445, 946
SfcI	CTRYAG	1 cut(s)	514
Sfr274I	CTCGAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	1123
SlaI	CTCGAG	1 cut(s)	357
SmiMI	CAYNNNNRTG	2 cut(s)	396, 1286
SmlI	CTYRAG	3 cut(s)	227, 357, 1089
SmoI	CTYRAG	3 cut(s)	227, 357, 1089
Sse9I	AATT	7 cut(s)	27, 63, 105, 446, 607, 700, 735
SsiI	CCGC	2 cut(s)	38, 1085
SspI	AATATT	1 cut(s)	1190
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	3 cut(s)	432, 508, 728
TaiI	ACGT	2 cut(s)	95, 1046
TaqI	TCGA	5 cut(s)	265, 358, 541, 836, 954
TasI	AATT	7 cut(s)	27, 63, 105, 446, 607, 700, 735
TfiI	GAWTC	2 cut(s)	267, 841
Tru1I	TTAA	7 cut(s)	96, 104, 108, 330, 629, 1001, 1133
Tru9I	TTAA	7 cut(s)	96, 104, 108, 330, 629, 1001, 1133
TscAI	CASTG	1 cut(s)	733
TseFI	GTSAC	4 cut(s)	128, 193, 298, 1046
TseI	GCWGC	2 cut(s)	143, 1138
Tsp45I	GTSAC	4 cut(s)	128, 193, 298, 1046
TspDTI	ATGAA	7 cut(s)	203, 204, 573, 699, 728, 833, 909
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	733
VpaK11BI	GGWCC	1 cut(s)	1123
XagI	CCTNNNNNAGG	1 cut(s)	631
XapI	RAATTY	2 cut(s)	446, 700
XceI	RCATGY	1 cut(s)	166
XhoI	CTCGAG	1 cut(s)	357
XmnI	GAANNNNTTC	2 cut(s)	271, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.