Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003112

Physical Location & Seq

Genomic Coordinates Reverse (-)

26287462 .. 26290995

Gene Structure 3534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGCTGAAACAATCCCCATCTTTCAATACCACAAGCTCGTTCTCCATTCATGAAGCAGGGGTAACTCATGTCCTAGTAACTGGAGGTGCTGGATTTATTGGTTCACATGCTGCATTACGACTCCTAAGGGATCAATATCGTGTAACTATTGTGGATAACCTCTCACGGGGGAACATAGGTGCCATCAAGGTTCTCCAAGAGTTATTTCCTGAACCTGGGAGGCTTCAGTTTATTTATGCTGACTTGGGAGATCCAAAATCTGTCAACAAAATATTTTCGGAGAATGCATTTGATGCTGTGATGCATTTTGCAGCTGTTGCATATGTTGGGGAAAGCACACTTGATCCACTTAAGTATTACCACAACATTACATCAAATACCTTAGGGGTATTGGAGGCAATGGCTTCACATGGTGTGAAGACTTTGATATATTCTAGTACATGTGCAACATACGGAGAACCTGAGAAGATGCCTATTACTGAAGAAACTCCGCAGCTCCCAATTAATCCATATGGAAAAGCAAAGAAGATGGCAGAAGATATCATCTTGGATTTTCATAAGAATTCAGACATGGCAGTCATGATCCTGAGATACTTCAATGTGATTGGGTCAGACCCAGAGGGCAGATTAGGTGAAGCTCCCAGACCTGAACTTCGTGAACATGGACGAATATCAGGTGCTTGTTTTGATGCAGCTCGTGGTATCACTCCTGGGCTAAAGGTTCGAGGTACCGATTACAAAACATCTGATGGCACTTGCATAAGAGATTATATAAATGTGACCGATCTGGTTGATGCCCACGTTAAAGCTCTTGAGCATGCACAGCCCCGTAAAGTGGGAATCTACAATGTTGGAACTGGAAAAGGTAGTTCAGTAAAGGAGTTCGTGGAGGCATGTAAGAAGGCAACTGGTGTGGACATTAAGGTTGATTTCCTTCCCCGCCGGCCTGGTGACTATGCTGAAGTCTTCAGTGACCCATCTAAGATCCTCCGTGAACTGAACTGGAGCGCTCAACACACCAACCTTCAAGAGAGTTTGCAGGTTGCGTGGAGATGGCAAAAAGCGCATCGCGATGGGTACGGAACCACCCCGTTGGTGATGTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009856 GO:0009987 GO:0010154 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019322 GO:0019566 GO:0019567 GO:0022414 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044238 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046364 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050373 GO:0051704 GO:0061458 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

370

Amino Acids

40.61

Weight (kDa)

6.87

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	23 - 203	1e-11	RmlD substrate binding domain
Epimerase	PF01370	24 - 285	3.3e-52	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	24 - 204	1.6e-12	Polysaccharide biosynthesis protein
GDP_Man_Dehyd	PF16363	25 - 339	3.1e-54	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	25 - 186	6.1e-15	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4	PF07993	26 - 208	5.1e-07	Male sterility protein
NAD_binding_10	PF13460	28 - 201	3.8e-08	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20460 AT5G44480 AT5G44480 AT5G44480 AT5G44480
fragaria_vesca	FvH4_3g11380 FvH4_3g11380 FvH4_3g11380 FvH4_3g11380 FvH4_3g11380 FvH4_3g11380
malus_domestica	MD05G1263800.v1.1 MD10G1241500.v1.1
prunus_persica	Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1 Prupe.4G101700_v2.0.a1
pyrus_communis	pycom05g24780 pycom10g20250
rosa_chinensis	RchiOBHm_Chr5g0018331
rosa_laevigata	RLG00000032352
rosa_multiflora	Rmu_sc0011919.1_g000008
rosa_roxburghii	Rroxscaffold_1G00059410
rosa_rugosa	Rorug05G0041300 Rorug05G0041300 Rorug05G0041400 Rorug05G0041500
rosa_samantha	Rh5AG134800 Rh5BG133400 Rh5CG145200 Rh5DG134800
rosa_wichuraiana	Rw5G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	575
Acc36I	ACCTGC	1 cut(s)	1030
Acc65I	GGTACC	1 cut(s)	728
AccB1I	GGYRCC	2 cut(s)	179, 728
AccII	CGCG	1 cut(s)	1071
AciI	CCGC	2 cut(s)	491, 940
AclWI	GGATC	5 cut(s)	138, 245, 338, 577, 979
AcsI	RAATTY	1 cut(s)	562
AcuI	CTGAAG	4 cut(s)	209, 501, 952, 981
AdeI	CACNNNGTG	1 cut(s)	413
AfaI	GTAC	3 cut(s)	439, 730, 1079
AfeI	AGCGCT	1 cut(s)	1009
AfiI	CCNNNNNNNGG	3 cut(s)	166, 215, 835
AflII	CTTAAG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	440
AgsI	TTSAA	3 cut(s)	25, 598, 1028
AjnI	CCWGG	3 cut(s)	214, 709, 946
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	6 cut(s)	36, 314, 496, 638, 695, 809
AluI	AGCT	6 cut(s)	36, 314, 496, 638, 695, 809
AlwI	GGATC	5 cut(s)	138, 245, 338, 577, 979
Aor51HI	AGCGCT	1 cut(s)	1009
AoxI	GGCC	1 cut(s)	944
ApeKI	GCWGC	4 cut(s)	110, 311, 493, 692
ApoI	RAATTY	1 cut(s)	562
ArsI	GACNNNNNNTTYG	2 cut(s)	636, 668
AseI	ATTAAT	1 cut(s)	504
Asp718I	GGTACC	1 cut(s)	728
AspLEI	GCGC	2 cut(s)	1010, 1066
AsuHPI	GGTGA	3 cut(s)	644, 962, 1108
AxyI	CCTNAGG	2 cut(s)	125, 382
BanI	GGYRCC	2 cut(s)	179, 728
BauI	CACGAG	1 cut(s)	696
BbsI	GAAGAC	3 cut(s)	425, 958, 1095
BbvI	GCAGC	4 cut(s)	97, 323, 505, 704
BccI	CCATC	7 cut(s)	25, 191, 523, 743, 985, 1047, 1067
BciT130I	CCWGG	3 cut(s)	216, 711, 948
BfaI	CTAG	2 cut(s)	74, 435
BfoI	RGCGCY	1 cut(s)	1011
BfrI	CTTAAG	1 cut(s)	350
BfuAI	ACCTGC	1 cut(s)	1030
BisI	GCNGC	4 cut(s)	111, 312, 494, 693
BlsI	GCNGC	4 cut(s)	112, 313, 495, 694
Bme1390I	CCNGG	3 cut(s)	216, 711, 948
BmiI	GGNNCC	3 cut(s)	181, 730, 1084
BmrFI	CCNGG	3 cut(s)	216, 711, 948
BmsI	GCATC	6 cut(s)	283, 291, 459, 679, 784, 1075
BpiI	GAAGAC	3 cut(s)	425, 958, 1095
BpmI	CTGGAG	2 cut(s)	102, 1024
BpuEI	CTTGAG	1 cut(s)	833
BsaBI	GATNNNNATC	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	215, 710
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 215, 835
Bse118I	RCCGGY	1 cut(s)	942
Bse1I	ACTGG	4 cut(s)	85, 862, 913, 1007
Bse21I	CCTNAGG	2 cut(s)	125, 382
Bse3DI	GCAATG	1 cut(s)	405
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	3 cut(s)	216, 711, 948
BseDI	CCNNGG	2 cut(s)	215, 710
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	3 cut(s)	166, 215, 835
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	453, 578
BseNI	ACTGG	4 cut(s)	85, 862, 913, 1007
BseXI	GCAGC	4 cut(s)	97, 323, 505, 704
Bsh1236I	CGCG	1 cut(s)	1071
BshFI	GGCC	1 cut(s)	946
BshNI	GGYRCC	2 cut(s)	179, 728
BsiSI	CCGG	1 cut(s)	943
BslI	CCNNNNNNNGG	3 cut(s)	166, 215, 835
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	946
Bsp143I	GATC	6 cut(s)	130, 250, 343, 582, 784, 984
Bsp68I	TCGCGA	1 cut(s)	1071
BspACI	CCGC	2 cut(s)	491, 940
BspANI	GGCC	1 cut(s)	946
BspCNI	CTCAG	2 cut(s)	454, 579
BspFNI	CGCG	1 cut(s)	1071
BspHI	TCATGA	2 cut(s)	49, 579
BspLI	GGNNCC	3 cut(s)	181, 730, 1084
BspMI	ACCTGC	1 cut(s)	1030
BspPI	GGATC	5 cut(s)	138, 245, 338, 577, 979
BspT107I	GGYRCC	2 cut(s)	179, 728
BspTI	CTTAAG	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	405
BsrFI	RCCGGY	1 cut(s)	942
BsrI	ACTGG	4 cut(s)	85, 862, 913, 1007
BssAI	RCCGGY	1 cut(s)	942
BssECI	CCNNGG	2 cut(s)	215, 710
BssMI	GATC	6 cut(s)	130, 250, 343, 582, 784, 984
BssSI	CACGAG	1 cut(s)	696
Bst2BI	CACGAG	1 cut(s)	696
Bst2UI	CCWGG	3 cut(s)	216, 711, 948
BstAFI	CTTAAG	1 cut(s)	350
BstAPI	GCANNNNNTGC	2 cut(s)	293, 317
BstC8I	GCNNGC	2 cut(s)	819, 944
BstDEI	CTNAG	5 cut(s)	125, 382, 462, 587, 981
BstFNI	CGCG	1 cut(s)	1071
BstH2I	RGCGCY	1 cut(s)	1011
BstHHI	GCGC	2 cut(s)	1010, 1066
BstKTI	GATC	6 cut(s)	133, 253, 346, 585, 787, 987
BstMBI	GATC	6 cut(s)	130, 250, 343, 582, 784, 984
BstMWI	GCNNNNNNNGC	4 cut(s)	293, 317, 823, 1063
BstNI	CCWGG	3 cut(s)	216, 711, 948
BstNSI	RCATGY	4 cut(s)	110, 444, 821, 897
BstSCI	CCNGG	3 cut(s)	214, 709, 946
BstUI	CGCG	1 cut(s)	1071
BstV1I	GCAGC	4 cut(s)	97, 323, 505, 704
BstV2I	GAAGAC	3 cut(s)	425, 958, 1095
BstX2I	RGATCY	2 cut(s)	250, 984
BstXI	CCANNNNNNTGG	1 cut(s)	1093
BstYI	RGATCY	2 cut(s)	250, 984
Bsu36I	CCTNAGG	2 cut(s)	125, 382
BsuRI	GGCC	1 cut(s)	946
BtgZI	GCGATG	2 cut(s)	1052, 1086
BtsIMutI	CAGTG	1 cut(s)	976
BtuMI	TCGCGA	1 cut(s)	1071
BveI	ACCTGC	1 cut(s)	1030
Cac8I	GCNNGC	2 cut(s)	819, 944
CciI	TCATGA	2 cut(s)	49, 579
CfoI	GCGC	2 cut(s)	1010, 1066
Cfr10I	RCCGGY	1 cut(s)	942
Csp6I	GTAC	3 cut(s)	438, 729, 1078
CspCI	CAANNNNNGTGG	2 cut(s)	894, 929
CviQI	GTAC	3 cut(s)	438, 729, 1078
DdeI	CTNAG	5 cut(s)	125, 382, 462, 587, 981
DpnI	GATC	6 cut(s)	132, 252, 345, 584, 786, 986
DpnII	GATC	6 cut(s)	130, 250, 343, 582, 784, 984
DraIII	CACNNNGTG	1 cut(s)	413
DrdI	GACNNNNNNGTC	1 cut(s)	575
DseDI	GACNNNNNNGTC	1 cut(s)	575
Eco32I	GATATC	1 cut(s)	541
Eco47III	AGCGCT	1 cut(s)	1009
Eco57I	CTGAAG	4 cut(s)	209, 501, 952, 981
Eco81I	CCTNAGG	2 cut(s)	125, 382
EcoRI	GAATTC	1 cut(s)	562
EcoRII	CCWGG	3 cut(s)	214, 709, 946
EcoRV	GATATC	1 cut(s)	541
EcoT22I	ATGCAT	2 cut(s)	289, 306
FauI	CCCGC	1 cut(s)	947
FauNDI	CATATG	2 cut(s)	322, 511
Fnu4HI	GCNGC	4 cut(s)	111, 312, 494, 693
Fsp4HI	GCNGC	4 cut(s)	111, 312, 494, 693
FspBI	CTAG	2 cut(s)	74, 435
GlaI	GCGC	2 cut(s)	1009, 1065
GluI	GCNGC	4 cut(s)	111, 312, 494, 693
GsuI	CTGGAG	2 cut(s)	102, 1024
HaeII	RGCGCY	1 cut(s)	1011
HaeIII	GGCC	1 cut(s)	946
HapII	CCGG	1 cut(s)	943
HhaI	GCGC	2 cut(s)	1010, 1066
Hin6I	GCGC	2 cut(s)	1008, 1064
HinP1I	GCGC	2 cut(s)	1008, 1064
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	2 cut(s)	120, 840
HpaII	CCGG	1 cut(s)	943
HphI	GGTGA	3 cut(s)	644, 962, 1108
Hpy166II	GTNNAC	5 cut(s)	104, 265, 659, 916, 995
Hpy188I	TCNGA	4 cut(s)	280, 568, 613, 748
Hpy188III	TCNNGA	9 cut(s)	50, 209, 580, 586, 656, 812, 1028, 1070, 1107
Hpy8I	GTNNAC	5 cut(s)	104, 265, 659, 916, 995
HpyAV	CCTTC	3 cut(s)	895, 944, 1034
HpyCH4IV	ACGT	1 cut(s)	801
HpyF10VI	GCNNNNNNNGC	4 cut(s)	293, 317, 823, 1063
HpyF3I	CTNAG	5 cut(s)	125, 382, 462, 587, 981
HpySE526I	ACGT	1 cut(s)	801
HspAI	GCGC	2 cut(s)	1008, 1064
KpnI	GGTACC	1 cut(s)	732
KroI	GCCGGC	1 cut(s)	942
KroNI	GCCGGC	1 cut(s)	944
Kzo9I	GATC	6 cut(s)	130, 250, 343, 582, 784, 984
LmnI	GCTCC	3 cut(s)	501, 643, 1005
Lsp1109I	GCAGC	4 cut(s)	97, 323, 505, 704
LweI	GCATC	6 cut(s)	283, 291, 459, 679, 784, 1075
MaeI	CTAG	2 cut(s)	74, 435
MaeII	ACGT	1 cut(s)	801
MaeIII	GTNAC	6 cut(s)	61, 76, 142, 778, 950, 971
MalI	GATC	6 cut(s)	132, 252, 345, 584, 786, 986
MboI	GATC	6 cut(s)	130, 250, 343, 582, 784, 984
MboII	GAAGA	7 cut(s)	430, 478, 494, 538, 548, 958, 1095
MflI	RGATCY	2 cut(s)	250, 984
MluCI	AATT	2 cut(s)	501, 562
MlyI	GAGTC	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	832
MnlI	CCTC	8 cut(s)	77, 170, 213, 388, 613, 719, 883, 998
Mph1103I	ATGCAT	2 cut(s)	289, 306
MroNI	GCCGGC	1 cut(s)	942
MseI	TTAA	4 cut(s)	351, 504, 804, 921
MslI	CAYNNNNRTG	1 cut(s)	1071
MspA1I	CMGCKG	1 cut(s)	314
MspCI	CTTAAG	1 cut(s)	350
MspI	CCGG	1 cut(s)	943
MspR9I	CCNGG	3 cut(s)	216, 711, 948
Mva1269I	GAATGC	1 cut(s)	289
MvaI	CCWGG	3 cut(s)	216, 711, 948
MvnI	CGCG	1 cut(s)	1071
MwoI	GCNNNNNNNGC	4 cut(s)	293, 317, 823, 1063
NaeI	GCCGGC	1 cut(s)	944
NdeI	CATATG	2 cut(s)	322, 511
NdeII	GATC	6 cut(s)	130, 250, 343, 582, 784, 984
NgoMIV	GCCGGC	1 cut(s)	942
NlaIV	GGNNCC	3 cut(s)	181, 730, 1084
NmuCI	GTSAC	3 cut(s)	778, 950, 971
NruI	TCGCGA	1 cut(s)	1071
NsiI	ATGCAT	2 cut(s)	289, 306
NspI	RCATGY	4 cut(s)	110, 444, 821, 897
PaeI	GCATGC	1 cut(s)	821
PagI	TCATGA	2 cut(s)	49, 579
PciI	ACATGT	1 cut(s)	440
PctI	GAATGC	1 cut(s)	289
PdiI	GCCGGC	1 cut(s)	944
PfeI	GAWTC	1 cut(s)	840
PkrI	GCNGC	4 cut(s)	112, 313, 495, 694
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
PscI	ACATGT	1 cut(s)	440
PshBI	ATTAAT	1 cut(s)	504
Psp6I	CCWGG	3 cut(s)	214, 709, 946
PspGI	CCWGG	3 cut(s)	214, 709, 946
PspN4I	GGNNCC	3 cut(s)	181, 730, 1084
PsuI	RGATCY	2 cut(s)	250, 984
PvuII	CAGCTG	1 cut(s)	314
RruI	TCGCGA	1 cut(s)	1071
RsaI	GTAC	3 cut(s)	439, 730, 1079
RsaNI	GTAC	3 cut(s)	438, 729, 1078
RseI	CAYNNNNRTG	1 cut(s)	1071
SaqAI	TTAA	4 cut(s)	351, 504, 804, 921
SatI	GCNGC	4 cut(s)	111, 312, 494, 693
Sau3AI	GATC	6 cut(s)	130, 250, 343, 582, 784, 984
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	3 cut(s)	216, 711, 948
SfaNI	GCATC	6 cut(s)	283, 291, 459, 679, 784, 1075
SmiMI	CAYNNNNRTG	1 cut(s)	1071
SmlI	CTYRAG	2 cut(s)	350, 812
SmoI	CTYRAG	2 cut(s)	350, 812
SphI	GCATGC	1 cut(s)	821
Sse9I	AATT	2 cut(s)	501, 562
SsiI	CCGC	2 cut(s)	491, 940
SspI	AATATT	1 cut(s)	273
SspMI	CTAG	2 cut(s)	74, 435
StyD4I	CCNGG	3 cut(s)	214, 709, 946
TaiI	ACGT	1 cut(s)	804
TaqI	TCGA	1 cut(s)	724
TaqII	GACCGA	1 cut(s)	797
TasI	AATT	2 cut(s)	501, 562
TatI	WGTACW	1 cut(s)	437
TfiI	GAWTC	1 cut(s)	840
Tru1I	TTAA	4 cut(s)	351, 504, 804, 921
Tru9I	TTAA	4 cut(s)	351, 504, 804, 921
TscAI	CASTG	1 cut(s)	976
TseFI	GTSAC	3 cut(s)	778, 950, 971
TseI	GCWGC	4 cut(s)	110, 311, 493, 692
Tsp45I	GTSAC	3 cut(s)	778, 950, 971
TspDTI	ATGAA	3 cut(s)	38, 66, 545
TspGWI	ACGGA	3 cut(s)	468, 980, 1095
TspRI	CASTG	1 cut(s)	976
Vha464I	CTTAAG	1 cut(s)	350
VspI	ATTAAT	1 cut(s)	504
XapI	RAATTY	1 cut(s)	562
XceI	RCATGY	4 cut(s)	110, 444, 821, 897
XspI	CTAG	2 cut(s)	74, 435
Zsp2I	ATGCAT	2 cut(s)	289, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.