Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008850

Physical Location & Seq

Genomic Coordinates Forward (+)

26322072 .. 26323693

Gene Structure 1622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g24830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAGAGAAGAGAACCCATCAGAAACCAGAGCAAGATCGATCAAATTTTCCGACCAAAACCAGATTCCGAAATGTTCGAATGTGAAGGGCAGCAGCAATTCTTCGAGATTGAGGTCTGCTTCCTCATGGGGTTCTCACATTGTGAAAGGGCTGGCAGGGGACAAGAAGGCCAAGGCGCAGCCCACAGTCACCAGCAAGAAACCACCACTAACGGGGTACGATTTAGCAAACCAGAAGATCCCTTTTGCGCCGGCTCAGCCGCGCGTCAAGCGCTCGCTGATTGGCGATTTGGCGTGCTCTGTGAATGCTAATCAGGTTCATCCTCAGATGCATCCGACCCACCGGAGGCAGTCGTCACGAGATTTGTTTATTGAGCTTGATCACTTGAGGAACTTGCTTCGGGAGTCTAAGGAAAGGGAGTTTCAGTTGCAAGCTGAGTTGTCGGAGTGTAAGCGAAACCCGAGGGTCTTGGAGCTTGAGAGGGAACTTGAGGTGAAAAGGCGGGAGCTTGATGGTCTGGCTCGGAAAGCTGAGCTGCTGGAAGAAGAGAAAACTAGTCTCTCCGATCAGTTGACATCAATTTTGGAGAGGAGTGAAGTGATTTTGAAAAGAGAAGATCATGAAACCTCAGTGGCATCAGCATCGGGGAGTGCGGAAATGGAGGTTTTAGAGTTGAGGCGCCTGAACAAGGAGTTGCAGCTTCAGAAGAGAAATCTTGCTAGCAAATTTTCTTCTGCAACATCCCAGTTGGCTTCTCTGGCAAAGGCTTCTGAGGTACAATCAACTTCCTTGGTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

267

Amino Acids

29.87

Weight (kDa)

9.53

Isoelectric Point (pI)

65.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008850)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11100 FvH4_3g11100 FvH4_3g11100 FvH4_3g11100
malus_domestica	MD05G1264200.v1.1 MD10G1242300.v1.1
prunus_persica	Prupe.4G101400_v2.0.a1 Prupe.4G101400_v2.0.a1 Prupe.4G101400_v2.0.a1
pyrus_communis	pycom05g24830 pycom05g24840 pycom10g20290
rosa_chinensis	RchiOBHm_Chr5g0017991
rosa_laevigata	RLG00000032329
rosa_multiflora	Rmu_sc0010280.1_g000003 Rmu_sc0011118.1_g000004
rosa_roxburghii	Rroxscaffold_1G00059610
rosa_rugosa	Rorug05G0039500
rosa_samantha	Rh5AG132400 Rh5BG130500 Rh5CG142900 Rh5DG132500
rosa_wichuraiana	Rw5G011530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	678
AccII	CGCG	2 cut(s)	262, 264
AciI	CCGC	3 cut(s)	260, 502, 653
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	2 cut(s)	44, 725
AcuI	CTGAAG	1 cut(s)	686
AcyI	GRCGYC	1 cut(s)	679
AdeI	CACNNNGTG	1 cut(s)	142
AfaI	GTAC	2 cut(s)	218, 777
AfeI	AGCGCT	1 cut(s)	272
AfiI	CCNNNNNNNGG	3 cut(s)	212, 345, 688
AgsI	TTSAA	1 cut(s)	607
AhlI	ACTAGT	1 cut(s)	554
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AluBI	AGCT	7 cut(s)	376, 434, 475, 508, 530, 535, 700
AluI	AGCT	7 cut(s)	376, 434, 475, 508, 530, 535, 700
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	563
AlwI	GGATC	1 cut(s)	232
Ama87I	CYCGRG	1 cut(s)	460
Aor51HI	AGCGCT	1 cut(s)	272
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	5 cut(s)	90, 93, 178, 535, 697
ApoI	RAATTY	2 cut(s)	44, 725
ArsI	GACNNNNNNTTYG	2 cut(s)	565, 597
AspLEI	GCGC	5 cut(s)	178, 250, 264, 273, 681
AsuHPI	GGTGA	2 cut(s)	181, 505
AsuII	TTCGAA	1 cut(s)	77
AsuNHI	GCTAGC	1 cut(s)	719
AvaI	CYCGRG	1 cut(s)	460
BanI	GGYRCC	1 cut(s)	678
BauI	CACGAG	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	5 cut(s)	102, 105, 190, 522, 709
BccI	CCATC	2 cut(s)	25, 506
BcgI	CGANNNNNNTGC	2 cut(s)	624, 658
BclI	TGATCA	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	563
BcuI	ACTAGT	1 cut(s)	554
BfaI	CTAG	2 cut(s)	555, 720
BfoI	RGCGCY	2 cut(s)	274, 682
BisI	GCNGC	6 cut(s)	91, 94, 179, 260, 536, 698
BlpI	GCTNAGC	2 cut(s)	255, 531
BlsI	GCNGC	6 cut(s)	92, 95, 180, 261, 537, 699
BmeT110I	CYCGRG	1 cut(s)	460
BmiI	GGNNCC	1 cut(s)	680
BmrI	ACTGGG	1 cut(s)	739
BmsI	GCATC	4 cut(s)	318, 340, 644, 650
BmtI	GCTAGC	1 cut(s)	723
BmuI	ACTGGG	1 cut(s)	739
Bpu1102I	GCTNAGC	2 cut(s)	255, 531
Bpu14I	TTCGAA	1 cut(s)	77
BpuEI	CTTGAG	3 cut(s)	406, 497, 509
Bsa29I	ATCGAT	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	679
BsaJI	CCNNGG	3 cut(s)	171, 461, 789
BsaWI	WCCGGW	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 345, 688
Bse118I	RCCGGY	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	745
BseCI	ATCGAT	1 cut(s)	38
BseDI	CCNNGG	3 cut(s)	171, 461, 789
BseGI	GGATG	3 cut(s)	319, 331, 740
BseLI	CCNNNNNNNGG	3 cut(s)	212, 345, 688
BseMII	CTCAG	6 cut(s)	269, 338, 426, 522, 642, 762
BseNI	ACTGG	1 cut(s)	745
BseRI	GAGGAG	1 cut(s)	604
BseXI	GCAGC	5 cut(s)	102, 105, 190, 522, 709
Bsh1236I	CGCG	2 cut(s)	262, 264
BshFI	GGCC	1 cut(s)	170
BshNI	GGYRCC	1 cut(s)	678
BshVI	ATCGAT	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	299
BsiHKCI	CYCGRG	1 cut(s)	460
BsiSI	CCGG	2 cut(s)	251, 343
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	3 cut(s)	212, 345, 688
BsmAI	GTCTC	1 cut(s)	563
BsmFI	GGGAC	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	170
BsoBI	CYCGRG	1 cut(s)	460
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	6 cut(s)	35, 39, 237, 379, 565, 616
Bsp1720I	GCTNAGC	2 cut(s)	255, 531
BspACI	CCGC	3 cut(s)	260, 502, 653
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	6 cut(s)	268, 337, 427, 523, 641, 763
BspDI	ATCGAT	1 cut(s)	38
BspFNI	CGCG	2 cut(s)	262, 264
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	1 cut(s)	680
BspOI	GCTAGC	1 cut(s)	723
BspPI	GGATC	1 cut(s)	232
BspT104I	TTCGAA	1 cut(s)	77
BspT107I	GGYRCC	1 cut(s)	678
BsrFI	RCCGGY	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	745
BssAI	RCCGGY	1 cut(s)	250
BssECI	CCNNGG	3 cut(s)	171, 461, 789
BssMI	GATC	6 cut(s)	35, 39, 237, 379, 565, 616
BssNI	GRCGYC	1 cut(s)	679
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	2 cut(s)	171, 789
Bst2BI	CACGAG	1 cut(s)	357
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	3 cut(s)	3, 540, 701
BstACI	GRCGYC	1 cut(s)	679
BstBI	TTCGAA	1 cut(s)	77
BstC8I	GCNNGC	6 cut(s)	153, 252, 275, 295, 432, 721
BstDEI	CTNAG	7 cut(s)	255, 324, 408, 435, 531, 628, 771
BstENI	CCTNNNNNAGG	1 cut(s)	686
BstF5I	GGATG	3 cut(s)	319, 331, 740
BstFNI	CGCG	2 cut(s)	262, 264
BstH2I	RGCGCY	2 cut(s)	274, 682
BstHHI	GCGC	5 cut(s)	178, 250, 264, 273, 681
BstKTI	GATC	6 cut(s)	38, 42, 240, 382, 568, 619
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	6 cut(s)	35, 39, 237, 379, 565, 616
BstMWI	GCNNNNNNNGC	5 cut(s)	256, 268, 270, 527, 758
BstUI	CGCG	2 cut(s)	262, 264
BstV1I	GCAGC	5 cut(s)	102, 105, 190, 522, 709
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
Bsu15I	ATCGAT	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	170
BsuTUI	ATCGAT	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	319, 331, 740
BtsIMutI	CAGTG	1 cut(s)	636
Cac8I	GCNNGC	6 cut(s)	153, 252, 275, 295, 432, 721
CciI	TCATGA	1 cut(s)	619
CfoI	GCGC	5 cut(s)	178, 250, 264, 273, 681
Cfr10I	RCCGGY	1 cut(s)	250
ClaI	ATCGAT	1 cut(s)	38
CseI	GACGC	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	217, 776
CviAII	CATG	2 cut(s)	126, 620
CviQI	GTAC	2 cut(s)	217, 776
DdeI	CTNAG	7 cut(s)	255, 324, 408, 435, 531, 628, 771
DinI	GGCGCC	1 cut(s)	680
DpnI	GATC	6 cut(s)	37, 41, 239, 381, 567, 618
DpnII	GATC	6 cut(s)	35, 39, 237, 379, 565, 616
DraIII	CACNNNGTG	1 cut(s)	142
Eam1104I	CTCTTC	3 cut(s)	3, 540, 701
EarI	CTCTTC	3 cut(s)	3, 540, 701
Eco130I	CCWWGG	2 cut(s)	171, 789
Eco47III	AGCGCT	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	686
Eco88I	CYCGRG	1 cut(s)	460
EcoNI	CCTNNNNNAGG	1 cut(s)	686
EcoT14I	CCWWGG	2 cut(s)	171, 789
EcoT22I	ATGCAT	1 cut(s)	333
EgeI	GGCGCC	1 cut(s)	680
EheI	GGCGCC	1 cut(s)	680
ErhI	CCWWGG	2 cut(s)	171, 789
FaeI	CATG	2 cut(s)	129, 623
FaiI	YATR	2 cut(s)	127, 621
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	2 cut(s)	125, 619
FauI	CCCGC	1 cut(s)	495
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	6 cut(s)	91, 94, 179, 260, 536, 698
FokI	GGATG	3 cut(s)	306, 318, 727
Fsp4HI	GCNGC	6 cut(s)	91, 94, 179, 260, 536, 698
FspBI	CTAG	2 cut(s)	555, 720
GlaI	GCGC	5 cut(s)	177, 249, 263, 272, 680
GluI	GCNGC	6 cut(s)	91, 94, 179, 260, 536, 698
HaeII	RGCGCY	2 cut(s)	274, 682
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	2 cut(s)	251, 343
HgaI	GACGC	1 cut(s)	253
HhaI	GCGC	5 cut(s)	178, 250, 264, 273, 681
Hin1I	GRCGYC	1 cut(s)	679
Hin1II	CATG	2 cut(s)	129, 623
Hin6I	GCGC	5 cut(s)	176, 248, 262, 271, 679
HinP1I	GCGC	5 cut(s)	176, 248, 262, 271, 679
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HinfI	GANTC	2 cut(s)	64, 404
HpaII	CCGG	2 cut(s)	251, 343
HphI	GGTGA	2 cut(s)	181, 505
Hpy166II	GTNNAC	1 cut(s)	573
Hpy188III	TCNNGA	4 cut(s)	105, 357, 401, 620
Hpy8I	GTNNAC	1 cut(s)	573
HpyAV	CCTTC	2 cut(s)	79, 160
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	4 cut(s)	331, 430, 697, 737
HpyF10VI	GCNNNNNNNGC	5 cut(s)	256, 268, 270, 527, 758
HpyF3I	CTNAG	7 cut(s)	255, 324, 408, 435, 531, 628, 771
Hsp92I	GRCGYC	1 cut(s)	679
Hsp92II	CATG	2 cut(s)	129, 623
HspAI	GCGC	5 cut(s)	176, 248, 262, 271, 679
KasI	GGCGCC	1 cut(s)	678
KroI	GCCGGC	1 cut(s)	250
KroNI	GCCGGC	1 cut(s)	252
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	6 cut(s)	35, 39, 237, 379, 565, 616
LmnI	GCTCC	2 cut(s)	472, 505
Lsp1109I	GCAGC	5 cut(s)	102, 105, 190, 522, 709
LweI	GCATC	4 cut(s)	318, 340, 644, 650
MaeI	CTAG	2 cut(s)	555, 720
MaeIII	GTNAC	3 cut(s)	187, 354, 793
MalI	GATC	6 cut(s)	37, 41, 239, 381, 567, 618
MboI	GATC	6 cut(s)	35, 39, 237, 379, 565, 616
MboII	GAAGA	8 cut(s)	20, 93, 247, 554, 557, 626, 718, 723
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	4 cut(s)	44, 97, 579, 725
Mly113I	GGCGCC	1 cut(s)	679
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	3 cut(s)	75, 359, 423
Mph1103I	ATGCAT	1 cut(s)	333
MroNI	GCCGGC	1 cut(s)	250
MseI	TTAA	1 cut(s)	799
MspI	CCGG	2 cut(s)	251, 343
Mva1269I	GAATGC	1 cut(s)	310
MvnI	CGCG	2 cut(s)	262, 264
MwoI	GCNNNNNNNGC	5 cut(s)	256, 268, 270, 527, 758
NaeI	GCCGGC	1 cut(s)	252
NarI	GGCGCC	1 cut(s)	679
NdeII	GATC	6 cut(s)	35, 39, 237, 379, 565, 616
NgoMIV	GCCGGC	1 cut(s)	250
NheI	GCTAGC	1 cut(s)	719
NlaIII	CATG	2 cut(s)	129, 623
NlaIV	GGNNCC	1 cut(s)	680
NmuCI	GTSAC	2 cut(s)	187, 354
NsiI	ATGCAT	1 cut(s)	333
NspV	TTCGAA	1 cut(s)	77
PagI	TCATGA	1 cut(s)	619
PctI	GAATGC	1 cut(s)	310
PdiI	GCCGGC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	6 cut(s)	92, 95, 180, 261, 537, 699
PleI	GAGTC	1 cut(s)	412
PluTI	GGCGCC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	680
PsuI	RGATCY	1 cut(s)	237
RsaI	GTAC	2 cut(s)	218, 777
RsaNI	GTAC	2 cut(s)	217, 776
SaqAI	TTAA	1 cut(s)	799
SatI	GCNGC	6 cut(s)	91, 94, 179, 260, 536, 698
Sau3AI	GATC	6 cut(s)	35, 39, 237, 379, 565, 616
SchI	GAGTC	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	299
SfaNI	GCATC	4 cut(s)	318, 340, 644, 650
SfoI	GGCGCC	1 cut(s)	680
SfuI	TTCGAA	1 cut(s)	77
SmlI	CTYRAG	3 cut(s)	385, 476, 488
SmoI	CTYRAG	3 cut(s)	385, 476, 488
SpeI	ACTAGT	1 cut(s)	554
Sse9I	AATT	4 cut(s)	44, 97, 579, 725
SsiI	CCGC	3 cut(s)	260, 502, 653
SspDI	GGCGCC	1 cut(s)	678
SspMI	CTAG	2 cut(s)	555, 720
StyI	CCWWGG	2 cut(s)	171, 789
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	3 cut(s)	38, 77, 104
TasI	AATT	4 cut(s)	44, 97, 579, 725
TauI	GCSGC	1 cut(s)	262
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	799
Tru9I	TTAA	1 cut(s)	799
TscAI	CASTG	1 cut(s)	636
TseFI	GTSAC	2 cut(s)	187, 354
TseI	GCWGC	5 cut(s)	90, 93, 178, 535, 697
Tsp45I	GTSAC	2 cut(s)	187, 354
TspDTI	ATGAA	2 cut(s)	308, 636
TspRI	CASTG	1 cut(s)	636
XagI	CCTNNNNNAGG	1 cut(s)	686
XapI	RAATTY	2 cut(s)	44, 725
XspI	CTAG	2 cut(s)	555, 720
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.