Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011118.1

Orthogroup ID

OG0008850

Physical Location & Seq

Genomic Coordinates Reverse (-)

20240 .. 20563

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011118.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgagagaagagaacccatctgaaaccagagcaagcgcaaccaagttttctgaccaaaaccaggcaccaaggcctcaaaacccaaagggcaatagcaactcctcaaagttgaagtctgctttttcatggggttctcatatagtcaaaggatttggaggagacgagaagaccaaggtgctaaatgcaattacaagcaagaagcctccgctaattggttgcgatttggcgaatccgaagacccaatttccattagcccctgctcactcacaggtcaagcgttcgctgatcggagacttatcttgctcagtcaacaatgctaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.48

Weight (kDa)

9.8

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008850)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11100 FvH4_3g11100 FvH4_3g11100 FvH4_3g11100
malus_domestica	MD05G1264200.v1.1 MD10G1242300.v1.1
prunus_persica	Prupe.4G101400_v2.0.a1 Prupe.4G101400_v2.0.a1 Prupe.4G101400_v2.0.a1
pyrus_communis	pycom05g24830 pycom05g24840 pycom10g20290
rosa_chinensis	RchiOBHm_Chr5g0017991
rosa_laevigata	RLG00000032329
rosa_multiflora	Rmu_sc0010280.1_g000003 Rmu_sc0011118.1_g000004
rosa_roxburghii	Rroxscaffold_1G00059610
rosa_rugosa	Rorug05G0039500
rosa_samantha	Rh5AG132400 Rh5BG130500 Rh5CG142900 Rh5DG132500
rosa_wichuraiana	Rw5G011530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	64
AciI	CCGC	1 cut(s)	206
AfiI	CCNNNNNNNGG	2 cut(s)	61, 212
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	60
Alw26I	GTCTC	2 cut(s)	153, 285
AoxI	GGCC	1 cut(s)	71
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspLEI	GCGC	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	64
BbsI	GAAGAC	2 cut(s)	173, 242
BccI	CCATC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	153, 285
Bme1390I	CCNGG	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	62
BpiI	GAAGAC	2 cut(s)	173, 242
BsaJI	CCNNGG	2 cut(s)	68, 171
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 212
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	2 cut(s)	68, 171
BseLI	CCNNNNNNNGG	2 cut(s)	61, 212
BseMII	CTCAG	1 cut(s)	318
BseRI	GAGGAG	2 cut(s)	91, 171
BshFI	GGCC	1 cut(s)	73
BshNI	GGYRCC	1 cut(s)	64
BslI	CCNNNNNNNGG	2 cut(s)	61, 212
BsmAI	GTCTC	2 cut(s)	153, 285
BsmBI	CGTCTC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	285
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	68, 171
BssMI	GATC	1 cut(s)	285
BssT1I	CCWWGG	2 cut(s)	68, 171
Bst2UI	CCWGG	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	1 cut(s)	288
BstMAI	GTCTC	2 cut(s)	153, 285
BstMBI	GATC	1 cut(s)	285
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	60
BstV2I	GAAGAC	2 cut(s)	173, 242
BsuRI	GGCC	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	34
CfoI	GCGC	1 cut(s)	38
CviAII	CATG	1 cut(s)	126
CviJI	RGCY	3 cut(s)	73, 202, 254
CviKI_1	RGCY	3 cut(s)	73, 202, 254
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	68, 171
Eco147I	AGGCCT	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	2 cut(s)	68, 171
ErhI	CCWWGG	2 cut(s)	68, 171
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	1 cut(s)	129
FaiI	YATR	3 cut(s)	127, 138, 140
FatI	CATG	1 cut(s)	125
GlaI	GCGC	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	129
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	4 cut(s)	22, 52, 234, 290
Hpy8I	GTNNAC	1 cut(s)	310
HpyCH4V	TGCA	1 cut(s)	185
HpyF3I	CTNAG	1 cut(s)	304
Hsp92II	CATG	1 cut(s)	129
HspAI	GCGC	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	285
LpnPI	CCDG	5 cut(s)	40, 47, 74, 254, 270
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MboII	GAAGA	3 cut(s)	20, 178, 247
MluCI	AATT	4 cut(s)	186, 210, 242, 319
MnlI	CCTC	4 cut(s)	84, 112, 149, 213
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
NdeII	GATC	1 cut(s)	285
NlaIII	CATG	1 cut(s)	129
NlaIV	GGNNCC	1 cut(s)	66
PceI	AGGCCT	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	66
Sau3AI	GATC	1 cut(s)	285
ScrFI	CCNGG	1 cut(s)	62
SetI	ASST	2 cut(s)	177, 273
Sse9I	AATT	4 cut(s)	186, 210, 242, 319
SseBI	AGGCCT	1 cut(s)	73
SsiI	CCGC	1 cut(s)	206
StuI	AGGCCT	1 cut(s)	73
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	2 cut(s)	68, 171
TasI	AATT	4 cut(s)	186, 210, 242, 319
TfiI	GAWTC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.