Rorug05G0039500

Protein CHUP1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008850
Physical Location & Seq
Reverse (-)
3398867 .. 3429072
30206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0039500.1

Sequence Viewer

Length: 2511 bp
ATGCAACTGGGTAGTGTTACTTTGTTTTTCTTATTCATCTTCAGTTTGCTTCTGTCACAGTATGGCGCTGAAGTATATAACATAACTCCTTCACACCCATTATCCGAGGGAGAAACTCTAGTCTCTCCTGGTCTAATATTCGAATTGGGCTTCTTCAGTCCTAAGAGTTCTGGTAACAAGTATGTGGGAATATGGCACAAGAACATATTTCCACAAAAAGTAGTATGGGTGGCTAACAGAGATAAGCCTCTTGCTCTTATAGACACCCTGGCTAGTTTGAGAGTTAGCAGCAATGGGAGTCTGGATCTTGTGGATGGGAAGCAGAATTCTGTTTGGTCAACCAATGTTACAATACAGGTTTCATCATCTAATACTAGTTCAGTTGCTGCAGTTCTTTCAGACGATGGAAACTTTGTTGTCAAAGATGTTATCAGAGCTGGTGAATCAATATGGCAGAGCTTTCATCATCCTGGTGACACTTTGCTACCAAACATGATGTTGGGATACGATATTAAAAATGGAAAAAGCCGTTTCTTAACTGCCTGGAAAAGTGAGAGTGATCCATCTAGTGGGATGTATACAATTGCACTCGGACGACGAACAGATAGGCCAGCACAAATGATTGTTTGGATTAATGGATCAATTCCCTTCAGGAGAACTGGGCCCTGGGATAAATCAAAATTCATCGGCATCCCAGATATGGATTATCGATATCTTAGTGAATTTAAACTAGATGAAAATGCGGAAGAGGGAACAAAGTATTTCTCATTTAACTTACCAGAGAAAACTCTCGCATATGTAGACCTCTCTTCACAGGGAAAGATAAAGCATATGAGTTCAGAAAATGGTAGGAATTGGTCACTCAAGTACGAGTCACAACAGAATCCATGTAACATCTATGGAGCATGTGGGGCTTATGGGGTTTGCAGCGTTTCTAGATCTCCAATTTGCAAATGTTTGAAAGGGTTTGTACCAAAGTCAGACCATGAATGGAGCAAAGGAGACTGGACCGGTGGGTGTGTAAGGAAAACCGAATTGTTCTGTGAGAGACAAACAAATAAGAAGTCAGTGCCATTGCAAGGAAAAAAAGATGATAATGATGATGGGTTTTGGAAGATCATACAGGCGAAAGTACCAGATTATTATCAGTATATTACATCTTTGGATCTTGAAGACAACTTCAATGACTGCAAGTTACAGTGCCTAAATAATTGTTCGTGCCTGGCTTATGCACTTGTTAATAATATTGGGTGTCTAGTCTGGTACAAAGACCTTATTGATATACAACAATTTTCCAAGGGGGGAGTTGATATTTATATTCACCTAGCACGCAGAGAACTAGGTGAAGGAAAGCCAATTAAGTTGATTGCCTGCCTTACAGCTATTGGTTTAATTATTATCTTGGTTGCCATAGTGTTCGGTTTGCACAGGTTGCGAGCTAATCAAAAGGAATCGACTCCAACTTCTAGGGACACTCTTCGAGAATATATTGGAAAACATGATCCATCAGAGCTATTGATCTATGATTTTGGTACCATATTAACTGCTACAGACAATTTCAGCATTACAAACAAACTCGGGCAAGGAGGCTTTGGTCCTGTTTATAAGGGTATACTACAAGATGGGAAGGAAATAGCTGTAAAAAGACTATCTAGTAGCTCAGGACAAGGCATTGAAGAGTTCAAGAATGAAATGCTGTTGATCTCCAATCTTCAACACAAAAATCTTGTAAGGATGATGGGTTGCTGCGTTAAAGAGGATGAGAAGTTATTGGTTTATGAGTTCATGCCAAACAAAAGCTTGGATACGATTCTATTCGATCCAATGAGGAGAGGAGAGCTTGATTGGGATATACGCGTTAATATTATTCAGGGTATTGGTAGAGGACTTCTTTATCTCCATCATGATTCCTATATGAAGGTAATACATAGAGATCTGAAAGTTAGCAACATTCTCCTGGATGAAAAAATGAACCCAAAAATTTCAGATTTTGGATTGGCACGAATTGTTGAAGGAACACATTGTCTAGAAAATACTCAAAAGGTTGTGGGAACACGTGGTTATATGTCTCCAGAGTATGTCATGGGTGGGATATTTTCTGAAAAATCTGATGTCTACAGTTTTGGAGTTTTGATGCTGGAGATTATTAGCAGCAAGAAGAATAACAACTTCTTTTTATATGACCAACAACTAGGGTTTCTAGCCCATGCATGGAACTTGTGGTATCAAGGCAAGGGATTGGAATTGGTAGATGATGTATTAGATGATTCATATTCCTCATCAGAAGTATTGAAATGTGTGCACATTGGGCTTCTTTGTGTACAAGATAATGCTGCGGATAGGCCAACCATGAAGGATATAGCTTTAATGCTAAGCAGTGAGAAAGATGGTCCACAACCTAAGAGGCCTGTGTTCACTATGCAAAATTCATTTCCTCGTCCTCAACCGCAGTATGAACATACTAGTTCCTCCACGAATGAAGGTACTATTACAGTGATTGAAGGACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

836

Amino Acids

93.96

Weight (kDa)

6.52

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 74 - 183 2.3e-29 D-mannose binding lectin
S_locus_glycop PF00954 219 - 327 3.1e-27 S-locus glycoprotein domain
PAN_2 PF08276 366 - 428 2.7e-15 PAN-like domain
Pkinase PF00069 521 - 720 1.1e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 522 - 788 1.1e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1605
Acc65I GGTACC 1 cut(s) 1532
AccB1I GGYRCC 1 cut(s) 1532
AccB7I CCANNNNNTGG 1 cut(s) 569
AccI GTMKAC 4 cut(s) 578, 801, 1612, 2115
AccII CGCG 1 cut(s) 1857
AciI CCGC 3 cut(s) 743, 2336, 2447
AclWI GGATC 6 cut(s) 312, 554, 646, 1173, 1496, 1814
AcsI RAATTY 5 cut(s) 325, 680, 722, 1980, 2425
AcuI CTGAAG 4 cut(s) 25, 90, 139, 634
AcvI CACGTG 1 cut(s) 2057
AfaI GTAC 7 cut(s) 869, 972, 1134, 1265, 1534, 2322, 2485
AfiI CCNNNNNNNGG 4 cut(s) 569, 700, 1079, 2211
AflIII ACRYGT 2 cut(s) 1855, 2054
AgeI ACCGGT 1 cut(s) 1010
AgsI TTSAA 9 cut(s) 961, 1172, 1183, 1676, 1684, 1715, 2012, 2293, 2501
AhlI ACTAGT 2 cut(s) 374, 2462
AjnI CCWGG 7 cut(s) 127, 267, 469, 542, 665, 1221, 1956
Alw21I GWGCWC 1 cut(s) 2304
Alw26I GTCTC 4 cut(s) 127, 996, 1042, 2073
Alw44I GTGCAC 1 cut(s) 2300
AlwI GGATC 6 cut(s) 312, 554, 646, 1173, 1496, 1814
AlwNI CAGNNNCTG 1 cut(s) 386
Ama87I CYCGRG 1 cut(s) 1577
AoxI GGCC 4 cut(s) 608, 662, 2342, 2405
ApaI GGGCCC 1 cut(s) 666
ApaLI GTGCAC 1 cut(s) 2300
ApeKI GCWGC 6 cut(s) 288, 386, 927, 1746, 2151, 2333
ApoI RAATTY 5 cut(s) 325, 680, 722, 1980, 2425
ArsI GACNNNNNNTTYG 2 cut(s) 1049, 1081
AseI ATTAAT 1 cut(s) 633
AsiGI ACCGGT 1 cut(s) 1010
Asp718I GGTACC 1 cut(s) 1532
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 5 cut(s) 662, 663, 1008, 1595, 2390
AsuHPI GGTGA 4 cut(s) 452, 485, 1313, 1355
AsuII TTCGAA 1 cut(s) 141
AvaI CYCGRG 1 cut(s) 1577
AvaII GGWCC 3 cut(s) 1008, 1595, 2390
BaeGI GKGCMC 2 cut(s) 666, 2304
BanI GGYRCC 1 cut(s) 1532
BanII GRGCYC 1 cut(s) 666
BbrPI CACGTG 1 cut(s) 2057
BbsI GAAGAC 1 cut(s) 1179
Bbv12I GWGCWC 1 cut(s) 2304
BbvI GCAGC 6 cut(s) 300, 373, 939, 1733, 2163, 2320
BccI CCATC 9 cut(s) 308, 398, 571, 1097, 1513, 1616, 1732, 1908, 2381
BceAI ACGGC 1 cut(s) 513
BciT130I CCWGG 7 cut(s) 129, 269, 471, 544, 667, 1223, 1958
BciVI GTATCC 2 cut(s) 497, 1798
BcoDI GTCTC 4 cut(s) 127, 996, 1042, 2073
BcuI ACTAGT 2 cut(s) 374, 2462
BfmI CTRYAG 3 cut(s) 387, 1548, 2116
BfoI RGCGCY 1 cut(s) 69
BfuI GTATCC 2 cut(s) 497, 1798
BglII AGATCT 2 cut(s) 938, 1933
BisI GCNGC 6 cut(s) 289, 387, 928, 1747, 2152, 2334
BlpI GCTNAGC 1 cut(s) 2372
BlsI GCNGC 6 cut(s) 290, 388, 929, 1748, 2153, 2335
Bme1390I CCNGG 7 cut(s) 129, 269, 471, 544, 667, 1223, 1958
Bme18I GGWCC 3 cut(s) 1008, 1595, 2390
BmeT110I CYCGRG 1 cut(s) 1577
BmgT120I GGNCC 5 cut(s) 662, 663, 1008, 1595, 2390
BmiI GGNNCC 2 cut(s) 664, 1534
BmrFI CCNGG 7 cut(s) 129, 269, 471, 544, 667, 1223, 1958
BmrI ACTGGG 2 cut(s) 17, 669
BmsI GCATC 2 cut(s) 699, 2124
BmuI ACTGGG 2 cut(s) 17, 669
BpiI GAAGAC 1 cut(s) 1179
BpmI CTGGAG 2 cut(s) 2055, 2159
Bpu10I CCTNAGC 1 cut(s) 1660
Bpu1102I GCTNAGC 1 cut(s) 2372
Bpu14I TTCGAA 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 848
Bsa29I ATCGAT 1 cut(s) 709
BsaAI YACGTR 1 cut(s) 2057
BsaBI GATNNNNATC 1 cut(s) 1143
BsaJI CCNNGG 5 cut(s) 105, 267, 665, 666, 1296
BsaWI WCCGGW 1 cut(s) 1010
Bsc4I CCNNNNNNNGG 4 cut(s) 569, 700, 1079, 2211
Bse118I RCCGGY 1 cut(s) 1010
Bse1I ACTGG 3 cut(s) 12, 664, 1010
Bse3DI GCAATG 2 cut(s) 298, 1073
Bse8I GATNNNNATC 1 cut(s) 1143
BseBI CCWGG 7 cut(s) 129, 269, 471, 544, 667, 1223, 1958
BseCI ATCGAT 1 cut(s) 709
BseDI CCNNGG 5 cut(s) 105, 267, 665, 666, 1296
BseGI GGATG 7 cut(s) 319, 466, 579, 690, 1740, 1765, 1966
BseJI GATNNNNATC 1 cut(s) 1143
BseLI CCNNNNNNNGG 4 cut(s) 569, 700, 1079, 2211
BseMI GCAATG 2 cut(s) 298, 1073
BseMII CTCAG 1 cut(s) 1674
BseNI ACTGG 3 cut(s) 12, 664, 1010
BseRI GAGGAG 2 cut(s) 1843, 1848
BseSI GKGCMC 2 cut(s) 666, 2304
BseXI GCAGC 6 cut(s) 300, 373, 939, 1733, 2163, 2320
Bsh1236I CGCG 1 cut(s) 1857
BshFI GGCC 4 cut(s) 610, 664, 2344, 2407
BshNI GGYRCC 1 cut(s) 1532
BshTI ACCGGT 1 cut(s) 1010
BshVI ATCGAT 1 cut(s) 709
BsiHKAI GWGCWC 1 cut(s) 2304
BsiHKCI CYCGRG 1 cut(s) 1577
BsiSI CCGG 1 cut(s) 1011
BslFI GGGAC 1 cut(s) 1484
BslI CCNNNNNNNGG 4 cut(s) 569, 700, 1079, 2211
BsmAI GTCTC 4 cut(s) 127, 996, 1042, 2073
BsmFI GGGAC 1 cut(s) 1484
BsnI GGCC 4 cut(s) 610, 664, 2344, 2407
BsoBI CYCGRG 1 cut(s) 1577
Bsp119I TTCGAA 1 cut(s) 141
Bsp120I GGGCCC 1 cut(s) 662
Bsp1286I GDGCHC 2 cut(s) 666, 2304
Bsp1407I TGTACA 1 cut(s) 2320
Bsp1720I GCTNAGC 1 cut(s) 2372
BspACI CCGC 3 cut(s) 743, 2336, 2447
BspANI GGCC 4 cut(s) 610, 664, 2344, 2407
BspCNI CTCAG 1 cut(s) 1673
BspDI ATCGAT 1 cut(s) 709
BspFNI CGCG 1 cut(s) 1857
BspHI TCATGA 1 cut(s) 1903
BspLI GGNNCC 2 cut(s) 664, 1534
BspMAI CTGCAG 1 cut(s) 391
BspPI GGATC 6 cut(s) 312, 554, 646, 1173, 1496, 1814
BspT104I TTCGAA 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 1532
BsrDI GCAATG 2 cut(s) 298, 1073
BsrFI RCCGGY 1 cut(s) 1010
BsrGI TGTACA 1 cut(s) 2320
BsrI ACTGG 3 cut(s) 12, 664, 1010
BssAI RCCGGY 1 cut(s) 1010
BssECI CCNNGG 5 cut(s) 105, 267, 665, 666, 1296
BssNAI GTATAC 2 cut(s) 579, 1613
BssT1I CCWWGG 1 cut(s) 1296
Bst1107I GTATAC 2 cut(s) 579, 1613
Bst2UI CCWGG 7 cut(s) 129, 269, 471, 544, 667, 1223, 1958
Bst4CI ACNGT 4 cut(s) 60, 1200, 2120, 2494
Bst6I CTCTTC 4 cut(s) 741, 814, 1482, 1671
BstAPI GCANNNNNTGC 1 cut(s) 1432
BstAUI TGTACA 1 cut(s) 2320
BstBAI YACGTR 1 cut(s) 2057
BstBI TTCGAA 1 cut(s) 141
BstC8I GCNNGC 4 cut(s) 612, 1330, 1372, 1437
BstDEI CTNAG 5 cut(s) 162, 716, 1660, 2372, 2400
BstF5I GGATG 7 cut(s) 319, 466, 579, 690, 1740, 1765, 1966
BstFNI CGCG 1 cut(s) 1857
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstMAI GTCTC 4 cut(s) 127, 996, 1042, 2073
BstMWI GCNNNNNNNGC 3 cut(s) 911, 1432, 2308
BstNI CCWGG 7 cut(s) 129, 269, 471, 544, 667, 1223, 1958
BstNSI RCATGY 1 cut(s) 909
BstSCI CCNGG 7 cut(s) 127, 267, 469, 542, 665, 1221, 1956
BstSFI CTRYAG 3 cut(s) 387, 1548, 2116
BstSLI GKGCMC 2 cut(s) 666, 2304
BstUI CGCG 1 cut(s) 1857
BstV1I GCAGC 6 cut(s) 300, 373, 939, 1733, 2163, 2320
BstV2I GAAGAC 1 cut(s) 1179
BstX2I RGATCY 4 cut(s) 304, 938, 1165, 1933
BstYI RGATCY 4 cut(s) 304, 938, 1165, 1933
BstZ17I GTATAC 2 cut(s) 579, 1613
Bsu15I ATCGAT 1 cut(s) 709
BsuI GTATCC 2 cut(s) 497, 1798
BsuRI GGCC 4 cut(s) 610, 664, 2344, 2407
BsuTUI ATCGAT 1 cut(s) 709
BtsCI GGATG 7 cut(s) 319, 466, 579, 690, 1740, 1765, 1966
BtsI GCAGTG 1 cut(s) 2383
BtsIMutI CAGTG 4 cut(s) 1074, 1205, 2383, 2499
Cac8I GCNNGC 4 cut(s) 612, 1330, 1372, 1437
CaiI CAGNNNCTG 1 cut(s) 386
CciI TCATGA 1 cut(s) 1903
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 1010
Cfr13I GGNCC 5 cut(s) 662, 663, 1008, 1595, 2390
ClaI ATCGAT 1 cut(s) 709
Csp6I GTAC 7 cut(s) 868, 971, 1133, 1264, 1533, 2321, 2484
CspAI ACCGGT 1 cut(s) 1010
CviQI GTAC 7 cut(s) 868, 971, 1133, 1264, 1533, 2321, 2484
DdeI CTNAG 5 cut(s) 162, 716, 1660, 2372, 2400
DraI TTTAAA 1 cut(s) 727
Eam1104I CTCTTC 4 cut(s) 741, 814, 1482, 1671
EarI CTCTTC 4 cut(s) 741, 814, 1482, 1671
Eco130I CCWWGG 1 cut(s) 1296
Eco147I AGGCCT 1 cut(s) 2407
Eco24I GRGCYC 1 cut(s) 666
Eco32I GATATC 1 cut(s) 713
Eco47I GGWCC 3 cut(s) 1008, 1595, 2390
Eco57I CTGAAG 4 cut(s) 25, 90, 139, 634
Eco72I CACGTG 1 cut(s) 2057
Eco88I CYCGRG 1 cut(s) 1577
EcoO109I RGGNCCY 1 cut(s) 663
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 7 cut(s) 127, 267, 469, 542, 665, 1221, 1956
EcoRV GATATC 1 cut(s) 713
EcoT14I CCWWGG 1 cut(s) 1296
EcoT22I ATGCAT 1 cut(s) 2212
EcoT38I GRGCYC 1 cut(s) 666
ErhI CCWWGG 1 cut(s) 1296
FaqI GGGAC 1 cut(s) 1484
FauNDI CATATG 2 cut(s) 796, 831
FblI GTMKAC 4 cut(s) 578, 801, 1612, 2115
Fnu4HI GCNGC 6 cut(s) 289, 387, 928, 1747, 2152, 2334
FokI GGATG 7 cut(s) 326, 453, 586, 677, 1747, 1772, 1973
FriOI GRGCYC 1 cut(s) 666
Fsp4HI GCNGC 6 cut(s) 289, 387, 928, 1747, 2152, 2334
GlaI GCGC 1 cut(s) 67
GluI GCNGC 6 cut(s) 289, 387, 928, 1747, 2152, 2334
GsuI CTGGAG 2 cut(s) 2055, 2159
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 4 cut(s) 610, 664, 2344, 2407
HapII CCGG 1 cut(s) 1011
HhaI GCGC 1 cut(s) 68
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 339
HindII GTYRAC 1 cut(s) 339
HindIII AAGCTT 1 cut(s) 1798
HinfI GANTC 9 cut(s) 298, 443, 872, 883, 1451, 1456, 1810, 1907, 2267
HpaII CCGG 1 cut(s) 1011
HphI GGTGA 4 cut(s) 452, 485, 1313, 1355
Hpy166II GTNNAC 9 cut(s) 339, 579, 802, 1613, 2116, 2302, 2321, 2393, 2415
Hpy8I GTNNAC 9 cut(s) 339, 579, 802, 1613, 2116, 2302, 2321, 2393, 2415
Hpy99I CGWCG 1 cut(s) 600
HpyAV CCTTC 9 cut(s) 99, 658, 1340, 1621, 1912, 2006, 2347, 2474, 2495
HpyCH4III ACNGT 4 cut(s) 60, 1200, 2120, 2494
HpyCH4IV ACGT 1 cut(s) 2056
HpyF10VI GCNNNNNNNGC 3 cut(s) 911, 1432, 2308
HpyF3I CTNAG 5 cut(s) 162, 716, 1660, 2372, 2400
HpySE526I ACGT 1 cut(s) 2056
HspAI GCGC 1 cut(s) 66
KpnI GGTACC 1 cut(s) 1536
LmnI GCTCC 2 cut(s) 902, 993
Lsp1109I GCAGC 6 cut(s) 300, 373, 939, 1733, 2163, 2320
LweI GCATC 2 cut(s) 699, 2124
MaeII ACGT 1 cut(s) 2056
MaeIII GTNAC 9 cut(s) 16, 54, 173, 346, 473, 858, 873, 890, 1194
MfeI CAATTG 1 cut(s) 582
MflI RGATCY 4 cut(s) 304, 938, 1165, 1933
MhlI GDGCHC 2 cut(s) 666, 2304
MluI ACGCGT 1 cut(s) 1855
MlyI GAGTC 3 cut(s) 307, 881, 1450
MmeI TCCRAC 1 cut(s) 1484
Mph1103I ATGCAT 1 cut(s) 2212
MslI CAYNNNNRTG 1 cut(s) 471
MspI CCGG 1 cut(s) 1011
MspR9I CCNGG 7 cut(s) 129, 269, 471, 544, 667, 1223, 1958
MunI CAATTG 1 cut(s) 582
MvaI CCWGG 7 cut(s) 129, 269, 471, 544, 667, 1223, 1958
MvnI CGCG 1 cut(s) 1857
MwoI GCNNNNNNNGC 3 cut(s) 911, 1432, 2308
NdeI CATATG 2 cut(s) 796, 831
NlaIV GGNNCC 2 cut(s) 664, 1534
NmuCI GTSAC 4 cut(s) 54, 473, 858, 873
NsiI ATGCAT 1 cut(s) 2212
NspI RCATGY 1 cut(s) 909
NspV TTCGAA 1 cut(s) 141
PagI TCATGA 1 cut(s) 1903
PasI CCCWGGG 1 cut(s) 666
PceI AGGCCT 1 cut(s) 2407
PfeI GAWTC 6 cut(s) 443, 883, 1451, 1810, 1907, 2267
PflMI CCANNNNNTGG 1 cut(s) 569
PfoI TCCNGGA 1 cut(s) 1956
PinAI ACCGGT 1 cut(s) 1010
PkrI GCNGC 6 cut(s) 290, 388, 929, 1748, 2153, 2335
PleI GAGTC 3 cut(s) 306, 880, 1450
PmaCI CACGTG 1 cut(s) 2057
PmlI CACGTG 1 cut(s) 2057
PpsI GAGTC 3 cut(s) 306, 880, 1450
Ppu21I YACGTR 1 cut(s) 2057
PshBI ATTAAT 1 cut(s) 633
PsiI TTATAA 1 cut(s) 1605
Psp6I CCWGG 7 cut(s) 127, 267, 469, 542, 665, 1221, 1956
PspCI CACGTG 1 cut(s) 2057
PspGI CCWGG 7 cut(s) 127, 267, 469, 542, 665, 1221, 1956
PspN4I GGNNCC 2 cut(s) 664, 1534
PspOMI GGGCCC 1 cut(s) 662
PspPI GGNCC 5 cut(s) 662, 663, 1008, 1595, 2390
PstI CTGCAG 1 cut(s) 391
PstNI CAGNNNCTG 1 cut(s) 386
PsuI RGATCY 4 cut(s) 304, 938, 1165, 1933
RsaI GTAC 7 cut(s) 869, 972, 1134, 1265, 1534, 2322, 2485
RsaNI GTAC 7 cut(s) 868, 971, 1133, 1264, 1533, 2321, 2484
RseI CAYNNNNRTG 1 cut(s) 471
SatI GCNGC 6 cut(s) 289, 387, 928, 1747, 2152, 2334
Sau96I GGNCC 5 cut(s) 662, 663, 1008, 1595, 2390
SchI GAGTC 3 cut(s) 307, 881, 1450
ScrFI CCNGG 7 cut(s) 129, 269, 471, 544, 667, 1223, 1958
SduI GDGCHC 2 cut(s) 666, 2304
SfaNI GCATC 2 cut(s) 699, 2124
SfcI CTRYAG 3 cut(s) 387, 1548, 2116
SfuI TTCGAA 1 cut(s) 141
SinI GGWCC 3 cut(s) 1008, 1595, 2390
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 1 cut(s) 863
SmoI CTYRAG 1 cut(s) 863
SpeI ACTAGT 2 cut(s) 374, 2462
SseBI AGGCCT 1 cut(s) 2407
SsiI CCGC 3 cut(s) 743, 2336, 2447
SspI AATATT 3 cut(s) 138, 1246, 1864
StuI AGGCCT 1 cut(s) 2407
StyD4I CCNGG 7 cut(s) 127, 267, 469, 542, 665, 1221, 1956
StyI CCWWGG 1 cut(s) 1296
TaaI ACNGT 4 cut(s) 60, 1200, 2120, 2494
TaiI ACGT 1 cut(s) 2059
TaqI TCGA 5 cut(s) 141, 709, 1454, 1480, 1818
TatI WGTACW 1 cut(s) 2320
TfiI GAWTC 6 cut(s) 443, 883, 1451, 1810, 1907, 2267
TscAI CASTG 4 cut(s) 1074, 1205, 2383, 2499
TseFI GTSAC 4 cut(s) 54, 473, 858, 873
TseI GCWGC 6 cut(s) 288, 386, 927, 1746, 2151, 2333
Tsp45I GTSAC 4 cut(s) 54, 473, 858, 873
TspRI CASTG 4 cut(s) 1074, 1205, 2383, 2499
Van91I CCANNNNNTGG 1 cut(s) 569
VneI GTGCAC 1 cut(s) 2300
VpaK11BI GGWCC 3 cut(s) 1008, 1595, 2390
VspI ATTAAT 1 cut(s) 633
XapI RAATTY 5 cut(s) 325, 680, 722, 1980, 2425
XbaI TCTAGA 2 cut(s) 935, 2026
XceI RCATGY 1 cut(s) 909
XmiI GTMKAC 4 cut(s) 578, 801, 1612, 2115
Zsp2I ATGCAT 1 cut(s) 2212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.