pycom05g24840

Protein CHUP1, chloroplastic-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
26323873 .. 26326140
2268 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g24840.2

Sequence Viewer

Length: 1635 bp
ATGAGCAGAAAAGCTTCCAACAGAAGAATTCCAAACACATTAATTACTTTGTTTTCATTAGAATTACTGAGTGACATTGTTGAGAAGATTAAAGCTGAGGCGTCTGTGCTAAGGCATACAAACGAAGAATTGTGCAAACAAGTTGAAGGTTTACAAACGAGTAGGTTGAATGAGGTTGAGGAGCTAGCATACTTGAGGTGGGTGAATTCATGTTTACGAAACGAGTTGCAGCACTCATCCTCCACCACAAATTCTGATAACACATTAAGTCCCACTTCGATTGAGAGGAGTAGAAAATCTGATGGAGCACTTTCATTTAGAAGCAGCAAGTACTTAGAATACAGTGGTGGAAAGCGATTGAACCTTATGAAGAAACTAAAGAACTGGCCAATTGCTGATGAGGTTTTGCCTAACTTAGAAAGCTCAGACGAGGAAGCAGGAAGTCCGAAAAGAAGACACTCAATAAGCGGATCAAGATTCTTTGCAGAAGACTTGGTGCAGACGAATAAGAGAAGGCAGTCTGATGGTTTTACGTGTGTCCAAGAAATGGAGAAGGATACAGAGACTGTAACCTCTCAAGAATATGATTTGGGAATCCTTCACGGATCACAGTTCTTCGGAAATTGTCACGAAATTAATAAACTTCCATCTTGCTTAGATGTTGAGAAAAGGGCCTTGAGAATTCCGAACCCCCCTCCAAGGCCTTCATGTTCCATTTCTAGTGCAACCAAAGTGGATCGTTCAGCACAAGTTCCACCACCGCCTCCACTTCCCCCACCGCCTCCTCCTAAGTTTGCAGCGAAGACTAGTCCCACAGGAGTGGTACAAAGAGCCCCACAAGTAGTTGAGTTTTATCATTCACTGATGAAGAGAGAGTCTAGGAAAGATTCTTCAAATGGAGGAGCTCCTGATGGCCCAGATGTTGCAAATGTTCGTAGTAGCATGATCGGAGAAATTGAGAACCGATCATCACATTTGCTTGCTATAAAGGCAGATGTGGAGACTCAAGGAGAATTCGTGAATTCGTTGATAAGAGAGGTGAACAATGCAGTTTATCAAAACATTGAAGATGTTGTGGCATTTGTGAAGTGGCTCGATGATGAACTTTCCTTTCTTGTGGATGAGAGGGCAGTCCTAAAGCACTTTGATTGGCCAGAAAAGAAAGCTGACACACTGCGTGAAGCAGCATTCAGCTACAGAGATCTCAAGAAACTGGAGTTTGAAGTGTCTTCTTACAAGGATGATAACAGACTGGCTTGTGACATTGCACTAAAGAAAATGGTTTCCTTGTCTGAGAAGATGGAGCGTACAGTTTATAACCTTTTCCGGACAAGGGAGTCATTGATGCGTAATTGCAGGGACTTCAAAATCCCCACAGACTGGATGCTTGACAATGGAATTTTAAGCAAGATAAAGTTTGGCTCAGTCAAGTTGGCAAAGATGTACATGACGAGGGTGGCTATGGAACTTCAGTTGAAGGCAGCAGCGGAGAAAGATCCTGCAATGGATTACATGCTGCTTCAGGGAGTGAGATTTGCTTTCAGAGTTCATCAGTTTGCAGGGGGATTCGATGCAGACACAATGCATGCGTTCGAGGAACTTCGCTGCCTTGCTCATCTTCTCAACAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

545

Amino Acids

61.69

Weight (kDa)

8.22

Isoelectric Point (pI)

57.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1317
AasI GACNNNNNNGTC 1 cut(s) 1336
AccB7I CCANNNNNTGG 2 cut(s) 547, 1380
AccIII TCCGGA 1 cut(s) 1326
AciI CCGC 4 cut(s) 468, 761, 779, 1487
AclWI GGATC 4 cut(s) 478, 613, 744, 1490
AcoI YGGCCR 2 cut(s) 386, 1151
AcsI RAATTY 7 cut(s) 27, 205, 250, 681, 1013, 1021, 1398
AcuI CTGAAG 2 cut(s) 1454, 1505
AcyI GRCGYC 1 cut(s) 101
AdeI CACNNNGTG 1 cut(s) 1178
AfaI GTAC 4 cut(s) 332, 825, 1309, 1445
AfiI CCNNNNNNNGG 4 cut(s) 547, 699, 1333, 1380
AflIII ACRYGT 1 cut(s) 533
AgsI TTSAA 8 cut(s) 146, 169, 361, 894, 1067, 1223, 1366, 1477
AhlI ACTAGT 1 cut(s) 806
AleI CACNNNNGTG 1 cut(s) 818
AluBI AGCT 7 cut(s) 14, 95, 184, 423, 905, 1166, 1194
AluI AGCT 7 cut(s) 14, 95, 184, 423, 905, 1166, 1194
Alw21I GWGCWC 2 cut(s) 310, 907
Alw26I GTCTC 2 cut(s) 557, 995
AlwI GGATC 4 cut(s) 478, 613, 744, 1490
AlwNI CAGNNNCTG 1 cut(s) 566
Aor13HI TCCGGA 1 cut(s) 1326
AoxI GGCC 5 cut(s) 386, 672, 701, 913, 1151
ApeKI GCWGC 8 cut(s) 229, 324, 797, 1184, 1481, 1484, 1516, 1605
ApoI RAATTY 7 cut(s) 27, 205, 250, 681, 1013, 1021, 1398
AseI ATTAAT 2 cut(s) 41, 636
Asp700I GAANNNNTTC 1 cut(s) 13
AspS9I GGNCC 2 cut(s) 672, 914
AsuHPI GGTGA 2 cut(s) 214, 1051
AsuNHI GCTAGC 1 cut(s) 184
BalI TGGCCA 2 cut(s) 388, 1153
BanII GRGCYC 2 cut(s) 835, 907
BbsI GAAGAC 4 cut(s) 460, 495, 809, 1221
Bbv12I GWGCWC 2 cut(s) 310, 907
BbvCI CCTCAGC 1 cut(s) 96
BbvI GCAGC 8 cut(s) 241, 336, 809, 1196, 1493, 1496, 1503, 1592
BccI CCATC 5 cut(s) 296, 518, 655, 905, 1294
BciVI GTATCC 1 cut(s) 550
BcoDI GTCTC 2 cut(s) 557, 995
BcuI ACTAGT 1 cut(s) 806
BfaI CTAG 4 cut(s) 185, 720, 807, 879
BfmI CTRYAG 1 cut(s) 1195
BfuI GTATCC 1 cut(s) 550
BglII AGATCT 1 cut(s) 1201
BisI GCNGC 8 cut(s) 230, 325, 798, 1185, 1482, 1485, 1517, 1606
BlsI GCNGC 8 cut(s) 231, 326, 799, 1186, 1483, 1486, 1518, 1607
BmcAI AGTACT 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 672, 914
BmsI GCATC 3 cut(s) 1335, 1374, 1561
BmtI GCTAGC 1 cut(s) 188
BpiI GAAGAC 4 cut(s) 460, 495, 809, 1221
BpmI CTGGAG 1 cut(s) 1235
Bpu10I CCTNAGC 2 cut(s) 96, 110
BpuEI CTTGAG 5 cut(s) 214, 561, 697, 990, 1190
BsaAI YACGTR 1 cut(s) 534
BsaHI GRCGYC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 698
BsaWI WCCGGW 1 cut(s) 1326
BsaXI ACNNNNNCTCC 4 cut(s) 224, 254, 1002, 1032
Bsc4I CCNNNNNNNGG 4 cut(s) 547, 699, 1333, 1380
Bse1I ACTGG 4 cut(s) 389, 1218, 1257, 1385
Bse3DI GCAATG 2 cut(s) 1263, 1509
BseAI TCCGGA 1 cut(s) 1326
BseDI CCNNGG 1 cut(s) 698
BseGI GGATG 4 cut(s) 236, 1126, 1246, 1389
BseLI CCNNNNNNNGG 4 cut(s) 547, 699, 1333, 1380
BseMI GCAATG 2 cut(s) 1263, 1509
BseMII CTCAG 5 cut(s) 59, 87, 438, 1284, 1437
BseNI ACTGG 4 cut(s) 389, 1218, 1257, 1385
BseRI GAGGAG 4 cut(s) 194, 301, 774, 915
BseXI GCAGC 8 cut(s) 241, 336, 809, 1196, 1493, 1496, 1503, 1592
BsgI GTGCAG 1 cut(s) 518
BshFI GGCC 5 cut(s) 388, 674, 703, 915, 1153
BsiHKAI GWGCWC 2 cut(s) 310, 907
BsiSI CCGG 1 cut(s) 1327
BslFI GGGAC 3 cut(s) 255, 795, 1373
BslI CCNNNNNNNGG 4 cut(s) 547, 699, 1333, 1380
BsmAI GTCTC 2 cut(s) 557, 995
BsmFI GGGAC 3 cut(s) 255, 795, 1373
BsmI GAATGC 1 cut(s) 1187
BsnI GGCC 5 cut(s) 388, 674, 703, 915, 1153
Bsp1286I GDGCHC 3 cut(s) 310, 835, 907
Bsp13I TCCGGA 1 cut(s) 1326
Bsp1407I TGTACA 1 cut(s) 1443
Bsp143I GATC 7 cut(s) 470, 605, 736, 945, 965, 1201, 1495
BspACI CCGC 4 cut(s) 468, 761, 779, 1487
BspANI GGCC 5 cut(s) 388, 674, 703, 915, 1153
BspCNI CTCAG 5 cut(s) 60, 88, 437, 1285, 1436
BspEI TCCGGA 1 cut(s) 1326
BspOI GCTAGC 1 cut(s) 188
BspPI GGATC 4 cut(s) 478, 613, 744, 1490
BsrDI GCAATG 2 cut(s) 1263, 1509
BsrGI TGTACA 1 cut(s) 1443
BsrI ACTGG 4 cut(s) 389, 1218, 1257, 1385
BssECI CCNNGG 1 cut(s) 698
BssMI GATC 7 cut(s) 470, 605, 736, 945, 965, 1201, 1495
BssNI GRCGYC 1 cut(s) 101
BssT1I CCWWGG 1 cut(s) 698
Bst4CI ACNGT 4 cut(s) 344, 568, 612, 1312
Bst6I CTCTTC 1 cut(s) 863
BstACI GRCGYC 1 cut(s) 101
BstAUI TGTACA 1 cut(s) 1443
BstBAI YACGTR 1 cut(s) 534
BstC8I GCNNGC 3 cut(s) 186, 981, 1587
BstF5I GGATG 4 cut(s) 236, 1126, 1246, 1389
BstKTI GATC 7 cut(s) 473, 608, 739, 948, 968, 1204, 1498
BstMAI GTCTC 2 cut(s) 557, 995
BstMBI GATC 7 cut(s) 470, 605, 736, 945, 965, 1201, 1495
BstMWI GCNNNNNNNGC 1 cut(s) 989
BstNSI RCATGY 2 cut(s) 1516, 1589
BstSFI CTRYAG 1 cut(s) 1195
BstV1I GCAGC 8 cut(s) 241, 336, 809, 1196, 1493, 1496, 1503, 1592
BstV2I GAAGAC 4 cut(s) 460, 495, 809, 1221
BstX2I RGATCY 2 cut(s) 1201, 1495
BstXI CCANNNNNNTGG 1 cut(s) 820
BstYI RGATCY 2 cut(s) 1201, 1495
BsuI GTATCC 1 cut(s) 550
BsuRI GGCC 5 cut(s) 388, 674, 703, 915, 1153
BtsCI GGATG 4 cut(s) 236, 1126, 1246, 1389
BtsI GCAGTG 1 cut(s) 1172
BtsIMutI CAGTG 3 cut(s) 349, 860, 1172
Cac8I GCNNGC 3 cut(s) 186, 981, 1587
CaiI CAGNNNCTG 1 cut(s) 566
Cfr13I GGNCC 2 cut(s) 672, 914
CseI GACGC 1 cut(s) 90
Csp6I GTAC 4 cut(s) 331, 824, 1308, 1444
CspCI CAANNNNNGTGG 4 cut(s) 262, 297, 714, 749
CviAII CATG 6 cut(s) 210, 708, 943, 1447, 1513, 1586
CviQI GTAC 4 cut(s) 331, 824, 1308, 1444
DpnI GATC 7 cut(s) 472, 607, 738, 947, 967, 1203, 1497
DpnII GATC 7 cut(s) 470, 605, 736, 945, 965, 1201, 1495
DraIII CACNNNGTG 1 cut(s) 1178
DrdI GACNNNNNNGTC 1 cut(s) 1336
DseDI GACNNNNNNGTC 1 cut(s) 1336
EaeI YGGCCR 2 cut(s) 386, 1151
Eam1104I CTCTTC 1 cut(s) 863
EarI CTCTTC 1 cut(s) 863
Ecl136II GAGCTC 1 cut(s) 905
Eco130I CCWWGG 1 cut(s) 698
Eco147I AGGCCT 1 cut(s) 703
Eco24I GRGCYC 2 cut(s) 835, 907
Eco53kI GAGCTC 1 cut(s) 905
Eco57I CTGAAG 2 cut(s) 1454, 1505
EcoICRI GAGCTC 1 cut(s) 905
EcoO109I RGGNCCY 1 cut(s) 672
EcoRI GAATTC 5 cut(s) 27, 205, 681, 1013, 1021
EcoT14I CCWWGG 1 cut(s) 698
EcoT22I ATGCAT 1 cut(s) 1587
EcoT38I GRGCYC 2 cut(s) 835, 907
ErhI CCWWGG 1 cut(s) 698
FaeI CATG 6 cut(s) 213, 711, 946, 1450, 1516, 1589
FalI AAGNNNNNCTT 2 cut(s) 259, 291
FaqI GGGAC 3 cut(s) 255, 795, 1373
FatI CATG 6 cut(s) 209, 707, 942, 1446, 1512, 1585
Fnu4HI GCNGC 8 cut(s) 230, 325, 798, 1185, 1482, 1485, 1517, 1606
FokI GGATG 4 cut(s) 223, 1133, 1253, 1396
FriOI GRGCYC 2 cut(s) 835, 907
Fsp4HI GCNGC 8 cut(s) 230, 325, 798, 1185, 1482, 1485, 1517, 1606
FspBI CTAG 4 cut(s) 185, 720, 807, 879
GluI GCNGC 8 cut(s) 230, 325, 798, 1185, 1482, 1485, 1517, 1606
GsuI CTGGAG 1 cut(s) 1235
HaeIII GGCC 5 cut(s) 388, 674, 703, 915, 1153
HapII CCGG 1 cut(s) 1327
HgaI GACGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 6 cut(s) 213, 711, 946, 1450, 1516, 1589
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 7 cut(s) 477, 594, 875, 887, 1003, 1337, 1566
HpaII CCGG 1 cut(s) 1327
HphI GGTGA 2 cut(s) 214, 1051
Hpy166II GTNNAC 3 cut(s) 152, 215, 1042
Hpy188III TCNNGA 7 cut(s) 474, 578, 629, 908, 1018, 1207, 1327
Hpy8I GTNNAC 3 cut(s) 152, 215, 1042
HpyAV CCTTC 6 cut(s) 140, 507, 547, 608, 714, 1471
HpyCH4III ACNGT 4 cut(s) 344, 568, 612, 1312
HpyCH4IV ACGT 1 cut(s) 533
HpyF10VI GCNNNNNNNGC 1 cut(s) 989
HpySE526I ACGT 1 cut(s) 533
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 6 cut(s) 213, 711, 946, 1450, 1516, 1589
Kpn2I TCCGGA 1 cut(s) 1326
Kzo9I GATC 7 cut(s) 470, 605, 736, 945, 965, 1201, 1495
LmnI GCTCC 5 cut(s) 181, 305, 902, 910, 1303
Lsp1109I GCAGC 8 cut(s) 241, 336, 809, 1196, 1493, 1496, 1503, 1592
LweI GCATC 3 cut(s) 1335, 1374, 1561
MaeI CTAG 4 cut(s) 185, 720, 807, 879
MaeII ACGT 1 cut(s) 533
MaeIII GTNAC 4 cut(s) 71, 568, 626, 1259
MalI GATC 7 cut(s) 472, 607, 738, 947, 967, 1203, 1497
MboI GATC 7 cut(s) 470, 605, 736, 945, 965, 1201, 1495
MfeI CAATTG 1 cut(s) 390
MflI RGATCY 2 cut(s) 1201, 1495
MhlI GDGCHC 3 cut(s) 310, 835, 907
MlsI TGGCCA 2 cut(s) 388, 1153
MluNI TGGCCA 2 cut(s) 388, 1153
MlyI GAGTC 3 cut(s) 884, 997, 1346
MmeI TCCRAC 1 cut(s) 42
Mox20I TGGCCA 2 cut(s) 388, 1153
Mph1103I ATGCAT 1 cut(s) 1587
MroI TCCGGA 1 cut(s) 1326
MroXI GAANNNNTTC 1 cut(s) 13
MscI TGGCCA 2 cut(s) 388, 1153
MseI TTAA 5 cut(s) 41, 90, 266, 636, 1403
MslI CAYNNNNRTG 1 cut(s) 818
Msp20I TGGCCA 2 cut(s) 388, 1153
MspA1I CMGCKG 1 cut(s) 1487
MspI CCGG 1 cut(s) 1327
MunI CAATTG 1 cut(s) 390
Mva1269I GAATGC 1 cut(s) 1187
MwoI GCNNNNNNNGC 1 cut(s) 989
NdeII GATC 7 cut(s) 470, 605, 736, 945, 965, 1201, 1495
NheI GCTAGC 1 cut(s) 184
NlaIII CATG 6 cut(s) 213, 711, 946, 1450, 1516, 1589
NmuCI GTSAC 3 cut(s) 71, 626, 1259
NsiI ATGCAT 1 cut(s) 1587
NspI RCATGY 2 cut(s) 1516, 1589
OliI CACNNNNGTG 1 cut(s) 818
PaeI GCATGC 1 cut(s) 1589
PceI AGGCCT 1 cut(s) 703
PctI GAATGC 1 cut(s) 1187
PdmI GAANNNNTTC 1 cut(s) 13
PfeI GAWTC 4 cut(s) 477, 594, 887, 1566
PflMI CCANNNNNTGG 2 cut(s) 547, 1380
PkrI GCNGC 8 cut(s) 231, 326, 799, 1186, 1483, 1486, 1518, 1607
PleI GAGTC 3 cut(s) 883, 997, 1345
PpsI GAGTC 3 cut(s) 883, 997, 1345
Ppu21I YACGTR 1 cut(s) 534
PshBI ATTAAT 2 cut(s) 41, 636
PsiI TTATAA 1 cut(s) 1317
Psp124BI GAGCTC 1 cut(s) 907
PspPI GGNCC 2 cut(s) 672, 914
PstNI CAGNNNCTG 1 cut(s) 566
PsuI RGATCY 2 cut(s) 1201, 1495
RsaI GTAC 4 cut(s) 332, 825, 1309, 1445
RsaNI GTAC 4 cut(s) 331, 824, 1308, 1444
RseI CAYNNNNRTG 1 cut(s) 818
SacI GAGCTC 1 cut(s) 907
SaqAI TTAA 5 cut(s) 41, 90, 266, 636, 1403
SatI GCNGC 8 cut(s) 230, 325, 798, 1185, 1482, 1485, 1517, 1606
Sau3AI GATC 7 cut(s) 470, 605, 736, 945, 965, 1201, 1495
Sau96I GGNCC 2 cut(s) 672, 914
ScaI AGTACT 1 cut(s) 332
SchI GAGTC 3 cut(s) 884, 997, 1346
SduI GDGCHC 3 cut(s) 310, 835, 907
SfaNI GCATC 3 cut(s) 1335, 1374, 1561
SfcI CTRYAG 1 cut(s) 1195
SmiMI CAYNNNNRTG 1 cut(s) 818
SmlI CTYRAG 5 cut(s) 193, 576, 676, 1005, 1205
SmoI CTYRAG 5 cut(s) 193, 576, 676, 1005, 1205
SpeI ACTAGT 1 cut(s) 806
SphI GCATGC 1 cut(s) 1589
SseBI AGGCCT 1 cut(s) 703
SsiI CCGC 4 cut(s) 468, 761, 779, 1487
SspMI CTAG 4 cut(s) 185, 720, 807, 879
SstI GAGCTC 1 cut(s) 907
StuI AGGCCT 1 cut(s) 703
StyI CCWWGG 1 cut(s) 698
TaaI ACNGT 4 cut(s) 344, 568, 612, 1312
TaiI ACGT 1 cut(s) 536
TaqI TCGA 4 cut(s) 278, 1095, 1569, 1593
TatI WGTACW 2 cut(s) 330, 1443
TfiI GAWTC 4 cut(s) 477, 594, 887, 1566
Tru1I TTAA 5 cut(s) 41, 90, 266, 636, 1403
Tru9I TTAA 5 cut(s) 41, 90, 266, 636, 1403
TscAI CASTG 3 cut(s) 349, 867, 1179
TseFI GTSAC 3 cut(s) 71, 626, 1259
TseI GCWGC 8 cut(s) 229, 324, 797, 1184, 1481, 1484, 1516, 1605
Tsp45I GTSAC 3 cut(s) 71, 626, 1259
TspDTI ATGAA 8 cut(s) 45, 198, 303, 383, 696, 881, 1116, 1538
TspGWI ACGGA 1 cut(s) 618
TspRI CASTG 3 cut(s) 349, 867, 1179
Van91I CCANNNNNTGG 2 cut(s) 547, 1380
VspI ATTAAT 2 cut(s) 41, 636
XapI RAATTY 7 cut(s) 27, 205, 250, 681, 1013, 1021, 1398
XceI RCATGY 2 cut(s) 1516, 1589
XmnI GAANNNNTTC 1 cut(s) 13
XspI CTAG 4 cut(s) 185, 720, 807, 879
ZrmI AGTACT 1 cut(s) 332
Zsp2I ATGCAT 1 cut(s) 1587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.