Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006644

Physical Location & Seq

Genomic Coordinates Reverse (-)

27416086 .. 27418733

Gene Structure 2648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26150.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGACTTTGACAATTTTCTCATGATAAACGGAGAATCAGAAGCAGTTAAAAGAGCATTATTTGCAGTTTCTGCAATTATGTACAAGTTTGCTCCGAAGGAAGAGATTTCTCTTGAGACATCGGTACCAGTGGCCCCACCAAGTATTATTATCCCATCAGATGTCCCTATTTATCAATCAGGTGGACTATATCAAAGTGGAGATCGTATCGTCTCTTCTAGATCTGTACCTCCAATCATAGGTGCTACACATTTACAGGATCTTCAGGGTTACACGGATACAGGGAACACATGGCCCCTGTATTCATCTGCCCTTCCTTTAGTTTCTGGTTTTGGCGTTGCCTCCCGATCTGAGGAGTTAATTGTGCGAGTACTCTGTCCCTTTGACAAGATTGGTCGTGTCATTGGCAAGGGTGGGGGCACCATTAAAAGCATAAGGCAGGGGAGTGGTGCTCGTATTGAGGTTGATGATACCAAGGACCGTGATGAGTGTATAATTAGTGTTACTGCAACAGAGTCACCCGATGATCTAAAATCTATGGCAGTGGAAGCTGTTCTTTTGCTGCAAGGGAAGATAAATGATGAAGATGATGACTCTGTTTCCATTCGACTTCTTGTTCCATCTAAAGTTATTGGTTGCATTATTGGAAAAAGTGGTTCCATTATAAATGAAATCCGAAAGAGAACAAAAGCTGATGTCCGTATTTCAAAAGCTGATAAGCCTAGGGGTGCTGATGCTAATGATGAACTTGTTGAGGTGGCAGGAGATCCCAGTAGTTTGAGGGATGCGCTTATTCAGATTGTTCTAAGACTCCGAGACGATGTCTTGAAAGATAGAGATGATGGTCTTAATACCTCTGGTGGTGCTGAATCTCTGTACTCGGGTGGCACTGGTCTCTCAATGCCACCTGTCCTGCCTTCTGTTCCCCCAGTTACTTCGATGGGTTATGATCAGAGGGCTGAAAGTGGAAGTGGCTTGGGCCTGCTTTCTTCTGGTAGCCTCTATGGATATGGATCTGTGTCGATGGGAGAAAATGGCTATGGATCCATGTCTTCGTATCCATCCAAGCTATATGGAGGGTCAGCGTTGCCACCCCCTTCAACACTTGAGATGCTAGTTCCTGCGAATGCAGTGGGTAAAGTGATGGGCAAAGGCGGGGCAAATATAGCCAATATTCGGAAGATATCGGGAGCAATGGTAGAGATCTCTGAGTCCAAATCTTCCCGGGGTGATCGTGTTGCACATATATCTGGCACACCTGAACAGAAGCGTACGGCAGAGAACTTGATTCAGGCATTTATAATGGCCCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

438

Amino Acids

46.08

Weight (kDa)

5.13

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46190 AT5G46190 AT5G46190 AT5G46190
fragaria_vesca	FvH4_3g05250 FvH4_3g05250 FvH4_3g05250 FvH4_3g05250 FvH4_3g05250
malus_domestica	MD05G1281400.v1.1 MD10G1260300.v1.1
prunus_persica	Prupe.4G083200_v2.0.a1 Prupe.4G083200_v2.0.a1 Prupe.4G083200_v2.0.a1
pyrus_communis	pycom05g26150 pycom10g21620
rosa_chinensis	RchiOBHm_Chr5g0014461
rosa_laevigata	RLG00000032112
rosa_multiflora	Rmu_sc0004194.1_g000002
rosa_roxburghii	Rroxscaffold_1G00062110
rosa_rugosa	Rorug05G0018400
rosa_samantha	Rh5AG113400 Rh5BG110100 Rh5CG121900 Rh5DG109200
rosa_wichuraiana	Rw5G009840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	665, 1301
Acc65I	GGTACC	1 cut(s)	124
AccB1I	GGYRCC	2 cut(s)	124, 419
AciI	CCGC	1 cut(s)	1155
AclWI	GGATC	5 cut(s)	267, 761, 1021, 1038, 1051
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	6 cut(s)	83, 126, 228, 372, 878, 1273
AfiI	CCNNNNNNNGG	3 cut(s)	239, 352, 1176
AgsI	TTSAA	3 cut(s)	708, 829, 1101
AluBI	AGCT	4 cut(s)	551, 692, 713, 1069
AluI	AGCT	4 cut(s)	551, 692, 713, 1069
Alw21I	GWGCWC	1 cut(s)	454
Alw26I	GTCTC	4 cut(s)	110, 217, 810, 899
AlwI	GGATC	5 cut(s)	267, 761, 1021, 1038, 1051
AlwNI	CAGNNNCTG	1 cut(s)	71
Ama87I	CYCGRG	2 cut(s)	880, 1224
AoxI	GGCC	4 cut(s)	132, 293, 979, 1305
ApeKI	GCWGC	1 cut(s)	562
Asp700I	GAANNNNTTC	1 cut(s)	552
Asp718I	GGTACC	1 cut(s)	124
AspA2I	CCTAGG	1 cut(s)	722
AspLEI	GCGC	1 cut(s)	790
AspS9I	GGNCC	5 cut(s)	133, 294, 478, 979, 1306
AsuC2I	CCSGG	2 cut(s)	1225, 1226
AsuHPI	GGTGA	2 cut(s)	510, 1241
AvaI	CYCGRG	2 cut(s)	880, 1224
AvaII	GGWCC	1 cut(s)	478
AvrII	CCTAGG	1 cut(s)	722
BaeGI	GKGCMC	1 cut(s)	422
BaeI	ACNNNNGTAYC	2 cut(s)	108, 141
BamHI	GGATCC	1 cut(s)	1043
BanI	GGYRCC	2 cut(s)	124, 419
BarI	GAAGNNNNNNTAC	2 cut(s)	199, 231
BbsI	GAAGAC	1 cut(s)	1044
Bbv12I	GWGCWC	1 cut(s)	454
BbvI	GCAGC	1 cut(s)	549
BccI	CCATC	7 cut(s)	163, 628, 836, 934, 1018, 1069, 1138
BceAI	ACGGC	1 cut(s)	1290
BciVI	GTATCC	2 cut(s)	271, 1068
BclI	TGATCA	1 cut(s)	949
BcnI	CCSGG	2 cut(s)	1225, 1226
BcoDI	GTCTC	4 cut(s)	110, 217, 810, 899
BfaI	CTAG	3 cut(s)	219, 723, 1115
BfuI	GTATCC	2 cut(s)	271, 1068
BglII	AGATCT	2 cut(s)	221, 1203
BisI	GCNGC	1 cut(s)	563
BlnI	CCTAGG	1 cut(s)	722
BlsI	GCNGC	1 cut(s)	564
BmcAI	AGTACT	1 cut(s)	372
Bme1390I	CCNGG	2 cut(s)	1225, 1226
Bme18I	GGWCC	1 cut(s)	478
BmeT110I	CYCGRG	2 cut(s)	880, 1224
BmgT120I	GGNCC	5 cut(s)	133, 294, 478, 979, 1306
BmiI	GGNNCC	7 cut(s)	126, 135, 296, 421, 658, 1045, 1308
BmrFI	CCNGG	2 cut(s)	1225, 1226
BmrI	ACTGGG	2 cut(s)	765, 923
BmsI	GCATC	3 cut(s)	724, 775, 1101
BmuI	ACTGGG	2 cut(s)	765, 923
BpiI	GAAGAC	1 cut(s)	1044
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
BpuEI	CTTGAG	2 cut(s)	134, 1127
BpuMI	CCSGG	2 cut(s)	1225, 1226
BsaBI	GATNNNNATC	1 cut(s)	1012
BsaI	GGTCTC	1 cut(s)	899
BsaJI	CCNNGG	4 cut(s)	474, 722, 1224, 1225
BsaXI	ACNNNNNCTCC	2 cut(s)	1182, 1212
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 352, 1176
Bse1I	ACTGG	4 cut(s)	128, 771, 895, 929
Bse3DI	GCAATG	1 cut(s)	1200
Bse8I	GATNNNNATC	1 cut(s)	1012
BseDI	CCNNGG	4 cut(s)	474, 722, 1224, 1225
BseGI	GGATG	2 cut(s)	790, 1061
BseJI	GATNNNNATC	1 cut(s)	1012
BseLI	CCNNNNNNNGG	3 cut(s)	239, 352, 1176
BseMI	GCAATG	1 cut(s)	1200
BseMII	CTCAG	2 cut(s)	342, 1200
BseNI	ACTGG	4 cut(s)	128, 771, 895, 929
BseRI	GAGGAG	1 cut(s)	368
BseSI	GKGCMC	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	549
BshFI	GGCC	4 cut(s)	134, 295, 981, 1307
BshNI	GGYRCC	2 cut(s)	124, 419
BsiHKAI	GWGCWC	1 cut(s)	454
BsiHKCI	CYCGRG	2 cut(s)	880, 1224
BsiSI	CCGG	1 cut(s)	1225
BsiWI	CGTACG	1 cut(s)	1271
BslFI	GGGAC	2 cut(s)	149, 363
BslI	CCNNNNNNNGG	3 cut(s)	239, 352, 1176
BsmAI	GTCTC	4 cut(s)	110, 217, 810, 899
BsmBI	CGTCTC	2 cut(s)	217, 810
BsmFI	GGGAC	2 cut(s)	149, 363
BsmI	GAATGC	1 cut(s)	1132
BsnI	GGCC	4 cut(s)	134, 295, 981, 1307
Bso31I	GGTCTC	1 cut(s)	899
BsoBI	CYCGRG	2 cut(s)	880, 1224
Bsp1286I	GDGCHC	2 cut(s)	422, 454
Bsp1407I	TGTACA	1 cut(s)	81
BspACI	CCGC	1 cut(s)	1155
BspANI	GGCC	4 cut(s)	134, 295, 981, 1307
BspCNI	CTCAG	2 cut(s)	343, 1201
BspHI	TCATGA	1 cut(s)	21
BspLI	GGNNCC	7 cut(s)	126, 135, 296, 421, 658, 1045, 1308
BspPI	GGATC	5 cut(s)	267, 761, 1021, 1038, 1051
BspT107I	GGYRCC	2 cut(s)	124, 419
BspTNI	GGTCTC	1 cut(s)	899
BsrDI	GCAATG	1 cut(s)	1200
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	4 cut(s)	128, 771, 895, 929
BssECI	CCNNGG	4 cut(s)	474, 722, 1224, 1225
BssT1I	CCWWGG	2 cut(s)	474, 722
Bst4CI	ACNGT	1 cut(s)	482
Bst6I	CTCTTC	2 cut(s)	96, 220
BstAPI	GCANNNNNTGC	2 cut(s)	62, 71
BstAUI	TGTACA	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	983
BstDEI	CTNAG	3 cut(s)	351, 806, 1209
BstF5I	GGATG	2 cut(s)	790, 1061
BstHHI	GCGC	1 cut(s)	790
BstMAI	GTCTC	4 cut(s)	110, 217, 810, 899
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 71, 548, 1166
BstSCI	CCNGG	2 cut(s)	1223, 1224
BstSLI	GKGCMC	1 cut(s)	422
BstV1I	GCAGC	1 cut(s)	549
BstV2I	GAAGAC	1 cut(s)	1044
BstX2I	RGATCY	6 cut(s)	221, 259, 766, 1013, 1043, 1203
BstYI	RGATCY	6 cut(s)	221, 259, 766, 1013, 1043, 1203
BsuI	GTATCC	2 cut(s)	271, 1068
BsuRI	GGCC	4 cut(s)	134, 295, 981, 1307
BtsCI	GGATG	2 cut(s)	790, 1061
BtsI	GCAGTG	2 cut(s)	549, 1137
BtsIMutI	CAGTG	4 cut(s)	135, 549, 888, 1137
Cac8I	GCNNGC	1 cut(s)	983
CaiI	CAGNNNCTG	1 cut(s)	71
CciI	TCATGA	1 cut(s)	21
CfoI	GCGC	1 cut(s)	790
Cfr13I	GGNCC	5 cut(s)	133, 294, 478, 979, 1306
Cfr9I	CCCGGG	1 cut(s)	1224
Csp6I	GTAC	6 cut(s)	82, 125, 227, 371, 877, 1272
CviAII	CATG	3 cut(s)	22, 291, 1048
CviQI	GTAC	6 cut(s)	82, 125, 227, 371, 877, 1272
DdeI	CTNAG	3 cut(s)	351, 806, 1209
Eam1104I	CTCTTC	2 cut(s)	96, 220
EarI	CTCTTC	2 cut(s)	96, 220
Eco130I	CCWWGG	2 cut(s)	474, 722
Eco31I	GGTCTC	1 cut(s)	899
Eco32I	GATATC	1 cut(s)	1185
Eco47I	GGWCC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	248
Eco88I	CYCGRG	2 cut(s)	880, 1224
EcoRV	GATATC	1 cut(s)	1185
EcoT14I	CCWWGG	2 cut(s)	474, 722
ErhI	CCWWGG	2 cut(s)	474, 722
Esp3I	CGTCTC	2 cut(s)	217, 810
FaeI	CATG	3 cut(s)	25, 294, 1051
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
FaqI	GGGAC	2 cut(s)	149, 363
FatI	CATG	3 cut(s)	21, 290, 1047
FauI	CCCGC	1 cut(s)	1148
FbaI	TGATCA	1 cut(s)	949
Fnu4HI	GCNGC	1 cut(s)	563
FokI	GGATG	2 cut(s)	797, 1048
Fsp4HI	GCNGC	1 cut(s)	563
FspBI	CTAG	3 cut(s)	219, 723, 1115
GlaI	GCGC	1 cut(s)	789
GluI	GCNGC	1 cut(s)	563
HaeIII	GGCC	4 cut(s)	134, 295, 981, 1307
HapII	CCGG	1 cut(s)	1225
HhaI	GCGC	1 cut(s)	790
Hin1II	CATG	3 cut(s)	25, 294, 1051
Hin6I	GCGC	1 cut(s)	788
HinP1I	GCGC	1 cut(s)	788
HinfI	GANTC	7 cut(s)	35, 515, 593, 810, 869, 1211, 1288
HpaII	CCGG	1 cut(s)	1225
HphI	GGTGA	2 cut(s)	510, 1241
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188III	TCNNGA	6 cut(s)	22, 113, 219, 345, 826, 1188
Hpy8I	GTNNAC	1 cut(s)	185
HpyAV	CCTTC	4 cut(s)	91, 323, 927, 1107
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4V	TGCA	7 cut(s)	65, 74, 509, 565, 639, 1130, 1241
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 71, 548, 1166
HpyF3I	CTNAG	3 cut(s)	351, 806, 1209
Hsp92II	CATG	3 cut(s)	25, 294, 1051
HspAI	GCGC	1 cut(s)	788
KpnI	GGTACC	1 cut(s)	128
Ksp22I	TGATCA	1 cut(s)	949
LmnI	GCTCC	2 cut(s)	97, 1190
Lsp1109I	GCAGC	1 cut(s)	549
LweI	GCATC	3 cut(s)	724, 775, 1101
MaeI	CTAG	3 cut(s)	219, 723, 1115
MaeIII	GTNAC	4 cut(s)	269, 502, 516, 931
MboII	GAAGA	9 cut(s)	113, 207, 254, 583, 596, 981, 1044, 1192, 1212
MflI	RGATCY	6 cut(s)	221, 259, 766, 1013, 1043, 1203
MhlI	GDGCHC	2 cut(s)	422, 454
MluCI	AATT	4 cut(s)	13, 75, 360, 495
MlyI	GAGTC	4 cut(s)	524, 587, 804, 1220
MroXI	GAANNNNTTC	1 cut(s)	552
MseI	TTAA	4 cut(s)	48, 359, 426, 849
MspI	CCGG	1 cut(s)	1225
MspR9I	CCNGG	2 cut(s)	1225, 1226
Mva1269I	GAATGC	1 cut(s)	1132
MwoI	GCNNNNNNNGC	4 cut(s)	62, 71, 548, 1166
NciI	CCSGG	2 cut(s)	1225, 1226
NlaIII	CATG	3 cut(s)	25, 294, 1051
NlaIV	GGNNCC	7 cut(s)	126, 135, 296, 421, 658, 1045, 1308
NmuCI	GTSAC	1 cut(s)	516
PagI	TCATGA	1 cut(s)	21
PctI	GAATGC	1 cut(s)	1132
PdmI	GAANNNNTTC	1 cut(s)	552
PfeI	GAWTC	3 cut(s)	35, 869, 1288
Pfl23II	CGTACG	1 cut(s)	1271
PflFI	GACNNNGTC	1 cut(s)	821
PkrI	GCNGC	1 cut(s)	564
PleI	GAGTC	4 cut(s)	523, 587, 804, 1219
PpsI	GAGTC	4 cut(s)	523, 587, 804, 1219
PsiI	TTATAA	2 cut(s)	665, 1301
PspLI	CGTACG	1 cut(s)	1271
PspN4I	GGNNCC	7 cut(s)	126, 135, 296, 421, 658, 1045, 1308
PspPI	GGNCC	5 cut(s)	133, 294, 478, 979, 1306
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	6 cut(s)	221, 259, 766, 1013, 1043, 1203
PsyI	GACNNNGTC	1 cut(s)	821
RsaI	GTAC	6 cut(s)	83, 126, 228, 372, 878, 1273
RsaNI	GTAC	6 cut(s)	82, 125, 227, 371, 877, 1272
SaqAI	TTAA	4 cut(s)	48, 359, 426, 849
SatI	GCNGC	1 cut(s)	563
Sau96I	GGNCC	5 cut(s)	133, 294, 478, 979, 1306
ScaI	AGTACT	1 cut(s)	372
SchI	GAGTC	4 cut(s)	524, 587, 804, 1220
ScrFI	CCNGG	2 cut(s)	1225, 1226
SduI	GDGCHC	2 cut(s)	422, 454
SfaNI	GCATC	3 cut(s)	724, 775, 1101
SinI	GGWCC	1 cut(s)	478
SmaI	CCCGGG	1 cut(s)	1226
SmlI	CTYRAG	2 cut(s)	113, 1106
SmoI	CTYRAG	2 cut(s)	113, 1106
Sse9I	AATT	4 cut(s)	13, 75, 360, 495
SsiI	CCGC	1 cut(s)	1155
SspI	AATATT	1 cut(s)	1174
SspMI	CTAG	3 cut(s)	219, 723, 1115
StyD4I	CCNGG	2 cut(s)	1223, 1224
StyI	CCWWGG	2 cut(s)	474, 722
TaaI	ACNGT	1 cut(s)	482
TaqI	TCGA	3 cut(s)	607, 938, 1022
TasI	AATT	4 cut(s)	13, 75, 360, 495
TatI	WGTACW	3 cut(s)	81, 370, 876
TfiI	GAWTC	3 cut(s)	35, 869, 1288
Tru1I	TTAA	4 cut(s)	48, 359, 426, 849
Tru9I	TTAA	4 cut(s)	48, 359, 426, 849
TscAI	CASTG	4 cut(s)	135, 549, 895, 1137
TseFI	GTSAC	1 cut(s)	516
TseI	GCWGC	1 cut(s)	562
Tsp45I	GTSAC	1 cut(s)	516
TspDTI	ATGAA	4 cut(s)	294, 597, 684, 759
TspGWI	ACGGA	3 cut(s)	45, 290, 689
TspMI	CCCGGG	1 cut(s)	1224
TspRI	CASTG	4 cut(s)	135, 549, 895, 1137
Tth111I	GACNNNGTC	1 cut(s)	821
VpaK11BI	GGWCC	1 cut(s)	478
XbaI	TCTAGA	1 cut(s)	218
XmaI	CCCGGG	1 cut(s)	1224
XmaJI	CCTAGG	1 cut(s)	722
XmnI	GAANNNNTTC	1 cut(s)	552
XspI	CTAG	3 cut(s)	219, 723, 1115
ZrmI	AGTACT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.