Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006644

Physical Location & Seq

Genomic Coordinates Forward (+)

10082921 .. 10089427

Gene Structure 6507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG121900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1917 bp

ATGGGAGAGACGGGGAAGCGGTATCGTTCGCAGAGGGACCGAGATTACGATGGCGGGAACAAGAACCAGAAGAGGCGGGTGAATGACAGAGAAGATAGGGGCGGTGGTGGTGGTGGTGGTGGAGGCGCTGGCGGTGGCGACGAGGTTGTTGTGTACAGGATTCTATGCCCTGTTGGGGTCATTGGAAGCGTGATTGGGAAGAGTGGTAAAGTGATCAATTCGATTAGACAGGATAGTAGAGCTAAGGTGAAGGTTGTGGATCCATTTCCGGGTGCGAAAGATAGGGTTATAACTATTTATAGCTATGTTAGGGACAAGGAGGAGGTTGATGTTGATGATGAGTTCAGTAGTGATAGGGAGCCCTTGTGTGCTGCACAGGATGCTCTATTTAAAGTGCATTCTGCTATTTCGAATGCGCTGGCTGCTGCTGGAGATTCTGATAAGAGGAGGAGGGATAAGGAAGAGTGTCAGATTCTTGTCCCGGCTAGCCAGTGTGCTAATGTGATAGGTAAGGCCGGGTCGACGATAAAGAAACTGAGGAGCAGGACGAGGACAAATATTAAGGTCACTGCAAAAGATGCCTCCGAACCAACACATTCATGTGCAATGGACTTTGACAACTTTGTTATGATAAATGGAGAATCAGAAGCAGTGAAAAAAGCATTATTTGCAGTTTCTGCAATCATATACAAGTTTCCTGCACGAGAACAGATTCCTCTTGATACAACAGTACCGGAAGCCCCTCCAAGCATAATAATTCCATCGGATATGCCGATTTATCAACCGGGTGGATTATATAACCCTGCAGATCCTATTATTCCTTCTAGATCCCTACCTCCACTCCTAAATGCTACACATGTACAGGATCTTCATGGTTTTGCGGATACAGGGAATGCATGGCCCATATATTCATCTGCTCTTCCTTTAGTTTCTGGTTTCAGTGTGGCATCGCGATCTGAGGAGTTAGTTGTGAGAGTACTATGCCCTTCTGACAAGATTGGTCGTGTCATTGGAAAGGGTGGGGGTACCATTAAAAGCATAAGGCAGACTAGTGGTGCTCGAGTTGAGGTTGACGATACCAAGGATGACCGTGATGAGTGCATAATCACTGTTACTGCAACAGAGTCACCGGATGATCTGAAGTCCATGGCAGTTGAAGCTGTTCTATTGTTGCAAGGGAAGATAAATGATGAAGATGTTGACAATGTTTCTATACGGCTTCTTGTTCCGTCTAAAGTTATTGGTTGTATTATTGGAAAAAATGGTTCAATTATAAATGAAATACGGAAGAGAACAAAAGCTGACATCCATATTTCTAAAGCTGATAAGCCTAAATGTGCTGACGCTAATGATGAACTTGTTGAGGTGGCAGGTGATCTCAGTAGTTTGAGAGATGCACTTATTCAGATTGTTCTAAGGCTCCGAGACGATGTCTTGAAAGATAGAGATGGTGGTCATAACCCTGCTGTTGGTGCGGAGTCGGTATACCCGGGTAGCACTGGTCTCCCTTTGCCATCTGTGCTGCCTTCAGTTCCCCAGGTTGCTCCCTTAGGTTTTGATCAGAGGGCTGAAAGTGCAAGTGGCTTGGGGATGCTTTCTTCTAGTGGCCTGTTTGGATATGGATCTCTGCCGATGGGGGAAGATGGCTACAGATCAGTGTCTTCTTATTCATCCAAGCTATATGGAGGATTGCCACCCCCTTCAACACTTGAGATGCTCATTCCTGCTAATGCAGCGGGTAAGGTGATTGGCAAAGGAGGGGCAAATATAGCTAACATTCGGAAGATATCAGGAGCAATGATAGAGATTTCCGAGTCCAAATCTTCACGGGGTGATCGTATTGCTCATATATCTGGCACAGTTGAACAGAAGCGGACAGCAGAGAACTTGATCCAGGCATTTATAATGGCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

638

Amino Acids

67.91

Weight (kDa)

6.7

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	52 - 101	3.2e-11	KH domain
KH_1	PF00013	156 - 225	1.5e-12	KH domain
KH_1	PF00013	324 - 375	1.1e-14	KH domain
KH_1	PF00013	405 - 470	2.5e-14	KH domain
KH_1	PF00013	569 - 632	1.9e-15	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46190 AT5G46190 AT5G46190 AT5G46190
fragaria_vesca	FvH4_3g05250 FvH4_3g05250 FvH4_3g05250 FvH4_3g05250 FvH4_3g05250
malus_domestica	MD05G1281400.v1.1 MD10G1260300.v1.1
prunus_persica	Prupe.4G083200_v2.0.a1 Prupe.4G083200_v2.0.a1 Prupe.4G083200_v2.0.a1
pyrus_communis	pycom05g26150 pycom10g21620
rosa_chinensis	RchiOBHm_Chr5g0014461
rosa_laevigata	RLG00000032112
rosa_multiflora	Rmu_sc0004194.1_g000002
rosa_roxburghii	Rroxscaffold_1G00062110
rosa_rugosa	Rorug05G0018400
rosa_samantha	Rh5AG113400 Rh5BG110100 Rh5CG121900 Rh5DG109200
rosa_wichuraiana	Rw5G009840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	290, 1274, 1904
AarI	CACCTGC	1 cut(s)	1361
Acc36I	ACCTGC	1 cut(s)	1361
Acc65I	GGTACC	1 cut(s)	1025
AccB1I	GGYRCC	1 cut(s)	1025
AccI	GTMKAC	2 cut(s)	521, 1485
AccII	CGCG	1 cut(s)	952
AciI	CCGC	9 cut(s)	19, 54, 76, 102, 132, 881, 1475, 1736, 1873
AclWI	GGATC	7 cut(s)	254, 267, 803, 822, 873, 1630, 1885
AcoI	YGGCCR	1 cut(s)	1908
AcuI	CTGAAG	2 cut(s)	1160, 1512
AdeI	CACNNNGTG	1 cut(s)	1832
AfaI	GTAC	5 cut(s)	155, 732, 861, 978, 1027
AfiI	CCNNNNNNNGG	3 cut(s)	175, 269, 1469
AflIII	ACRYGT	1 cut(s)	856
AgsI	TTSAA	5 cut(s)	1157, 1269, 1438, 1704, 1865
AhlI	ACTAGT	1 cut(s)	1049
AjnI	CCWGG	2 cut(s)	1536, 1893
AluBI	AGCT	7 cut(s)	242, 303, 1160, 1301, 1322, 1678, 1772
AluI	AGCT	7 cut(s)	242, 303, 1160, 1301, 1322, 1678, 1772
Alw21I	GWGCWC	1 cut(s)	1060
Alw26I	GTCTC	3 cut(s)	2, 1419, 1508
AlwI	GGATC	7 cut(s)	254, 267, 803, 822, 873, 1630, 1885
AlwNI	CAGNNNCTG	1 cut(s)	677
Ama87I	CYCGRG	2 cut(s)	1059, 1489
AoxI	GGCC	4 cut(s)	513, 899, 1606, 1908
ApeKI	GCWGC	5 cut(s)	371, 422, 425, 1522, 1733
Asp700I	GAANNNNTTC	2 cut(s)	711, 1161
Asp718I	GGTACC	1 cut(s)	1025
AspLEI	GCGC	2 cut(s)	128, 418
AspS9I	GGNCC	2 cut(s)	37, 900
AsuC2I	CCSGG	6 cut(s)	270, 482, 517, 786, 1490, 1491
AsuHPI	GGTGA	6 cut(s)	91, 259, 1119, 1385, 1756, 1844
AsuII	TTCGAA	1 cut(s)	410
AsuNHI	GCTAGC	1 cut(s)	485
AvaI	CYCGRG	2 cut(s)	1059, 1489
AvaII	GGWCC	1 cut(s)	37
AxyI	CCTNAGG	1 cut(s)	1549
BaeI	ACNNNNGTAYC	4 cut(s)	714, 714, 747, 747
BalI	TGGCCA	1 cut(s)	1910
BamHI	GGATCC	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	1025
BanII	GRGCYC	1 cut(s)	363
BarI	GAAGNNNNNNTAC	2 cut(s)	852, 884
BauI	CACGAG	1 cut(s)	702
BbsI	GAAGAC	1 cut(s)	1653
Bbv12I	GWGCWC	1 cut(s)	1060
BbvI	GCAGC	5 cut(s)	358, 409, 412, 1509, 1745
BccI	CCATC	6 cut(s)	44, 769, 1442, 1522, 1627, 1637
BceAI	ACGGC	1 cut(s)	1232
BciT130I	CCWGG	2 cut(s)	1538, 1895
BciVI	GTATCC	1 cut(s)	877
BclI	TGATCA	2 cut(s)	213, 1558
BcnI	CCSGG	6 cut(s)	270, 482, 517, 786, 1490, 1491
BcoDI	GTCTC	3 cut(s)	2, 1419, 1508
BcuI	ACTAGT	1 cut(s)	1049
BfaI	CTAG	4 cut(s)	486, 825, 1050, 1602
BfmI	CTRYAG	2 cut(s)	804, 1648
BfoI	RGCGCY	1 cut(s)	129
BfuAI	ACCTGC	1 cut(s)	1361
BfuI	GTATCC	1 cut(s)	877
BisI	GCNGC	5 cut(s)	372, 423, 426, 1523, 1734
BlsI	GCNGC	5 cut(s)	373, 424, 427, 1524, 1735
BmcAI	AGTACT	1 cut(s)	978
Bme1390I	CCNGG	8 cut(s)	270, 482, 517, 786, 1490, 1491, 1538, 1895
Bme18I	GGWCC	1 cut(s)	37
BmeT110I	CYCGRG	2 cut(s)	1059, 1489
BmgT120I	GGNCC	2 cut(s)	37, 900
BmiI	GGNNCC	5 cut(s)	38, 261, 360, 1027, 1421
BmrFI	CCNGG	8 cut(s)	270, 482, 517, 786, 1490, 1491, 1538, 1895
BmsI	GCATC	6 cut(s)	370, 568, 956, 1384, 1581, 1704
BmtI	GCTAGC	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	1653
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	1 cut(s)	243
Bpu14I	TTCGAA	1 cut(s)	410
BpuEI	CTTGAG	1 cut(s)	1730
BpuMI	CCSGG	6 cut(s)	270, 482, 517, 786, 1490, 1491
BsaBI	GATNNNNATC	1 cut(s)	1621
BsaI	GGTCTC	1 cut(s)	1508
BsaJI	CCNNGG	4 cut(s)	1080, 1146, 1489, 1536
BsaWI	WCCGGW	2 cut(s)	733, 1129
BsaXI	ACNNNNNCTCC	4 cut(s)	350, 380, 825, 855
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 269, 1469
Bse1I	ACTGG	2 cut(s)	490, 1504
Bse21I	CCTNAGG	1 cut(s)	1549
Bse3DI	GCAATG	2 cut(s)	612, 1803
Bse8I	GATNNNNATC	1 cut(s)	1621
BseBI	CCWGG	2 cut(s)	1538, 1895
BseDI	CCNNGG	4 cut(s)	1080, 1146, 1489, 1536
BseGI	GGATG	6 cut(s)	385, 1090, 1138, 1305, 1596, 1670
BseJI	GATNNNNATC	1 cut(s)	1621
BseLI	CCNNNNNNNGG	3 cut(s)	175, 269, 1469
BseMI	GCAATG	2 cut(s)	612, 1803
BseMII	CTCAG	3 cut(s)	527, 948, 1393
BseNI	ACTGG	2 cut(s)	490, 1504
BseRI	GAGGAG	5 cut(s)	335, 460, 463, 553, 974
BseXI	GCAGC	5 cut(s)	358, 409, 412, 1509, 1745
BsgI	GTGCAG	2 cut(s)	357, 684
Bsh1236I	CGCG	1 cut(s)	952
BshFI	GGCC	4 cut(s)	515, 901, 1608, 1910
BshNI	GGYRCC	1 cut(s)	1025
BsiHKAI	GWGCWC	1 cut(s)	1060
BsiHKCI	CYCGRG	2 cut(s)	1059, 1489
BsiSI	CCGG	7 cut(s)	269, 482, 516, 734, 785, 1130, 1490
BslFI	GGGAC	3 cut(s)	50, 326, 464
BslI	CCNNNNNNNGG	3 cut(s)	175, 269, 1469
BsmAI	GTCTC	3 cut(s)	2, 1419, 1508
BsmBI	CGTCTC	2 cut(s)	2, 1419
BsmFI	GGGAC	3 cut(s)	50, 326, 464
BsmI	GAATGC	3 cut(s)	397, 418, 898
BsnI	GGCC	4 cut(s)	515, 901, 1608, 1910
Bso31I	GGTCTC	1 cut(s)	1508
BsoBI	CYCGRG	2 cut(s)	1059, 1489
Bsp119I	TTCGAA	1 cut(s)	410
Bsp1286I	GDGCHC	2 cut(s)	363, 1060
Bsp1407I	TGTACA	2 cut(s)	153, 859
Bsp19I	CCATGG	1 cut(s)	1146
Bsp68I	TCGCGA	1 cut(s)	952
BspACI	CCGC	9 cut(s)	19, 54, 76, 102, 132, 881, 1475, 1736, 1873
BspANI	GGCC	4 cut(s)	515, 901, 1608, 1910
BspCNI	CTCAG	3 cut(s)	528, 949, 1392
BspFNI	CGCG	1 cut(s)	952
BspLI	GGNNCC	5 cut(s)	38, 261, 360, 1027, 1421
BspMAI	CTGCAG	1 cut(s)	808
BspMI	ACCTGC	1 cut(s)	1361
BspOI	GCTAGC	1 cut(s)	489
BspPI	GGATC	7 cut(s)	254, 267, 803, 822, 873, 1630, 1885
BspQI	GCTCTTC	1 cut(s)	924
BspT104I	TTCGAA	1 cut(s)	410
BspT107I	GGYRCC	1 cut(s)	1025
BspTNI	GGTCTC	1 cut(s)	1508
BsrDI	GCAATG	2 cut(s)	612, 1803
BsrGI	TGTACA	2 cut(s)	153, 859
BsrI	ACTGG	2 cut(s)	490, 1504
BssECI	CCNNGG	4 cut(s)	1080, 1146, 1489, 1536
BssNAI	GTATAC	1 cut(s)	1486
BssSI	CACGAG	1 cut(s)	702
BssT1I	CCWWGG	2 cut(s)	1080, 1146
Bst1107I	GTATAC	1 cut(s)	1486
Bst2BI	CACGAG	1 cut(s)	702
Bst2UI	CCWGG	2 cut(s)	1538, 1895
Bst4CI	ACNGT	4 cut(s)	730, 1091, 1111, 1861
Bst6I	CTCTTC	5 cut(s)	65, 194, 456, 924, 1283
BstAPI	GCANNNNNTGC	4 cut(s)	380, 578, 668, 677
BstAUI	TGTACA	2 cut(s)	153, 859
BstBI	TTCGAA	1 cut(s)	410
BstC8I	GCNNGC	3 cut(s)	130, 420, 487
BstDEI	CTNAG	6 cut(s)	243, 536, 957, 1379, 1415, 1549
BstDSI	CCRYGG	1 cut(s)	1146
BstF5I	GGATG	6 cut(s)	385, 1090, 1138, 1305, 1596, 1670
BstFNI	CGCG	1 cut(s)	952
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	2 cut(s)	128, 418
BstMAI	GTCTC	3 cut(s)	2, 1419, 1508
BstNI	CCWGG	2 cut(s)	1538, 1895
BstNSI	RCATGY	1 cut(s)	860
BstSCI	CCNGG	8 cut(s)	268, 480, 515, 784, 1488, 1489, 1536, 1893
BstSFI	CTRYAG	2 cut(s)	804, 1648
BstUI	CGCG	1 cut(s)	952
BstV1I	GCAGC	5 cut(s)	358, 409, 412, 1509, 1745
BstV2I	GAAGAC	1 cut(s)	1653
BstX2I	RGATCY	5 cut(s)	259, 808, 827, 865, 1622
BstYI	RGATCY	5 cut(s)	259, 808, 827, 865, 1622
BstZ17I	GTATAC	1 cut(s)	1486
Bsu36I	CCTNAGG	1 cut(s)	1549
BsuI	GTATCC	1 cut(s)	877
BsuRI	GGCC	4 cut(s)	515, 901, 1608, 1910
BtgI	CCRYGG	1 cut(s)	1146
BtgZI	GCGATG	1 cut(s)	933
BtsCI	GGATG	6 cut(s)	385, 1090, 1138, 1305, 1596, 1670
BtsI	GCAGTG	2 cut(s)	567, 657
BtsIMutI	CAGTG	7 cut(s)	497, 567, 657, 946, 1107, 1497, 1662
BtuMI	TCGCGA	1 cut(s)	952
BveI	ACCTGC	1 cut(s)	1361
Cac8I	GCNNGC	3 cut(s)	130, 420, 487
CaiI	CAGNNNCTG	1 cut(s)	677
CfoI	GCGC	2 cut(s)	128, 418
Cfr13I	GGNCC	2 cut(s)	37, 900
Cfr9I	CCCGGG	1 cut(s)	1489
CseI	GACGC	1 cut(s)	1352
Csp6I	GTAC	5 cut(s)	154, 731, 860, 977, 1026
CviAII	CATG	5 cut(s)	600, 857, 872, 897, 1147
CviQI	GTAC	5 cut(s)	154, 731, 860, 977, 1026
DdeI	CTNAG	6 cut(s)	243, 536, 957, 1379, 1415, 1549
DraI	TTTAAA	1 cut(s)	391
DraIII	CACNNNGTG	1 cut(s)	1832
EaeI	YGGCCR	1 cut(s)	1908
Eam1104I	CTCTTC	5 cut(s)	65, 194, 456, 924, 1283
EarI	CTCTTC	5 cut(s)	65, 194, 456, 924, 1283
Eco130I	CCWWGG	2 cut(s)	1080, 1146
Eco24I	GRGCYC	1 cut(s)	363
Eco31I	GGTCTC	1 cut(s)	1508
Eco32I	GATATC	1 cut(s)	1788
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	2 cut(s)	1160, 1512
Eco81I	CCTNAGG	1 cut(s)	1549
Eco88I	CYCGRG	2 cut(s)	1059, 1489
EcoRII	CCWGG	2 cut(s)	1536, 1893
EcoRV	GATATC	1 cut(s)	1788
EcoT14I	CCWWGG	2 cut(s)	1080, 1146
EcoT22I	ATGCAT	1 cut(s)	898
EcoT38I	GRGCYC	1 cut(s)	363
ErhI	CCWWGG	2 cut(s)	1080, 1146
Esp3I	CGTCTC	2 cut(s)	2, 1419
FaeI	CATG	5 cut(s)	603, 860, 875, 900, 1150
FaqI	GGGAC	3 cut(s)	50, 326, 464
FatI	CATG	5 cut(s)	599, 856, 871, 896, 1146
FauI	CCCGC	3 cut(s)	47, 69, 1729
FbaI	TGATCA	2 cut(s)	213, 1558
FblI	GTMKAC	2 cut(s)	521, 1485
Fnu4HI	GCNGC	5 cut(s)	372, 423, 426, 1523, 1734
FokI	GGATG	6 cut(s)	392, 1097, 1145, 1292, 1603, 1657
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	5 cut(s)	372, 423, 426, 1523, 1734
FspBI	CTAG	4 cut(s)	486, 825, 1050, 1602
GlaI	GCGC	2 cut(s)	127, 417
GluI	GCNGC	5 cut(s)	372, 423, 426, 1523, 1734
GsuI	CTGGAG	1 cut(s)	450
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	4 cut(s)	515, 901, 1608, 1910
HapII	CCGG	7 cut(s)	269, 482, 516, 734, 785, 1130, 1490
HgaI	GACGC	1 cut(s)	1352
HhaI	GCGC	2 cut(s)	128, 418
Hin1II	CATG	5 cut(s)	603, 860, 875, 900, 1150
Hin6I	GCGC	2 cut(s)	126, 416
HinP1I	GCGC	2 cut(s)	126, 416
HincII	GTYRAC	3 cut(s)	522, 1072, 1201
HindII	GTYRAC	3 cut(s)	522, 1072, 1201
HinfI	GANTC	8 cut(s)	160, 434, 472, 641, 712, 1124, 1478, 1814
HpaII	CCGG	7 cut(s)	269, 482, 516, 734, 785, 1130, 1490
HphI	GGTGA	6 cut(s)	91, 259, 1119, 1385, 1756, 1844
Hpy166II	GTNNAC	5 cut(s)	154, 522, 1072, 1201, 1486
Hpy188III	TCNNGA	5 cut(s)	719, 825, 951, 1435, 1791
Hpy8I	GTNNAC	5 cut(s)	154, 522, 1072, 1201, 1486
Hpy99I	CGWCG	2 cut(s)	143, 526
HpyAV	CCTTC	5 cut(s)	244, 831, 996, 1536, 1710
HpyCH4III	ACNGT	4 cut(s)	730, 1091, 1111, 1861
HpyF3I	CTNAG	6 cut(s)	243, 536, 957, 1379, 1415, 1549
Hsp92II	CATG	5 cut(s)	603, 860, 875, 900, 1150
HspAI	GCGC	2 cut(s)	126, 416
KpnI	GGTACC	1 cut(s)	1029
Ksp22I	TGATCA	2 cut(s)	213, 1558
LguI	GCTCTTC	1 cut(s)	924
LmnI	GCTCC	5 cut(s)	358, 540, 1425, 1549, 1793
Lsp1109I	GCAGC	5 cut(s)	358, 409, 412, 1509, 1745
LweI	GCATC	6 cut(s)	370, 568, 956, 1384, 1581, 1704
MaeI	CTAG	4 cut(s)	486, 825, 1050, 1602
MaeIII	GTNAC	3 cut(s)	565, 1111, 1125
MflI	RGATCY	5 cut(s)	259, 808, 827, 865, 1622
MhlI	GDGCHC	2 cut(s)	363, 1060
MlsI	TGGCCA	1 cut(s)	1910
MluCI	AATT	3 cut(s)	217, 756, 1269
MluNI	TGGCCA	1 cut(s)	1910
MlyI	GAGTC	3 cut(s)	1133, 1487, 1823
Mox20I	TGGCCA	1 cut(s)	1910
Mph1103I	ATGCAT	1 cut(s)	898
MroXI	GAANNNNTTC	2 cut(s)	711, 1161
MscI	TGGCCA	1 cut(s)	1910
MseI	TTAA	3 cut(s)	390, 561, 1032
MslI	CAYNNNNRTG	2 cut(s)	598, 600
Msp20I	TGGCCA	1 cut(s)	1910
MspA1I	CMGCKG	1 cut(s)	1736
MspI	CCGG	7 cut(s)	269, 482, 516, 734, 785, 1130, 1490
MspR9I	CCNGG	8 cut(s)	270, 482, 517, 786, 1490, 1491, 1538, 1895
Mva1269I	GAATGC	3 cut(s)	397, 418, 898
MvaI	CCWGG	2 cut(s)	1538, 1895
MvnI	CGCG	1 cut(s)	952
NciI	CCSGG	6 cut(s)	270, 482, 517, 786, 1490, 1491
NcoI	CCATGG	1 cut(s)	1146
NheI	GCTAGC	1 cut(s)	485
NlaIII	CATG	5 cut(s)	603, 860, 875, 900, 1150
NlaIV	GGNNCC	5 cut(s)	38, 261, 360, 1027, 1421
NmuCI	GTSAC	2 cut(s)	565, 1125
NruI	TCGCGA	1 cut(s)	952
NsiI	ATGCAT	1 cut(s)	898
NspI	RCATGY	1 cut(s)	860
NspV	TTCGAA	1 cut(s)	410
PaeR7I	CTCGAG	1 cut(s)	1059
PaqCI	CACCTGC	1 cut(s)	1361
PciI	ACATGT	1 cut(s)	856
PciSI	GCTCTTC	1 cut(s)	924
PcsI	WCGNNNNNNNCGW	2 cut(s)	770, 1834
PctI	GAATGC	3 cut(s)	397, 418, 898
PdmI	GAANNNNTTC	2 cut(s)	711, 1161
PfeI	GAWTC	5 cut(s)	160, 434, 472, 641, 712
PflFI	GACNNNGTC	1 cut(s)	1430
PkrI	GCNGC	5 cut(s)	373, 424, 427, 1524, 1735
PleI	GAGTC	3 cut(s)	1132, 1486, 1822
PpsI	GAGTC	3 cut(s)	1132, 1486, 1822
PscI	ACATGT	1 cut(s)	856
PsiI	TTATAA	3 cut(s)	290, 1274, 1904
Psp6I	CCWGG	2 cut(s)	1536, 1893
PspGI	CCWGG	2 cut(s)	1536, 1893
PspN4I	GGNNCC	5 cut(s)	38, 261, 360, 1027, 1421
PspPI	GGNCC	2 cut(s)	37, 900
PspXI	VCTCGAGB	1 cut(s)	1059
PstI	CTGCAG	1 cut(s)	808
PstNI	CAGNNNCTG	1 cut(s)	677
PsuI	RGATCY	5 cut(s)	259, 808, 827, 865, 1622
PsyI	GACNNNGTC	1 cut(s)	1430
RruI	TCGCGA	1 cut(s)	952
RsaI	GTAC	5 cut(s)	155, 732, 861, 978, 1027
RsaNI	GTAC	5 cut(s)	154, 731, 860, 977, 1026
RseI	CAYNNNNRTG	2 cut(s)	598, 600
SalI	GTCGAC	1 cut(s)	520
SapI	GCTCTTC	1 cut(s)	924
SaqAI	TTAA	3 cut(s)	390, 561, 1032
SatI	GCNGC	5 cut(s)	372, 423, 426, 1523, 1734
Sau96I	GGNCC	2 cut(s)	37, 900
ScaI	AGTACT	1 cut(s)	978
SchI	GAGTC	3 cut(s)	1133, 1487, 1823
ScrFI	CCNGG	8 cut(s)	270, 482, 517, 786, 1490, 1491, 1538, 1895
SduI	GDGCHC	2 cut(s)	363, 1060
SfaNI	GCATC	6 cut(s)	370, 568, 956, 1384, 1581, 1704
SfcI	CTRYAG	2 cut(s)	804, 1648
Sfr274I	CTCGAG	1 cut(s)	1059
SfuI	TTCGAA	1 cut(s)	410
SinI	GGWCC	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	1059
SmaI	CCCGGG	1 cut(s)	1491
SmiMI	CAYNNNNRTG	2 cut(s)	598, 600
SmlI	CTYRAG	2 cut(s)	1059, 1709
SmoI	CTYRAG	2 cut(s)	1059, 1709
SpeI	ACTAGT	1 cut(s)	1049
Sse9I	AATT	3 cut(s)	217, 756, 1269
SsiI	CCGC	9 cut(s)	19, 54, 76, 102, 132, 881, 1475, 1736, 1873
SspI	AATATT	1 cut(s)	559
SspMI	CTAG	4 cut(s)	486, 825, 1050, 1602
StyD4I	CCNGG	8 cut(s)	268, 480, 515, 784, 1488, 1489, 1536, 1893
StyI	CCWWGG	2 cut(s)	1080, 1146
TaaI	ACNGT	4 cut(s)	730, 1091, 1111, 1861
TaqI	TCGA	4 cut(s)	221, 410, 521, 1060
TaqII	GACCGA	1 cut(s)	54
TasI	AATT	3 cut(s)	217, 756, 1269
TatI	WGTACW	3 cut(s)	153, 859, 976
TfiI	GAWTC	5 cut(s)	160, 434, 472, 641, 712
Tru1I	TTAA	3 cut(s)	390, 561, 1032
Tru9I	TTAA	3 cut(s)	390, 561, 1032
TscAI	CASTG	7 cut(s)	497, 574, 657, 946, 1114, 1504, 1662
TseFI	GTSAC	2 cut(s)	565, 1125
TseI	GCWGC	5 cut(s)	371, 422, 425, 1522, 1733
Tsp45I	GTSAC	2 cut(s)	565, 1125
TspDTI	ATGAA	7 cut(s)	588, 860, 900, 1206, 1293, 1368, 1659
TspGWI	ACGGA	2 cut(s)	1218, 1300
TspMI	CCCGGG	1 cut(s)	1489
TspRI	CASTG	7 cut(s)	497, 574, 657, 946, 1114, 1504, 1662
Tth111I	GACNNNGTC	1 cut(s)	1430
VpaK11BI	GGWCC	1 cut(s)	37
XbaI	TCTAGA	1 cut(s)	824
XceI	RCATGY	1 cut(s)	860
XhoI	CTCGAG	1 cut(s)	1059
XmaI	CCCGGG	1 cut(s)	1489
XmiI	GTMKAC	2 cut(s)	521, 1485
XmnI	GAANNNNTTC	2 cut(s)	711, 1161
XspI	CTAG	4 cut(s)	486, 825, 1050, 1602
ZrmI	AGTACT	1 cut(s)	978
Zsp2I	ATGCAT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.