Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006644

Physical Location & Seq

Genomic Coordinates Forward (+)

9887457 .. 9893157

Gene Structure 5701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG109200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1920 bp

ATGGGAGAGACGGGGAAGCGGTATCGTTCGCAGAGGGACCGAGATTACGATGGCGGGAACAAGAACCAGAAGAGGCGGACGAATGACAGAGAAGATAGGGGCGGTGGCGGTGGCGGTGGCGGTGGAGGCGCTGGCGGTGGCGACGAGGTTGTTGTGTACAGGATTCTATGCCCGGTTGGGGTCATTGGAAGCGTGATTGGGAAGAGTGGTAAAGTGATCAATTCGATTAGACAGGATAGTAGAGCTAAGGTGAAGGTTGTGGATCCATTTCCGGGTGCGAAAGATAGGGTTATAACTATTTATAGCTATGTTAGGGACAAGGAGGAGGTTGATGTTGATGATGAGTTCAGTAGTGATAGGGAGCCCTTGTGTGCTGCACAGGATGCTCTATTTAAAGTGCATTCTGCTATTTCGAATGCGCTGGCTGCTGCTGGAGATTCTGATAAGAGGAGGAGGGATAAGGAAGAGTGTCAGATTCTTGTCCCCGCTAGCCAGTGTGCTAATGTGATAGGTAAGGCCGGGTCGACGATAAAGAAACTGAGGAGCAGGACGAGGACGAATATTAAGGTCACTGCAAAAGATGCCTCCGAACCAACACATTCATGTGCAATGGACTTTGACAACTTTGTTGTGATAAATGGAGAATCAGAAGCAGTGAAAAAAGCATTATTTGCAGTTTCTGCAATCATATACAAGTTTCCTGCACGAGAACAGATTCCTCTTGATACAACAGTACCGGAAGCCCCTCCAAGCATAATAATTCCATCGGATATGCCGATTTATCAACCGGGTGGATTATATAACCCTGCAGATCCTATCATTCCTTCTAGATCCCTACCTCCACTCCTAAATGCTACACATGTACAGGATCTTCATGGTTATGCGGATACAGGGAATGCATGGCCCATATATTCATCTGCTCTTCCTTTAGTTTCTGGTTTCAGTGTGGCATCGCGATCTGAGGAGTTAGTTGTGAGAGTACTATGCCCTTCTGACAAGATTGGTCGTGTCATTGGAAAGGGTGGGGGTACCATTAAAAGCATAAGGCAGACTAGTGGTGCTCGAGTTGAGGTTGACGATACCAAGGATGACCGTGATGAGTGCATAATCACTGTTACTTCAACAGAGTCACCGGATGATCTGAAGTCCATGGCAGTTGAAGCTGTTCTATTGTTGCAAGGGAAGATAAATGATGAAGATGTTGACAATGTTTCTATACGGCTTCTTGTTCCGTCTAAAGTTATTGGTTGTATTATTGGAAAAAATGGTTCAATTATAAATGAAATACGGAAGAGAACAAAAGCTGACATCCGTATTTCTAAAGCTGATAAGCCTAAATGTGCTGACGCTAATGATGAACTTGTTGAGGTGGCAGGAGATCTCAGTAGTTTGAGAGATGCACTTATTCAGATTGTTCTAAGGCTCCGAGACGATGTCTTGAAAGATAGAGATGGTGGTCATAACCCTGCTGTTGGTGCGGAGTCGGTATACCCGGGTAGCACTGGTCTCCCTTTGCCATCTGTGCTGCCTTCAGTTCCCCAGGTTGCTCCCTTAGGTTATGATCAGAGGGCTGAAAGTGCAAGTGGCTTGGGGATGCTTTCTTCTAGTGGCCTGTTTGGATATGGATCTCTGCCGATGGGGGAAGATGGCTACGGATCAGTGTCTTCATATTCATCCAAGCTATATGGAGGATTGCCACCCCCTTCAACACTTGAGATGCTCATTCCTGCTAATGCAGCGGGTAAGGTGATTGGCAAAGGAGGGGCAAATATAGCTAACATTCGGAAGATATCAGGAGCAATGATAGAGATTTCCGAGTCCAAATCTTCACGGGGTGTTCGTATTGCTCATATATCTGGCACAGTTGAACAGAACCGGACAGCAGAGAACTTGATCCAGGCATTTATAATGGCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

639

Amino Acids

67.88

Weight (kDa)

6.65

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	53 - 102	3.2e-11	KH domain
KH_1	PF00013	157 - 226	5.6e-13	KH domain
KH_1	PF00013	325 - 376	1.3e-14	KH domain
KH_1	PF00013	406 - 471	2.7e-14	KH domain
KH_1	PF00013	570 - 633	1.4e-14	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46190 AT5G46190 AT5G46190 AT5G46190
fragaria_vesca	FvH4_3g05250 FvH4_3g05250 FvH4_3g05250 FvH4_3g05250 FvH4_3g05250
malus_domestica	MD05G1281400.v1.1 MD10G1260300.v1.1
prunus_persica	Prupe.4G083200_v2.0.a1 Prupe.4G083200_v2.0.a1 Prupe.4G083200_v2.0.a1
pyrus_communis	pycom05g26150 pycom10g21620
rosa_chinensis	RchiOBHm_Chr5g0014461
rosa_laevigata	RLG00000032112
rosa_multiflora	Rmu_sc0004194.1_g000002
rosa_roxburghii	Rroxscaffold_1G00062110
rosa_rugosa	Rorug05G0018400
rosa_samantha	Rh5AG113400 Rh5BG110100 Rh5CG121900 Rh5DG109200
rosa_wichuraiana	Rw5G009840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	293, 1277, 1907
Acc65I	GGTACC	1 cut(s)	1028
AccB1I	GGYRCC	1 cut(s)	1028
AccI	GTMKAC	2 cut(s)	524, 1488
AccII	CGCG	1 cut(s)	955
AclWI	GGATC	8 cut(s)	257, 270, 806, 825, 876, 1633, 1663, 1888
AcoI	YGGCCR	1 cut(s)	1911
AcuI	CTGAAG	2 cut(s)	1163, 1515
AdeI	CACNNNGTG	1 cut(s)	1835
AfaI	GTAC	5 cut(s)	158, 735, 864, 981, 1030
AfiI	CCNNNNNNNGG	3 cut(s)	178, 272, 1472
AflIII	ACRYGT	1 cut(s)	859
AgsI	TTSAA	6 cut(s)	1122, 1160, 1272, 1441, 1707, 1868
AhlI	ACTAGT	1 cut(s)	1052
AjnI	CCWGG	2 cut(s)	1539, 1896
AluBI	AGCT	7 cut(s)	245, 306, 1163, 1304, 1325, 1681, 1775
AluI	AGCT	7 cut(s)	245, 306, 1163, 1304, 1325, 1681, 1775
Alw21I	GWGCWC	1 cut(s)	1063
Alw26I	GTCTC	3 cut(s)	2, 1422, 1511
AlwI	GGATC	8 cut(s)	257, 270, 806, 825, 876, 1633, 1663, 1888
AlwNI	CAGNNNCTG	1 cut(s)	680
Ama87I	CYCGRG	2 cut(s)	1062, 1492
AoxI	GGCC	4 cut(s)	516, 902, 1609, 1911
ApeKI	GCWGC	5 cut(s)	374, 425, 428, 1525, 1736
Asp700I	GAANNNNTTC	2 cut(s)	714, 1164
Asp718I	GGTACC	1 cut(s)	1028
AspLEI	GCGC	2 cut(s)	131, 421
AspS9I	GGNCC	2 cut(s)	37, 903
AsuC2I	CCSGG	6 cut(s)	173, 273, 520, 789, 1493, 1494
AsuHPI	GGTGA	3 cut(s)	262, 1122, 1759
AsuII	TTCGAA	1 cut(s)	413
AsuNHI	GCTAGC	1 cut(s)	488
AvaI	CYCGRG	2 cut(s)	1062, 1492
AvaII	GGWCC	1 cut(s)	37
AxyI	CCTNAGG	1 cut(s)	1552
BaeI	ACNNNNGTAYC	4 cut(s)	717, 717, 750, 750
BalI	TGGCCA	1 cut(s)	1913
BamHI	GGATCC	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	1028
BanII	GRGCYC	1 cut(s)	366
BarI	GAAGNNNNNNTAC	2 cut(s)	855, 887
BauI	CACGAG	1 cut(s)	705
BbsI	GAAGAC	1 cut(s)	1656
Bbv12I	GWGCWC	1 cut(s)	1063
BbvI	GCAGC	5 cut(s)	361, 412, 415, 1512, 1748
BccI	CCATC	6 cut(s)	44, 772, 1445, 1525, 1630, 1640
BceAI	ACGGC	1 cut(s)	1235
BciT130I	CCWGG	2 cut(s)	1541, 1898
BciVI	GTATCC	1 cut(s)	880
BclI	TGATCA	2 cut(s)	216, 1561
BcnI	CCSGG	6 cut(s)	173, 273, 520, 789, 1493, 1494
BcoDI	GTCTC	3 cut(s)	2, 1422, 1511
BcuI	ACTAGT	1 cut(s)	1052
BfaI	CTAG	4 cut(s)	489, 828, 1053, 1605
BfmI	CTRYAG	1 cut(s)	807
BfoI	RGCGCY	1 cut(s)	132
BfuI	GTATCC	1 cut(s)	880
BglII	AGATCT	1 cut(s)	1378
BisI	GCNGC	5 cut(s)	375, 426, 429, 1526, 1737
BlsI	GCNGC	5 cut(s)	376, 427, 430, 1527, 1738
BmcAI	AGTACT	1 cut(s)	981
Bme1390I	CCNGG	8 cut(s)	173, 273, 520, 789, 1493, 1494, 1541, 1898
Bme18I	GGWCC	1 cut(s)	37
BmeT110I	CYCGRG	2 cut(s)	1062, 1492
BmgT120I	GGNCC	2 cut(s)	37, 903
BmiI	GGNNCC	5 cut(s)	38, 264, 363, 1030, 1424
BmrFI	CCNGG	8 cut(s)	173, 273, 520, 789, 1493, 1494, 1541, 1898
BmsI	GCATC	6 cut(s)	373, 571, 959, 1387, 1584, 1707
BmtI	GCTAGC	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	1656
BpmI	CTGGAG	1 cut(s)	453
Bpu10I	CCTNAGC	1 cut(s)	246
Bpu14I	TTCGAA	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	1733
BpuMI	CCSGG	6 cut(s)	173, 273, 520, 789, 1493, 1494
BsaBI	GATNNNNATC	1 cut(s)	1624
BsaI	GGTCTC	1 cut(s)	1511
BsaJI	CCNNGG	4 cut(s)	1083, 1149, 1492, 1539
BsaWI	WCCGGW	3 cut(s)	736, 1132, 1875
BsaXI	ACNNNNNCTCC	4 cut(s)	353, 383, 828, 858
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 272, 1472
Bse1I	ACTGG	2 cut(s)	493, 1507
Bse21I	CCTNAGG	1 cut(s)	1552
Bse3DI	GCAATG	2 cut(s)	615, 1806
Bse8I	GATNNNNATC	1 cut(s)	1624
BseBI	CCWGG	2 cut(s)	1541, 1898
BseDI	CCNNGG	4 cut(s)	1083, 1149, 1492, 1539
BseGI	GGATG	6 cut(s)	388, 1093, 1141, 1308, 1599, 1673
BseJI	GATNNNNATC	1 cut(s)	1624
BseLI	CCNNNNNNNGG	3 cut(s)	178, 272, 1472
BseMI	GCAATG	2 cut(s)	615, 1806
BseMII	CTCAG	3 cut(s)	530, 951, 1396
BseNI	ACTGG	2 cut(s)	493, 1507
BseRI	GAGGAG	5 cut(s)	338, 463, 466, 556, 977
BseXI	GCAGC	5 cut(s)	361, 412, 415, 1512, 1748
BsgI	GTGCAG	2 cut(s)	360, 687
Bsh1236I	CGCG	1 cut(s)	955
BshFI	GGCC	4 cut(s)	518, 904, 1611, 1913
BshNI	GGYRCC	1 cut(s)	1028
BsiHKAI	GWGCWC	1 cut(s)	1063
BsiHKCI	CYCGRG	2 cut(s)	1062, 1492
BsiSI	CCGG	8 cut(s)	173, 272, 519, 737, 788, 1133, 1493, 1876
BslFI	GGGAC	3 cut(s)	50, 329, 467
BslI	CCNNNNNNNGG	3 cut(s)	178, 272, 1472
BsmAI	GTCTC	3 cut(s)	2, 1422, 1511
BsmBI	CGTCTC	2 cut(s)	2, 1422
BsmFI	GGGAC	3 cut(s)	50, 329, 467
BsmI	GAATGC	3 cut(s)	400, 421, 901
BsnI	GGCC	4 cut(s)	518, 904, 1611, 1913
Bso31I	GGTCTC	1 cut(s)	1511
BsoBI	CYCGRG	2 cut(s)	1062, 1492
Bsp119I	TTCGAA	1 cut(s)	413
Bsp1286I	GDGCHC	2 cut(s)	366, 1063
Bsp1407I	TGTACA	2 cut(s)	156, 862
Bsp19I	CCATGG	1 cut(s)	1149
Bsp68I	TCGCGA	1 cut(s)	955
BspANI	GGCC	4 cut(s)	518, 904, 1611, 1913
BspCNI	CTCAG	3 cut(s)	531, 952, 1395
BspFNI	CGCG	1 cut(s)	955
BspLI	GGNNCC	5 cut(s)	38, 264, 363, 1030, 1424
BspMAI	CTGCAG	1 cut(s)	811
BspOI	GCTAGC	1 cut(s)	492
BspPI	GGATC	8 cut(s)	257, 270, 806, 825, 876, 1633, 1663, 1888
BspQI	GCTCTTC	1 cut(s)	927
BspT104I	TTCGAA	1 cut(s)	413
BspT107I	GGYRCC	1 cut(s)	1028
BspTNI	GGTCTC	1 cut(s)	1511
BsrDI	GCAATG	2 cut(s)	615, 1806
BsrGI	TGTACA	2 cut(s)	156, 862
BsrI	ACTGG	2 cut(s)	493, 1507
BssECI	CCNNGG	4 cut(s)	1083, 1149, 1492, 1539
BssNAI	GTATAC	1 cut(s)	1489
BssSI	CACGAG	1 cut(s)	705
BssT1I	CCWWGG	2 cut(s)	1083, 1149
Bst1107I	GTATAC	1 cut(s)	1489
Bst2BI	CACGAG	1 cut(s)	705
Bst2UI	CCWGG	2 cut(s)	1541, 1898
Bst4CI	ACNGT	4 cut(s)	733, 1094, 1114, 1864
Bst6I	CTCTTC	5 cut(s)	65, 197, 459, 927, 1286
BstAPI	GCANNNNNTGC	4 cut(s)	383, 581, 671, 680
BstAUI	TGTACA	2 cut(s)	156, 862
BstBI	TTCGAA	1 cut(s)	413
BstC8I	GCNNGC	3 cut(s)	133, 423, 490
BstDEI	CTNAG	6 cut(s)	246, 539, 960, 1382, 1418, 1552
BstDSI	CCRYGG	1 cut(s)	1149
BstF5I	GGATG	6 cut(s)	388, 1093, 1141, 1308, 1599, 1673
BstFNI	CGCG	1 cut(s)	955
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	2 cut(s)	131, 421
BstMAI	GTCTC	3 cut(s)	2, 1422, 1511
BstNI	CCWGG	2 cut(s)	1541, 1898
BstNSI	RCATGY	1 cut(s)	863
BstSCI	CCNGG	8 cut(s)	171, 271, 518, 787, 1491, 1492, 1539, 1896
BstSFI	CTRYAG	1 cut(s)	807
BstUI	CGCG	1 cut(s)	955
BstV1I	GCAGC	5 cut(s)	361, 412, 415, 1512, 1748
BstV2I	GAAGAC	1 cut(s)	1656
BstX2I	RGATCY	6 cut(s)	262, 811, 830, 868, 1378, 1625
BstYI	RGATCY	6 cut(s)	262, 811, 830, 868, 1378, 1625
BstZ17I	GTATAC	1 cut(s)	1489
Bsu36I	CCTNAGG	1 cut(s)	1552
BsuI	GTATCC	1 cut(s)	880
BsuRI	GGCC	4 cut(s)	518, 904, 1611, 1913
BtgI	CCRYGG	1 cut(s)	1149
BtgZI	GCGATG	1 cut(s)	936
BtsCI	GGATG	6 cut(s)	388, 1093, 1141, 1308, 1599, 1673
BtsI	GCAGTG	2 cut(s)	570, 660
BtsIMutI	CAGTG	7 cut(s)	500, 570, 660, 949, 1110, 1500, 1665
BtuMI	TCGCGA	1 cut(s)	955
Cac8I	GCNNGC	3 cut(s)	133, 423, 490
CaiI	CAGNNNCTG	1 cut(s)	680
CfoI	GCGC	2 cut(s)	131, 421
Cfr13I	GGNCC	2 cut(s)	37, 903
Cfr9I	CCCGGG	1 cut(s)	1492
CseI	GACGC	1 cut(s)	1355
Csp6I	GTAC	5 cut(s)	157, 734, 863, 980, 1029
CviAII	CATG	5 cut(s)	603, 860, 875, 900, 1150
CviQI	GTAC	5 cut(s)	157, 734, 863, 980, 1029
DdeI	CTNAG	6 cut(s)	246, 539, 960, 1382, 1418, 1552
DraI	TTTAAA	1 cut(s)	394
DraIII	CACNNNGTG	1 cut(s)	1835
EaeI	YGGCCR	1 cut(s)	1911
Eam1104I	CTCTTC	5 cut(s)	65, 197, 459, 927, 1286
EarI	CTCTTC	5 cut(s)	65, 197, 459, 927, 1286
EciI	GGCGGA	1 cut(s)	91
Eco130I	CCWWGG	2 cut(s)	1083, 1149
Eco24I	GRGCYC	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	1511
Eco32I	GATATC	1 cut(s)	1791
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	2 cut(s)	1163, 1515
Eco81I	CCTNAGG	1 cut(s)	1552
Eco88I	CYCGRG	2 cut(s)	1062, 1492
EcoRII	CCWGG	2 cut(s)	1539, 1896
EcoRV	GATATC	1 cut(s)	1791
EcoT14I	CCWWGG	2 cut(s)	1083, 1149
EcoT22I	ATGCAT	1 cut(s)	901
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	2 cut(s)	1083, 1149
Esp3I	CGTCTC	2 cut(s)	2, 1422
FaeI	CATG	5 cut(s)	606, 863, 878, 903, 1153
FaqI	GGGAC	3 cut(s)	50, 329, 467
FatI	CATG	5 cut(s)	602, 859, 874, 899, 1149
FauI	CCCGC	3 cut(s)	47, 493, 1732
FbaI	TGATCA	2 cut(s)	216, 1561
FblI	GTMKAC	2 cut(s)	524, 1488
Fnu4HI	GCNGC	5 cut(s)	375, 426, 429, 1526, 1737
FokI	GGATG	6 cut(s)	395, 1100, 1148, 1295, 1606, 1660
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	5 cut(s)	375, 426, 429, 1526, 1737
FspBI	CTAG	4 cut(s)	489, 828, 1053, 1605
GlaI	GCGC	2 cut(s)	130, 420
GluI	GCNGC	5 cut(s)	375, 426, 429, 1526, 1737
GsuI	CTGGAG	1 cut(s)	453
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	4 cut(s)	518, 904, 1611, 1913
HapII	CCGG	8 cut(s)	173, 272, 519, 737, 788, 1133, 1493, 1876
HgaI	GACGC	1 cut(s)	1355
HhaI	GCGC	2 cut(s)	131, 421
Hin1II	CATG	5 cut(s)	606, 863, 878, 903, 1153
Hin6I	GCGC	2 cut(s)	129, 419
HinP1I	GCGC	2 cut(s)	129, 419
HincII	GTYRAC	3 cut(s)	525, 1075, 1204
HindII	GTYRAC	3 cut(s)	525, 1075, 1204
HinfI	GANTC	8 cut(s)	163, 437, 475, 644, 715, 1127, 1481, 1817
HpaII	CCGG	8 cut(s)	173, 272, 519, 737, 788, 1133, 1493, 1876
HphI	GGTGA	3 cut(s)	262, 1122, 1759
Hpy166II	GTNNAC	5 cut(s)	157, 525, 1075, 1204, 1489
Hpy188III	TCNNGA	5 cut(s)	722, 828, 954, 1438, 1794
Hpy8I	GTNNAC	5 cut(s)	157, 525, 1075, 1204, 1489
Hpy99I	CGWCG	2 cut(s)	146, 529
HpyAV	CCTTC	5 cut(s)	247, 834, 999, 1539, 1713
HpyCH4III	ACNGT	4 cut(s)	733, 1094, 1114, 1864
HpyF3I	CTNAG	6 cut(s)	246, 539, 960, 1382, 1418, 1552
Hsp92II	CATG	5 cut(s)	606, 863, 878, 903, 1153
HspAI	GCGC	2 cut(s)	129, 419
KpnI	GGTACC	1 cut(s)	1032
Ksp22I	TGATCA	2 cut(s)	216, 1561
LguI	GCTCTTC	1 cut(s)	927
LmnI	GCTCC	5 cut(s)	361, 543, 1428, 1552, 1796
Lsp1109I	GCAGC	5 cut(s)	361, 412, 415, 1512, 1748
LweI	GCATC	6 cut(s)	373, 571, 959, 1387, 1584, 1707
MaeI	CTAG	4 cut(s)	489, 828, 1053, 1605
MaeIII	GTNAC	3 cut(s)	568, 1114, 1128
MflI	RGATCY	6 cut(s)	262, 811, 830, 868, 1378, 1625
MhlI	GDGCHC	2 cut(s)	366, 1063
MlsI	TGGCCA	1 cut(s)	1913
MluCI	AATT	3 cut(s)	220, 759, 1272
MluNI	TGGCCA	1 cut(s)	1913
MlyI	GAGTC	3 cut(s)	1136, 1490, 1826
Mox20I	TGGCCA	1 cut(s)	1913
Mph1103I	ATGCAT	1 cut(s)	901
MroXI	GAANNNNTTC	2 cut(s)	714, 1164
MscI	TGGCCA	1 cut(s)	1913
MseI	TTAA	3 cut(s)	393, 564, 1035
MslI	CAYNNNNRTG	3 cut(s)	601, 603, 879
Msp20I	TGGCCA	1 cut(s)	1913
MspA1I	CMGCKG	1 cut(s)	1739
MspI	CCGG	8 cut(s)	173, 272, 519, 737, 788, 1133, 1493, 1876
MspR9I	CCNGG	8 cut(s)	173, 273, 520, 789, 1493, 1494, 1541, 1898
Mva1269I	GAATGC	3 cut(s)	400, 421, 901
MvaI	CCWGG	2 cut(s)	1541, 1898
MvnI	CGCG	1 cut(s)	955
NciI	CCSGG	6 cut(s)	173, 273, 520, 789, 1493, 1494
NcoI	CCATGG	1 cut(s)	1149
NheI	GCTAGC	1 cut(s)	488
NlaIII	CATG	5 cut(s)	606, 863, 878, 903, 1153
NlaIV	GGNNCC	5 cut(s)	38, 264, 363, 1030, 1424
NmuCI	GTSAC	2 cut(s)	568, 1128
NruI	TCGCGA	1 cut(s)	955
NsiI	ATGCAT	1 cut(s)	901
NspI	RCATGY	1 cut(s)	863
NspV	TTCGAA	1 cut(s)	413
PaeR7I	CTCGAG	1 cut(s)	1062
PciI	ACATGT	1 cut(s)	859
PciSI	GCTCTTC	1 cut(s)	927
PcsI	WCGNNNNNNNCGW	2 cut(s)	773, 1837
PctI	GAATGC	3 cut(s)	400, 421, 901
PdmI	GAANNNNTTC	2 cut(s)	714, 1164
PfeI	GAWTC	5 cut(s)	163, 437, 475, 644, 715
PflFI	GACNNNGTC	1 cut(s)	1433
PkrI	GCNGC	5 cut(s)	376, 427, 430, 1527, 1738
PleI	GAGTC	3 cut(s)	1135, 1489, 1825
PpsI	GAGTC	3 cut(s)	1135, 1489, 1825
PscI	ACATGT	1 cut(s)	859
PsiI	TTATAA	3 cut(s)	293, 1277, 1907
Psp6I	CCWGG	2 cut(s)	1539, 1896
PspGI	CCWGG	2 cut(s)	1539, 1896
PspN4I	GGNNCC	5 cut(s)	38, 264, 363, 1030, 1424
PspPI	GGNCC	2 cut(s)	37, 903
PspXI	VCTCGAGB	1 cut(s)	1062
PstI	CTGCAG	1 cut(s)	811
PstNI	CAGNNNCTG	1 cut(s)	680
PsuI	RGATCY	6 cut(s)	262, 811, 830, 868, 1378, 1625
PsyI	GACNNNGTC	1 cut(s)	1433
RruI	TCGCGA	1 cut(s)	955
RsaI	GTAC	5 cut(s)	158, 735, 864, 981, 1030
RsaNI	GTAC	5 cut(s)	157, 734, 863, 980, 1029
RseI	CAYNNNNRTG	3 cut(s)	601, 603, 879
SalI	GTCGAC	1 cut(s)	523
SapI	GCTCTTC	1 cut(s)	927
SaqAI	TTAA	3 cut(s)	393, 564, 1035
SatI	GCNGC	5 cut(s)	375, 426, 429, 1526, 1737
Sau96I	GGNCC	2 cut(s)	37, 903
ScaI	AGTACT	1 cut(s)	981
SchI	GAGTC	3 cut(s)	1136, 1490, 1826
ScrFI	CCNGG	8 cut(s)	173, 273, 520, 789, 1493, 1494, 1541, 1898
SduI	GDGCHC	2 cut(s)	366, 1063
SfaNI	GCATC	6 cut(s)	373, 571, 959, 1387, 1584, 1707
SfcI	CTRYAG	1 cut(s)	807
Sfr274I	CTCGAG	1 cut(s)	1062
SfuI	TTCGAA	1 cut(s)	413
SinI	GGWCC	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	1062
SmaI	CCCGGG	1 cut(s)	1494
SmiMI	CAYNNNNRTG	3 cut(s)	601, 603, 879
SmlI	CTYRAG	2 cut(s)	1062, 1712
SmoI	CTYRAG	2 cut(s)	1062, 1712
SpeI	ACTAGT	1 cut(s)	1052
Sse9I	AATT	3 cut(s)	220, 759, 1272
SspI	AATATT	1 cut(s)	562
SspMI	CTAG	4 cut(s)	489, 828, 1053, 1605
StyD4I	CCNGG	8 cut(s)	171, 271, 518, 787, 1491, 1492, 1539, 1896
StyI	CCWWGG	2 cut(s)	1083, 1149
TaaI	ACNGT	4 cut(s)	733, 1094, 1114, 1864
TaqI	TCGA	4 cut(s)	224, 413, 524, 1063
TaqII	GACCGA	1 cut(s)	54
TasI	AATT	3 cut(s)	220, 759, 1272
TatI	WGTACW	3 cut(s)	156, 862, 979
TfiI	GAWTC	5 cut(s)	163, 437, 475, 644, 715
Tru1I	TTAA	3 cut(s)	393, 564, 1035
Tru9I	TTAA	3 cut(s)	393, 564, 1035
TscAI	CASTG	7 cut(s)	500, 577, 660, 949, 1117, 1507, 1665
TseFI	GTSAC	2 cut(s)	568, 1128
TseI	GCWGC	5 cut(s)	374, 425, 428, 1525, 1736
Tsp45I	GTSAC	2 cut(s)	568, 1128
TspDTI	ATGAA	8 cut(s)	591, 863, 903, 1209, 1296, 1371, 1656, 1662
TspGWI	ACGGA	4 cut(s)	1221, 1301, 1303, 1668
TspMI	CCCGGG	1 cut(s)	1492
TspRI	CASTG	7 cut(s)	500, 577, 660, 949, 1117, 1507, 1665
Tth111I	GACNNNGTC	1 cut(s)	1433
VpaK11BI	GGWCC	1 cut(s)	37
XbaI	TCTAGA	1 cut(s)	827
XceI	RCATGY	1 cut(s)	863
XhoI	CTCGAG	1 cut(s)	1062
XmaI	CCCGGG	1 cut(s)	1492
XmiI	GTMKAC	2 cut(s)	524, 1488
XmnI	GAANNNNTTC	2 cut(s)	714, 1164
XspI	CTAG	4 cut(s)	489, 828, 1053, 1605
ZrmI	AGTACT	1 cut(s)	981
Zsp2I	ATGCAT	1 cut(s)	901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.