Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008820

Physical Location & Seq

Genomic Coordinates Reverse (-)

27898525 .. 27900974

Gene Structure 2450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAGTCGACTGTTGCAGAAGGTACCATTAGCATCTGTGTTTCAAAGCTTCACTGGAACTCATGGACGTTCCGGTAGCCGAGTGTTTGAGATGGTTCGGAACAATGTCATTGTGGGATTGTCATCCAGTAGAAAATCGGTTTCTGGATTTAGAACTTTTTGCACTGGCAAAGATTTGTCAATAAAGAAGTGTGTGTCTTGCGACTCAAAGGATATGCGACCCATGACTGAACAAGCAGCAAATGAATTAATCACAAAGGTGGACGGATGGAATTTGGTGCATGAAGGTGATGCCTTGAGACTGAAACGGTCATGGAAAGTTAAGACCTTCACAAAAGGACTTGAAATGTTTAAGCTCATAGCTGATCTTGCAGAAGCAGAAGGTCATCATCCAGATCTTCATCTAGTTGGATGGAACAATGTAACAGTCGAGATATGGACACATGCGGTTGGTGGATTGACCGAGAATGACTTCATACTTGCTGCTAAGATCAATGGAATCAGCATGCAACACCTACTTAGGCGGAAAGCTACCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Pterin_4a

Protein Analysis

180

Amino Acids

19.95

Weight (kDa)

9.67

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29810 AT1G29810
fragaria_vesca	FvH4_3g06270
malus_domestica	MD05G1290700.v1.1 MD16G1203200.v1.1
prunus_persica	Prupe.4G075000_v2.0.a1 Prupe.4G075000_v2.0.a1 Prupe.4G075000_v2.0.a1 Prupe.4G075000_v2.0.a1 Prupe.4G075000_v2.0.a1
pyrus_communis	pycom05g26730 pycom10g22260
rosa_chinensis	RchiOBHm_Chr5g0013041
rosa_laevigata	RLG00000031979
rosa_multiflora	Rmu_sc0003892.1_g000018 Rmu_sc0037731.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063530
rosa_rugosa	Rorug05G0006800
rosa_samantha	Rh5AG100900 Rh5BG097400 Rh5CG109500 Rh5DG096300
rosa_wichuraiana	Rw5G008810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	22
AccB1I	GGYRCC	1 cut(s)	22
AccI	GTMKAC	1 cut(s)	7
AciI	CCGC	2 cut(s)	446, 523
AcsI	RAATTY	1 cut(s)	271
AfaI	GTAC	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	44, 344
AleI	CACNNNNGTG	1 cut(s)	257
AluBI	AGCT	4 cut(s)	48, 355, 362, 530
AluI	AGCT	4 cut(s)	48, 355, 362, 530
Alw26I	GTCTC	1 cut(s)	292
ApeKI	GCWGC	2 cut(s)	236, 482
ApoI	RAATTY	1 cut(s)	271
AseI	ATTAAT	1 cut(s)	248
Asp700I	GAANNNNTTC	1 cut(s)	470
Asp718I	GGTACC	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	248, 469
BccI	CCATC	3 cut(s)	85, 261, 405
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	1 cut(s)	404
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	2 cut(s)	237, 483
BlsI	GCNGC	2 cut(s)	238, 484
BmiI	GGNNCC	1 cut(s)	24
BmsI	GCATC	2 cut(s)	41, 280
BpuEI	CTTGAG	1 cut(s)	316
BsaBI	GATNNNNATC	2 cut(s)	121, 399
BsaWI	WCCGGW	1 cut(s)	71
Bse1I	ACTGG	3 cut(s)	58, 126, 169
Bse8I	GATNNNNATC	2 cut(s)	121, 399
BseGI	GGATG	4 cut(s)	122, 272, 388, 416
BseJI	GATNNNNATC	2 cut(s)	121, 399
BseNI	ACTGG	3 cut(s)	58, 126, 169
BseXI	GCAGC	2 cut(s)	248, 469
BshNI	GGYRCC	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	364, 394, 489
BspACI	CCGC	2 cut(s)	446, 523
BspLI	GGNNCC	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	22
BsrI	ACTGG	3 cut(s)	58, 126, 169
BssMI	GATC	3 cut(s)	364, 394, 489
Bst4CI	ACNGT	3 cut(s)	12, 309, 427
BstC8I	GCNNGC	1 cut(s)	506
BstDEI	CTNAG	2 cut(s)	486, 518
BstF5I	GGATG	4 cut(s)	122, 272, 388, 416
BstKTI	GATC	3 cut(s)	367, 397, 492
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	3 cut(s)	364, 394, 489
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNSI	RCATGY	2 cut(s)	446, 508
BstV1I	GCAGC	2 cut(s)	248, 469
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BtsCI	GGATG	4 cut(s)	122, 272, 388, 416
BtsIMutI	CAGTG	2 cut(s)	51, 162
Cac8I	GCNNGC	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	6 cut(s)	62, 223, 281, 312, 443, 505
CviJI	RGCY	5 cut(s)	48, 78, 355, 362, 530
CviKI_1	RGCY	5 cut(s)	48, 78, 355, 362, 530
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	2 cut(s)	486, 518
DpnI	GATC	3 cut(s)	366, 396, 491
DpnII	GATC	3 cut(s)	364, 394, 489
EciI	GGCGGA	1 cut(s)	538
FaeI	CATG	6 cut(s)	65, 226, 284, 315, 446, 508
FatI	CATG	6 cut(s)	61, 222, 280, 311, 442, 504
FblI	GTMKAC	1 cut(s)	7
Fnu4HI	GCNGC	2 cut(s)	237, 483
FokI	GGATG	4 cut(s)	109, 279, 375, 423
Fsp4HI	GCNGC	2 cut(s)	237, 483
FspBI	CTAG	1 cut(s)	404
GluI	GCNGC	2 cut(s)	237, 483
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	6 cut(s)	65, 226, 284, 315, 446, 508
HincII	GTYRAC	1 cut(s)	8
HindII	GTYRAC	1 cut(s)	8
HindIII	AAGCTT	1 cut(s)	46
HinfI	GANTC	3 cut(s)	4, 203, 498
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	8, 262
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	3 cut(s)	144, 392, 430
Hpy8I	GTNNAC	2 cut(s)	8, 262
HpyAV	CCTTC	4 cut(s)	13, 278, 337, 374
HpyCH4III	ACNGT	3 cut(s)	12, 309, 427
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	5 cut(s)	16, 162, 280, 371, 508
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	2 cut(s)	486, 518
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	6 cut(s)	65, 226, 284, 315, 446, 508
KpnI	GGTACC	1 cut(s)	26
Kzo9I	GATC	3 cut(s)	364, 394, 489
LpnPI	CCDG	6 cut(s)	39, 85, 129, 139, 150, 405
Lsp1109I	GCAGC	2 cut(s)	248, 469
LweI	GCATC	2 cut(s)	41, 280
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	3 cut(s)	366, 396, 491
MboI	GATC	3 cut(s)	364, 394, 489
MboII	GAAGA	1 cut(s)	389
MfeI	CAATTG	1 cut(s)	535
MflI	RGATCY	1 cut(s)	394
MluCI	AATT	3 cut(s)	245, 271, 535
MlyI	GAGTC	2 cut(s)	13, 197
MmeI	TCCRAC	1 cut(s)	388
MroXI	GAANNNNTTC	1 cut(s)	470
MseI	TTAA	3 cut(s)	248, 321, 351
MslI	CAYNNNNRTG	2 cut(s)	257, 285
MspI	CCGG	1 cut(s)	72
MunI	CAATTG	1 cut(s)	535
MwoI	GCNNNNNNNGC	1 cut(s)	368
NdeII	GATC	3 cut(s)	364, 394, 489
NlaIII	CATG	6 cut(s)	65, 226, 284, 315, 446, 508
NlaIV	GGNNCC	1 cut(s)	24
NmeAIII	GCCGAG	1 cut(s)	104
NspI	RCATGY	2 cut(s)	446, 508
OliI	CACNNNNGTG	1 cut(s)	257
PaeI	GCATGC	1 cut(s)	508
PdmI	GAANNNNTTC	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	498
PkrI	GCNGC	2 cut(s)	238, 484
PleI	GAGTC	2 cut(s)	12, 197
PpsI	GAGTC	2 cut(s)	12, 197
PshBI	ATTAAT	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
RseI	CAYNNNNRTG	2 cut(s)	257, 285
SalI	GTCGAC	1 cut(s)	6
SaqAI	TTAA	3 cut(s)	248, 321, 351
SatI	GCNGC	2 cut(s)	237, 483
Sau3AI	GATC	3 cut(s)	364, 394, 489
SchI	GAGTC	2 cut(s)	13, 197
SfaNI	GCATC	2 cut(s)	41, 280
SmiMI	CAYNNNNRTG	2 cut(s)	257, 285
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
SphI	GCATGC	1 cut(s)	508
Sse9I	AATT	3 cut(s)	245, 271, 535
SsiI	CCGC	2 cut(s)	446, 523
SspMI	CTAG	1 cut(s)	404
TaaI	ACNGT	3 cut(s)	12, 309, 427
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	2 cut(s)	7, 429
TaqII	GACCGA	1 cut(s)	476
TasI	AATT	3 cut(s)	245, 271, 535
TfiI	GAWTC	1 cut(s)	498
Tru1I	TTAA	3 cut(s)	248, 321, 351
Tru9I	TTAA	3 cut(s)	248, 321, 351
TscAI	CASTG	2 cut(s)	58, 169
TseI	GCWGC	2 cut(s)	236, 482
TspDTI	ATGAA	4 cut(s)	258, 297, 389, 463
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	2 cut(s)	58, 169
VspI	ATTAAT	1 cut(s)	248
XapI	RAATTY	1 cut(s)	271
XceI	RCATGY	2 cut(s)	446, 508
XmiI	GTMKAC	1 cut(s)	7
XmnI	GAANNNNTTC	1 cut(s)	470
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.