Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003892.1

Orthogroup ID

OG0008820

Physical Location & Seq

Genomic Coordinates Reverse (-)

93868 .. 96490

Gene Structure 2623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003892.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgttacagcttccatttccaaaggtggcagtagtatcagtgtttcagaacctgtttggagctcatggacgttccagtagccgagtttatgagatacttcagaacaatgtgagggtgtcatccagtagaaactcagtttctggatttagaactttttgcactggccaagatttgtcaacaaagaagtgtgtgccgtgcacctcaaaggatatgcgacctatgactgaagaatcagcaagtaatttactcccaaaggtggatggatggaatatggtgagtgaaagtggtttgttgaaactgaataagtcatggagagttaaatccttcacaaaaggattggaaatgtttaagctcatagctgatgttgcagaagcagaaggtcatcatcccgaccttcatcttgttggatggaacaatgtgaccattgagatctggacacatgcagttggtggattgactgagaatgatttcatactggctgctaaaatcaatgcacttgatatgcaaaacctgatgaggcggaaagctactgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008124 GO:0016829 GO:0016835 GO:0016836 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Pterin_4a

Protein Analysis

178

Amino Acids

19.84

Weight (kDa)

9.07

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29810 AT1G29810
fragaria_vesca	FvH4_3g06270
malus_domestica	MD05G1290700.v1.1 MD16G1203200.v1.1
prunus_persica	Prupe.4G075000_v2.0.a1 Prupe.4G075000_v2.0.a1 Prupe.4G075000_v2.0.a1 Prupe.4G075000_v2.0.a1 Prupe.4G075000_v2.0.a1
pyrus_communis	pycom05g26730 pycom10g22260
rosa_chinensis	RchiOBHm_Chr5g0013041
rosa_laevigata	RLG00000031979
rosa_multiflora	Rmu_sc0003892.1_g000018 Rmu_sc0037731.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063530
rosa_rugosa	Rorug05G0006800
rosa_samantha	Rh5AG100900 Rh5BG097400 Rh5CG109500 Rh5DG096300
rosa_wichuraiana	Rw5G008810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	520
AcoI	YGGCCR	1 cut(s)	163
AcuI	CTGAAG	2 cut(s)	83, 246
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	1 cut(s)	295
AluBI	AGCT	5 cut(s)	10, 62, 352, 359, 527
AluI	AGCT	5 cut(s)	10, 62, 352, 359, 527
Alw21I	GWGCWC	2 cut(s)	64, 200
Alw44I	GTGCAC	1 cut(s)	196
AlwNI	CAGNNNCTG	2 cut(s)	52, 140
AoxI	GGCC	1 cut(s)	163
ApaLI	GTGCAC	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	479
Asp700I	GAANNNNTTC	1 cut(s)	467
AsuHPI	GGTGA	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	200
BalI	TGGCCA	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	64
Bbv12I	GWGCWC	2 cut(s)	64, 200
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	3 cut(s)	254, 258, 402
BceAI	ACGGC	1 cut(s)	178
BglII	AGATCT	1 cut(s)	429
BisI	GCNGC	1 cut(s)	480
BlsI	GCNGC	1 cut(s)	481
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse1I	ACTGG	4 cut(s)	75, 123, 166, 480
BseGI	GGATG	5 cut(s)	119, 265, 269, 385, 413
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMII	CTCAG	2 cut(s)	147, 450
BseNI	ACTGG	4 cut(s)	75, 123, 166, 480
BseSI	GKGCMC	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	466
BshFI	GGCC	1 cut(s)	165
BsiHKAI	GWGCWC	2 cut(s)	64, 200
BslI	CCNNNNNNNGG	1 cut(s)	256
BsnI	GGCC	1 cut(s)	165
Bsp1286I	GDGCHC	2 cut(s)	64, 200
Bsp143I	GATC	1 cut(s)	429
BspACI	CCGC	1 cut(s)	520
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	2 cut(s)	146, 451
BsrI	ACTGG	4 cut(s)	75, 123, 166, 480
BssMI	GATC	1 cut(s)	429
BstDEI	CTNAG	2 cut(s)	133, 459
BstF5I	GGATG	5 cut(s)	119, 265, 269, 385, 413
BstKTI	GATC	1 cut(s)	432
BstMBI	GATC	1 cut(s)	429
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNSI	RCATGY	1 cut(s)	443
BstSLI	GKGCMC	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	466
BstX2I	RGATCY	1 cut(s)	429
BstYI	RGATCY	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	165
BtsCI	GGATG	5 cut(s)	119, 265, 269, 385, 413
BtsIMutI	CAGTG	2 cut(s)	45, 159
CaiI	CAGNNNCTG	2 cut(s)	52, 140
CviAII	CATG	3 cut(s)	65, 309, 440
CviJI	RGCY	8 cut(s)	10, 62, 81, 165, 352, 359, 479, 527
CviKI_1	RGCY	8 cut(s)	10, 62, 81, 165, 352, 359, 479, 527
DdeI	CTNAG	2 cut(s)	133, 459
DpnI	GATC	1 cut(s)	431
DpnII	GATC	1 cut(s)	429
EaeI	YGGCCR	1 cut(s)	163
EciI	GGCGGA	1 cut(s)	535
Ecl136II	GAGCTC	1 cut(s)	62
Eco24I	GRGCYC	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	62
Eco57I	CTGAAG	2 cut(s)	83, 246
EcoICRI	GAGCTC	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	64
FaeI	CATG	3 cut(s)	68, 312, 443
FatI	CATG	3 cut(s)	64, 308, 439
Fnu4HI	GCNGC	1 cut(s)	480
FokI	GGATG	5 cut(s)	106, 272, 276, 372, 420
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	480
GluI	GCNGC	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	165
Hin1II	CATG	3 cut(s)	68, 312, 443
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HinfI	GANTC	1 cut(s)	230
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	2 cut(s)	177, 198
Hpy188I	TCNGA	2 cut(s)	48, 102
Hpy188III	TCNNGA	3 cut(s)	141, 389, 433
Hpy8I	GTNNAC	2 cut(s)	177, 198
HpyAV	CCTTC	3 cut(s)	334, 371, 404
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	6 cut(s)	159, 198, 368, 443, 494, 505
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	2 cut(s)	133, 459
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	3 cut(s)	68, 312, 443
Kzo9I	GATC	1 cut(s)	429
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	8 cut(s)	65, 88, 126, 136, 147, 418, 461, 524
Lsp1109I	GCAGC	1 cut(s)	466
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	2 cut(s)	3, 418
MalI	GATC	1 cut(s)	431
MboI	GATC	1 cut(s)	429
MboII	GAAGA	1 cut(s)	239
MflI	RGATCY	1 cut(s)	429
MhlI	GDGCHC	2 cut(s)	64, 200
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	1 cut(s)	241
MluNI	TGGCCA	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	3 cut(s)	105, 211, 510
Mox20I	TGGCCA	1 cut(s)	165
MroXI	GAANNNNTTC	1 cut(s)	467
MscI	TGGCCA	1 cut(s)	165
MseI	TTAA	2 cut(s)	318, 348
Msp20I	TGGCCA	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	365
NdeII	GATC	1 cut(s)	429
NlaIII	CATG	3 cut(s)	68, 312, 443
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	418
NspI	RCATGY	1 cut(s)	443
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	481
Psp124BI	GAGCTC	1 cut(s)	64
PstNI	CAGNNNCTG	2 cut(s)	52, 140
PsuI	RGATCY	1 cut(s)	429
SacI	GAGCTC	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	318, 348
SatI	GCNGC	1 cut(s)	480
Sau3AI	GATC	1 cut(s)	429
SduI	GDGCHC	2 cut(s)	64, 200
Sse9I	AATT	1 cut(s)	241
SsiI	CCGC	1 cut(s)	520
SstI	GAGCTC	1 cut(s)	64
TaiI	ACGT	1 cut(s)	73
TasI	AATT	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	2 cut(s)	318, 348
Tru9I	TTAA	2 cut(s)	318, 348
TscAI	CASTG	2 cut(s)	45, 166
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	1 cut(s)	479
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	2 cut(s)	386, 460
TspRI	CASTG	2 cut(s)	45, 166
VneI	GTGCAC	1 cut(s)	196
XceI	RCATGY	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.