Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008820

Physical Location & Seq

Genomic Coordinates Forward (+)

8849074 .. 8851985

Gene Structure 2912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG096300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAGTCGGATGTTACAGCTTCCATTTCCAAAGGTGGCAGTAGTATCAGTGTTTCAGAACCTGTTTGGAGCTCATGGACGTTCCAGTAGCCGAGTTTATGAGATACTTCAGAACAATGTGAGGGTGTCATCCAGTAGAAACTCAGTTTCTGGATTTAGAACTTTTTGCACTGGCCAAGATTTGTCAACAAAGAAGTGTGTGCCGTGCACCTCAAAGGATATGCGACCTATGACTGAAGAATCAGCAAGTAATTTACTCCCAAAGGTGGATGGATGGAATATGGTGAGTGAAAGTGGTTTGTTGAAACTGAATAAGTCATGGAGAGTTAAATCCTTCACAAAAGGATTGGAAATGTTTAAGCTCATAGCTGATGTTGCAGAAGCAGAAGGTCATCATCCCGACCTTCATCTTGTTGGATGGAACAATGTGACCATTGAGATCTGGACACATGCAGTTGGTGGATTGACTGAGAATGATTTCATACTGGCTGCTAAAATCAATGCACTTGATATGCAAAACCTGATGAGGCGGAAAGCTACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008124 GO:0016829 GO:0016835 GO:0016836 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Pterin_4a

Protein Analysis

181

Amino Acids

20.21

Weight (kDa)

9.27

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pterin_4a	PF01329	76 - 169	2e-26	Pterin 4 alpha carbinolamine dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29810 AT1G29810
fragaria_vesca	FvH4_3g06270
malus_domestica	MD05G1290700.v1.1 MD16G1203200.v1.1
prunus_persica	Prupe.4G075000_v2.0.a1 Prupe.4G075000_v2.0.a1 Prupe.4G075000_v2.0.a1 Prupe.4G075000_v2.0.a1 Prupe.4G075000_v2.0.a1
pyrus_communis	pycom05g26730 pycom10g22260
rosa_chinensis	RchiOBHm_Chr5g0013041
rosa_laevigata	RLG00000031979
rosa_multiflora	Rmu_sc0003892.1_g000018 Rmu_sc0037731.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063530
rosa_rugosa	Rorug05G0006800
rosa_samantha	Rh5AG100900 Rh5BG097400 Rh5CG109500 Rh5DG096300
rosa_wichuraiana	Rw5G008810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	529
AcoI	YGGCCR	1 cut(s)	172
AcuI	CTGAAG	2 cut(s)	92, 255
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	1 cut(s)	304
AluBI	AGCT	5 cut(s)	19, 71, 361, 368, 536
AluI	AGCT	5 cut(s)	19, 71, 361, 368, 536
Alw21I	GWGCWC	2 cut(s)	73, 209
Alw44I	GTGCAC	1 cut(s)	205
AlwNI	CAGNNNCTG	2 cut(s)	61, 149
AoxI	GGCC	1 cut(s)	172
ApaLI	GTGCAC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	488
Asp700I	GAANNNNTTC	1 cut(s)	476
AsuHPI	GGTGA	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	73
Bbv12I	GWGCWC	2 cut(s)	73, 209
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	3 cut(s)	263, 267, 411
BceAI	ACGGC	1 cut(s)	187
BglII	AGATCT	1 cut(s)	438
BisI	GCNGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	4 cut(s)	84, 132, 175, 489
BseGI	GGATG	6 cut(s)	15, 128, 274, 278, 394, 422
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	2 cut(s)	156, 459
BseNI	ACTGG	4 cut(s)	84, 132, 175, 489
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	475
BshFI	GGCC	1 cut(s)	174
BsiHKAI	GWGCWC	2 cut(s)	73, 209
BslI	CCNNNNNNNGG	1 cut(s)	265
BsnI	GGCC	1 cut(s)	174
Bsp1286I	GDGCHC	2 cut(s)	73, 209
Bsp143I	GATC	1 cut(s)	438
BspACI	CCGC	1 cut(s)	529
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	2 cut(s)	155, 460
BsrI	ACTGG	4 cut(s)	84, 132, 175, 489
BssMI	GATC	1 cut(s)	438
BstDEI	CTNAG	2 cut(s)	142, 468
BstF5I	GGATG	6 cut(s)	15, 128, 274, 278, 394, 422
BstKTI	GATC	1 cut(s)	441
BstMBI	GATC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNSI	RCATGY	1 cut(s)	452
BstSLI	GKGCMC	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	475
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	6 cut(s)	15, 128, 274, 278, 394, 422
BtsIMutI	CAGTG	2 cut(s)	54, 168
CaiI	CAGNNNCTG	2 cut(s)	61, 149
CviAII	CATG	3 cut(s)	74, 318, 449
CviJI	RGCY	8 cut(s)	19, 71, 90, 174, 361, 368, 488, 536
CviKI_1	RGCY	8 cut(s)	19, 71, 90, 174, 361, 368, 488, 536
DdeI	CTNAG	2 cut(s)	142, 468
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
EaeI	YGGCCR	1 cut(s)	172
EciI	GGCGGA	1 cut(s)	544
Ecl136II	GAGCTC	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	71
Eco57I	CTGAAG	2 cut(s)	92, 255
EcoICRI	GAGCTC	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	73
FaeI	CATG	3 cut(s)	77, 321, 452
FatI	CATG	3 cut(s)	73, 317, 448
Fnu4HI	GCNGC	1 cut(s)	489
FokI	GGATG	6 cut(s)	22, 115, 281, 285, 381, 429
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	1 cut(s)	489
GluI	GCNGC	1 cut(s)	489
HaeIII	GGCC	1 cut(s)	174
Hin1II	CATG	3 cut(s)	77, 321, 452
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	2 cut(s)	4, 239
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	2 cut(s)	186, 207
Hpy188I	TCNGA	3 cut(s)	9, 57, 111
Hpy188III	TCNNGA	3 cut(s)	150, 398, 442
Hpy8I	GTNNAC	2 cut(s)	186, 207
HpyAV	CCTTC	3 cut(s)	343, 380, 413
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	6 cut(s)	168, 207, 377, 452, 503, 514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	2 cut(s)	142, 468
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	3 cut(s)	77, 321, 452
Kzo9I	GATC	1 cut(s)	438
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	8 cut(s)	74, 97, 135, 145, 156, 427, 470, 533
Lsp1109I	GCAGC	1 cut(s)	475
MaeII	ACGT	1 cut(s)	79
MaeIII	GTNAC	2 cut(s)	12, 427
MalI	GATC	1 cut(s)	440
MboI	GATC	1 cut(s)	438
MboII	GAAGA	1 cut(s)	248
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	2 cut(s)	73, 209
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	1 cut(s)	250
MluNI	TGGCCA	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	3 cut(s)	114, 220, 519
Mox20I	TGGCCA	1 cut(s)	174
MroXI	GAANNNNTTC	1 cut(s)	476
MscI	TGGCCA	1 cut(s)	174
MseI	TTAA	2 cut(s)	327, 357
Msp20I	TGGCCA	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeII	GATC	1 cut(s)	438
NlaIII	CATG	3 cut(s)	77, 321, 452
NmeAIII	GCCGAG	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	427
NspI	RCATGY	1 cut(s)	452
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	490
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	73
PstNI	CAGNNNCTG	2 cut(s)	61, 149
PsuI	RGATCY	1 cut(s)	438
SacI	GAGCTC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	327, 357
SatI	GCNGC	1 cut(s)	489
Sau3AI	GATC	1 cut(s)	438
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	2 cut(s)	73, 209
Sse9I	AATT	1 cut(s)	250
SsiI	CCGC	1 cut(s)	529
SstI	GAGCTC	1 cut(s)	73
TaiI	ACGT	1 cut(s)	82
TasI	AATT	1 cut(s)	250
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	2 cut(s)	327, 357
Tru9I	TTAA	2 cut(s)	327, 357
TscAI	CASTG	2 cut(s)	54, 175
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	1 cut(s)	488
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	395, 469
TspRI	CASTG	2 cut(s)	54, 175
VneI	GTGCAC	1 cut(s)	205
XceI	RCATGY	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.