Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010642

Physical Location & Seq

Genomic Coordinates Forward (+)

28491350 .. 28496720

Gene Structure 5371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27510.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2964 bp

ATGATGCAGTCTGTTGCTCCTCCGTGCAATGCCTGCGGCGAGCAGGTGGGGCTTGATGCTAATGGGGAGATTTTCGTGGCGTGCCACGAGTGTAATTTCCCCGTTTGCAAGGCTTGTTTCGATGATGATGTCAAGGCCGGGCGTAAACTCTGCTTAAAGTGTGGCATTCCCTATGACGATAGCTCGTTGGCGGACTATGAAACAAAGGTCTCTGGCACTCGATCCACAATGGAGGCTCACCTGAATAGTTCTCAGCAGGATACCGGAATTCATGCTAGGCATATCAGCAGTGTGTCTACACTGGATAGTGAATTAAACGATGAATATGGCAATCCAATTTGGAAGAACAGAGTGGAGAGTTGGAAGGATAAGAAGGATAAAAAGAACAAGAAGAAAAAGGATACGCCTAAGGGGGAAAAGGAGGCTCAAATTCCACCTGAGCAGCAGATGACAGAGGAATATTCCTCAGAGGCTGCGGAACCACTTTCAACTGTTGTTCCACTCCCACCCAACAGAATCACACCATACAGAACTGTAATAATTATGCGATTGATCGATCCCATTCTTGCCCTTTTCTTCCATTATCGAGTAACAAATCCTGTTGATAGCGCTTATGGTCTATGGTTCACTTCTATCATATGTGAGATCTGGTTCGCTTTTTCATGGGTGTTGGATCAGTTTCCTAAGTGGTCTCCAGTTAATCGGATTACATTTACTGATAGGTTATCTGCCAGGTTTGAAAGAGAGGGTGAGCCCTCTGAGCTTGCTGCAGTGGATTTCTTCGTGAGTACAGTTGATCCGTTAAAAGAACCGCCCCTGATCACTGCCAATACTGTTCTTTCTATCCTTGCTGTAGACTACCCCGTGGATAAAGTTTCTTGCTATGTGTCTGATGATGGTGCTGCCATGCTTACTTTTGAATCTCTTGCCGAGACATCTGAATTTGCAAGGAAGTGGGTACCATTCTGCAAGAATTTTTCGATTGAACCACGTGCACCTGAGTTTTACTTCTCACAAAAGATTGACTACTTGAAGGATAAAGTGCAACCATCTTTTGTGAAGGAGCGCAGAGCGATGAAAAGAGATTATGAAGAATTCAAAGTTCGAATGAATGCTTTAGTTGCAAAGGCTCAAAAAACACCAGAAGAAGGATGGACTATGCAAGACGGAACACCTTGGCCAGGAAATAACCCACGTGACCATCCCGGAATGATTCAGGTTTTCCTGGGACACAGTGGCGCCTATGACATTGAGGGAAATGAACTTCCTCGATTGGTTTATGTCTCGAGAGAGAAGAGACCCGGCTATCCACATCACAAGAAAGCTGGTGCTGAAAATGCTCTGGTAAGGGTGTCTGCAGTTCTCACAAATGCCCCATACATCCTCAATCTTGACTGCGATCACTACGTTAACAATAGCCAGGCAATTCGTGAGGCAATGTGTTTCTTGATGGACCCGCAAGTTGGTCGAGAAGTATGCTATGTGCAGTTTCCTCAGAGGTTTGATGGCATTGATCGCAGTGATCGATATGCCAACCGCAACACAGTTTTCTTTGATGTTAACATGAAAGGACTGGATGGAATTCAAGGTCCAGTATATGTGGGGACAGGATGTTGTTTCAATAGGCAAGCACTTTATGGCTACGGTCCTCCTTCTATGCCCAACTTACCCAAGGCTGCTTCCTCATCCTCCTGCTCATGGTGTGGTTGCTGCTCTTGTTGCTGCCCCTCTAAGAAGCCGTCAAAAGATCTGTCAGAGGCTTACCGAGATGCAAAACGCGAGGAGCTTGATGCTGCCATATTCAACCTCCGGGAGATTGAGAACTATGATGAGTTTGAGAGGTCAATGTTGATCTCGCAGACGAGCTTTGAGAAAACTTTTGGATTATCATCTGTATTCATAGAGTCTACACTAATGGAGAACGGAGGAGTGGCCGAATCTTCCAACCCATCAACTTTGATCAGGGAGGCAATTCATGTCATTAGTTGCGGTTATGAAGAGAAGACCGCGTGGGGAAAAGAAATTGGTTGGATATATGGATCGATCACGGAGGATATCTTAACCGGTTTCAAGATGCATTGCCGTGGATGGAGGTCAATTTACTGCATGCCCTTGAGGCCTGCATTCAAGGGGTCAGCTCCCATTAACCTTTCTGATCGACTGCACCAAGTTCTTCGGTGGGCACTTGGTTCAGTGGAAATTTTCCTCAGTAGACATTGTCCTCTCTGGTACGGGTTTGCAGGAGGCCGCCTCAAACTGCTTCAGAGAATGGCATATATCAACACTATTGTTTACCCCTTCACATCCCTCCCTCTCGTTGCTTACTGTACACTCCCTGCAATATGCCTTCTCACAGGAAAATTCATCATCCCAACGCTTACAAACCTGGCAAGTGCCCTGTTTCTTGGCCTCTTCATCTCCATCATTGCTACAAGTGTGCTTGAGTTGCGGTGGAGTGGAGTCCGCATTGAGGACTTATGGCGTAACGAGCAGTTCTGGGTGATCGGGGGTGTTTCAGCCCATCTCTTCGCCGTCTTCCAAGGTTTCTTAAAGATGTTGGCCGGAATTGACACCAACTTCACCGTCACAACCAAATCAGCCGAGGACACAGAATTCGGAGAGCTCTATCTGATCAAATGGACCACACTTTTGATTCCCCCCACTACACTCCTCATTATAAACATGGTTGGTGTTGTAGCTGGATTTTCGGACGCCCTTAACAAGGGATACGAAGCTTGGGGGCCACTTTTCGGGAAGGTTTTCTTCGCCTTCTGGGTGATTCTCCATCTCTATCCCTTCCTCAAAGGTCTCATGGGACGCCAAAACCGGACTCCAACCATCGTTGTTTTGTGGTCAGTGCTCTTGGCCTCTGTCTTCTCTCTTGTTTGGGTGAAGATAAATCCCTTTGTGAGCAAAGTGGACAGCTCAACGCTTGCTGAAAGCTGCATTTCCATAGACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0006970 GO:0007049 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0010035 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0016760 GO:0022402 GO:0030243 GO:0030244 GO:0030312 GO:0033692 GO:0034637 GO:0034645 GO:0035251 GO:0042221 GO:0042546 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0050832 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0051704 GO:0051707 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:1901576 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt WD40 zf-UDP

Protein Analysis

988

Amino Acids

111.05

Weight (kDa)

6.07

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18780
fragaria_vesca	FvH4_3g07420 FvH4_3g07420
malus_domestica	MD05G1296600.v1.1 MD10G1276500.v1.1
prunus_persica	Prupe.4G065700_v2.0.a1 Prupe.4G065700_v2.0.a1
pyrus_communis	pycom05g27510 pycom10g23090
rosa_chinensis	RchiOBHm_Chr5g0011441
rosa_laevigata	RLG00000031835
rosa_multiflora	Rmu_co8341655.1_g000001 Rmu_sc0009001.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065000
rosa_rugosa	Rorug04G0457000
rosa_samantha	Rh5AG088900 Rh5BG084100 Rh5CG097600 Rh5DG084100
rosa_wichuraiana	Rw5G007740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2678
AarI	CACCTGC	1 cut(s)	34
Acc36I	ACCTGC	1 cut(s)	34
Acc65I	GGTACC	1 cut(s)	958
AccB1I	GGYRCC	2 cut(s)	958, 1238
AccI	GTMKAC	4 cut(s)	296, 855, 1907, 2212
AccII	CGCG	2 cut(s)	1779, 2009
AclWI	GGATC	5 cut(s)	216, 551, 681, 791, 2047
AcoI	YGGCCR	3 cut(s)	1178, 1932, 2559
AcsI	RAATTY	9 cut(s)	267, 429, 941, 973, 1094, 1581, 2199, 2360, 2612
AcuI	CTGAAG	1 cut(s)	2246
AcvI	CACGTG	2 cut(s)	992, 1196
AcyI	GRCGYC	3 cut(s)	1239, 2712, 2818
AfaI	GTAC	4 cut(s)	790, 960, 2231, 2329
AfeI	AGCGCT	1 cut(s)	610
AfiI	CCNNNNNNNGG	7 cut(s)	1148, 1181, 1463, 1698, 2470, 2722, 2750
AgeI	ACCGGT	1 cut(s)	2063
AjnI	CCWGG	5 cut(s)	731, 1180, 1224, 1419, 2385
Alw21I	GWGCWC	3 cut(s)	997, 2625, 2862
Alw26I	GTCTC	6 cut(s)	214, 696, 926, 1288, 1291, 2813
Alw44I	GTGCAC	1 cut(s)	993
AlwI	GGATC	5 cut(s)	216, 551, 681, 791, 2047
AlwNI	CAGNNNCTG	1 cut(s)	473
Ama87I	CYCGRG	1 cut(s)	1285
Aor51HI	AGCGCT	1 cut(s)	610
AoxI	GGCC	9 cut(s)	135, 1178, 1932, 2117, 2245, 2407, 2559, 2741, 2865
ApaLI	GTGCAC	1 cut(s)	993
ApeKI	GCWGC	9 cut(s)	442, 473, 767, 902, 1676, 1710, 1722, 1793, 2943
ApoI	RAATTY	9 cut(s)	267, 429, 941, 973, 1094, 1581, 2199, 2360, 2612
ArsI	GACNNNNNNTTYG	6 cut(s)	1736, 1768, 2597, 2629, 2632, 2664
AsiGI	ACCGGT	1 cut(s)	2063
Asp700I	GAANNNNTTC	1 cut(s)	2759
Asp718I	GGTACC	1 cut(s)	958
AspLEI	GCGC	3 cut(s)	611, 1068, 1241
AspS9I	GGNCC	5 cut(s)	1453, 1589, 1646, 2640, 2741
AsuC2I	CCSGG	4 cut(s)	139, 1206, 1302, 1811
AsuHPI	GGTGA	6 cut(s)	230, 761, 2512, 2572, 2788, 2902
AsuII	TTCGAA	1 cut(s)	1105
AvaI	CYCGRG	1 cut(s)	1285
AvaII	GGWCC	4 cut(s)	1453, 1589, 1646, 2640
AxyI	CCTNAGG	1 cut(s)	408
BaeGI	GKGCMC	3 cut(s)	997, 2185, 2398
BalI	TGGCCA	1 cut(s)	1180
BanI	GGYRCC	2 cut(s)	958, 1238
BanII	GRGCYC	2 cut(s)	756, 2625
BauI	CACGAG	1 cut(s)	86
BbrPI	CACGTG	2 cut(s)	992, 1196
BbsI	GAAGAC	3 cut(s)	2009, 2527, 2866
Bbv12I	GWGCWC	3 cut(s)	997, 2625, 2862
BbvI	GCAGC	9 cut(s)	454, 460, 754, 889, 1663, 1697, 1709, 1780, 2930
BceAI	ACGGC	3 cut(s)	1723, 2067, 2516
BcgI	CGANNNNNNTGC	4 cut(s)	1448, 1458, 1482, 1492
BciT130I	CCWGG	5 cut(s)	733, 1182, 1226, 1421, 2387
BciVI	GTATCC	3 cut(s)	253, 394, 2720
BclI	TGATCA	3 cut(s)	819, 1959, 2631
BcnI	CCSGG	4 cut(s)	139, 1206, 1302, 1811
BcoDI	GTCTC	6 cut(s)	214, 696, 926, 1288, 1291, 2813
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	3 cut(s)	768, 852, 1356
BfoI	RGCGCY	2 cut(s)	612, 1242
BfuAI	ACCTGC	1 cut(s)	34
BfuI	GTATCC	3 cut(s)	253, 394, 2720
BglI	GCCNNNNNGGC	1 cut(s)	2116
BglII	AGATCT	2 cut(s)	645, 1747
Bme1390I	CCNGG	9 cut(s)	139, 733, 1182, 1206, 1226, 1302, 1421, 1811, 2387
Bme18I	GGWCC	4 cut(s)	1453, 1589, 1646, 2640
BmeT110I	CYCGRG	1 cut(s)	1285
BmgT120I	GGNCC	5 cut(s)	1453, 1589, 1646, 2640, 2741
BmiI	GGNNCC	5 cut(s)	480, 960, 1240, 1455, 2742
BmrFI	CCNGG	9 cut(s)	139, 733, 1182, 1206, 1226, 1302, 1421, 1811, 2387
BmsI	GCATC	4 cut(s)	46, 1759, 1780, 2064
BpiI	GAAGAC	3 cut(s)	2009, 2527, 2866
BplI	GAGNNNNNCTC	2 cut(s)	2235, 2267
BpmI	CTGGAG	1 cut(s)	678
Bpu10I	CCTNAGC	1 cut(s)	438
Bpu14I	TTCGAA	1 cut(s)	1105
BpuEI	CTTGAG	2 cut(s)	2134, 2462
BpuMI	CCSGG	4 cut(s)	139, 1206, 1302, 1811
Bsa29I	ATCGAT	3 cut(s)	555, 1525, 2042
BsaAI	YACGTR	2 cut(s)	992, 1196
BsaBI	GATNNNNATC	1 cut(s)	1888
BsaHI	GRCGYC	3 cut(s)	1239, 2712, 2818
BsaI	GGTCTC	4 cut(s)	214, 696, 1291, 2813
BsaJI	CCNNGG	7 cut(s)	864, 1175, 1225, 1671, 2083, 2539, 2601
BsaWI	WCCGGW	3 cut(s)	263, 2063, 2826
Bsc4I	CCNNNNNNNGG	7 cut(s)	1148, 1181, 1463, 1698, 2470, 2722, 2750
Bse118I	RCCGGY	1 cut(s)	2063
Bse1I	ACTGG	4 cut(s)	306, 695, 1578, 1592
Bse21I	CCTNAGG	1 cut(s)	408
Bse3DI	GCAATG	4 cut(s)	34, 1443, 2077, 2424
Bse8I	GATNNNNATC	1 cut(s)	1888
BseBI	CCWGG	5 cut(s)	733, 1182, 1226, 1421, 2387
BseCI	ATCGAT	3 cut(s)	555, 1525, 2042
BseDI	CCNNGG	7 cut(s)	864, 1175, 1225, 1671, 2083, 2539, 2601
BseGI	GGATG	9 cut(s)	1157, 1201, 1380, 1582, 1616, 1685, 2093, 2303, 2367
BseJI	GATNNNNATC	1 cut(s)	1888
BseLI	CCNNNNNNNGG	7 cut(s)	1148, 1181, 1463, 1698, 2470, 2722, 2750
BseMI	GCAATG	4 cut(s)	34, 1443, 2077, 2424
BseMII	CTCAG	7 cut(s)	266, 429, 480, 750, 990, 1508, 2221
BseNI	ACTGG	4 cut(s)	306, 695, 1578, 1592
BseRI	GAGGAG	4 cut(s)	9, 1796, 1941, 2660
BseSI	GKGCMC	3 cut(s)	997, 2185, 2398
BseXI	GCAGC	9 cut(s)	454, 460, 754, 889, 1663, 1697, 1709, 1780, 2930
BsgI	GTGCAG	2 cut(s)	1505, 2147
Bsh1236I	CGCG	2 cut(s)	1779, 2009
BshFI	GGCC	9 cut(s)	137, 1180, 1934, 2119, 2247, 2409, 2561, 2743, 2867
BshNI	GGYRCC	2 cut(s)	958, 1238
BshTI	ACCGGT	1 cut(s)	2063
BshVI	ATCGAT	3 cut(s)	555, 1525, 2042
BsiHKAI	GWGCWC	3 cut(s)	997, 2625, 2862
BsiHKCI	CYCGRG	1 cut(s)	1285
BsiSI	CCGG	8 cut(s)	138, 264, 1206, 1302, 1810, 2064, 2562, 2827
BslFI	GGGAC	3 cut(s)	1242, 1618, 2829
BslI	CCNNNNNNNGG	7 cut(s)	1148, 1181, 1463, 1698, 2470, 2722, 2750
BsmAI	GTCTC	6 cut(s)	214, 696, 926, 1288, 1291, 2813
BsmFI	GGGAC	3 cut(s)	1242, 1618, 2829
BsmI	GAATGC	3 cut(s)	165, 1117, 2123
BsnI	GGCC	9 cut(s)	137, 1180, 1934, 2119, 2247, 2409, 2561, 2743, 2867
Bso31I	GGTCTC	4 cut(s)	214, 696, 1291, 2813
BsoBI	CYCGRG	1 cut(s)	1285
Bsp119I	TTCGAA	1 cut(s)	1105
Bsp1286I	GDGCHC	6 cut(s)	756, 997, 2185, 2398, 2625, 2862
Bsp1407I	TGTACA	1 cut(s)	2327
BspANI	GGCC	9 cut(s)	137, 1180, 1934, 2119, 2247, 2409, 2561, 2743, 2867
BspCNI	CTCAG	7 cut(s)	265, 430, 479, 751, 991, 1507, 2220
BspDI	ATCGAT	3 cut(s)	555, 1525, 2042
BspFNI	CGCG	2 cut(s)	1779, 2009
BspLI	GGNNCC	5 cut(s)	480, 960, 1240, 1455, 2742
BspMAI	CTGCAG	2 cut(s)	772, 1360
BspMI	ACCTGC	1 cut(s)	34
BspPI	GGATC	5 cut(s)	216, 551, 681, 791, 2047
BspT104I	TTCGAA	1 cut(s)	1105
BspT107I	GGYRCC	2 cut(s)	958, 1238
BspTNI	GGTCTC	4 cut(s)	214, 696, 1291, 2813
BsrDI	GCAATG	4 cut(s)	34, 1443, 2077, 2424
BsrFI	RCCGGY	1 cut(s)	2063
BsrGI	TGTACA	1 cut(s)	2327
BsrI	ACTGG	4 cut(s)	306, 695, 1578, 1592
BssAI	RCCGGY	1 cut(s)	2063
BssECI	CCNNGG	7 cut(s)	864, 1175, 1225, 1671, 2083, 2539, 2601
BssNI	GRCGYC	3 cut(s)	1239, 2712, 2818
BssSI	CACGAG	1 cut(s)	86
BssT1I	CCWWGG	3 cut(s)	1175, 1671, 2539
Bst2BI	CACGAG	1 cut(s)	86
Bst2UI	CCWGG	5 cut(s)	733, 1182, 1226, 1421, 2387
Bst4CI	ACNGT	9 cut(s)	493, 535, 793, 835, 1235, 1546, 1646, 2327, 2584
Bst6I	CTCTTC	4 cut(s)	1289, 1992, 2417, 2531
BstACI	GRCGYC	3 cut(s)	1239, 2712, 2818
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstAUI	TGTACA	1 cut(s)	2327
BstBAI	YACGTR	2 cut(s)	992, 1196
BstBI	TTCGAA	1 cut(s)	1105
BstC8I	GCNNGC	8 cut(s)	34, 41, 82, 765, 1629, 2108, 2121, 2934
BstDSI	CCRYGG	2 cut(s)	864, 2083
BstENI	CCTNNNNNAGG	2 cut(s)	1179, 2720
BstF5I	GGATG	9 cut(s)	1157, 1201, 1380, 1582, 1616, 1685, 2093, 2303, 2367
BstFNI	CGCG	2 cut(s)	1779, 2009
BstH2I	RGCGCY	2 cut(s)	612, 1242
BstHHI	GCGC	3 cut(s)	611, 1068, 1241
BstMAI	GTCTC	6 cut(s)	214, 696, 926, 1288, 1291, 2813
BstNI	CCWGG	5 cut(s)	733, 1182, 1226, 1421, 2387
BstNSI	RCATGY	1 cut(s)	2110
BstSCI	CCNGG	9 cut(s)	137, 731, 1180, 1204, 1224, 1300, 1419, 1809, 2385
BstSFI	CTRYAG	3 cut(s)	768, 852, 1356
BstSLI	GKGCMC	3 cut(s)	997, 2185, 2398
BstUI	CGCG	2 cut(s)	1779, 2009
BstV1I	GCAGC	9 cut(s)	454, 460, 754, 889, 1663, 1697, 1709, 1780, 2930
BstV2I	GAAGAC	3 cut(s)	2009, 2527, 2866
BstX2I	RGATCY	2 cut(s)	645, 1747
BstYI	RGATCY	2 cut(s)	645, 1747
Bsu15I	ATCGAT	3 cut(s)	555, 1525, 2042
Bsu36I	CCTNAGG	1 cut(s)	408
BsuI	GTATCC	3 cut(s)	253, 394, 2720
BsuRI	GGCC	9 cut(s)	137, 1180, 1934, 2119, 2247, 2409, 2561, 2743, 2867
BsuTUI	ATCGAT	3 cut(s)	555, 1525, 2042
BtgI	CCRYGG	2 cut(s)	864, 2083
BtgZI	GCGATG	1 cut(s)	1088
BtsCI	GGATG	9 cut(s)	1157, 1201, 1380, 1582, 1616, 1685, 2093, 2303, 2367
BtsI	GCAGTG	4 cut(s)	295, 777, 822, 1525
BtsIMutI	CAGTG	8 cut(s)	295, 299, 777, 822, 1240, 1525, 2199, 2862
BveI	ACCTGC	1 cut(s)	34
Cac8I	GCNNGC	8 cut(s)	34, 41, 82, 765, 1629, 2108, 2121, 2934
CaiI	CAGNNNCTG	1 cut(s)	473
CfoI	GCGC	3 cut(s)	611, 1068, 1241
Cfr10I	RCCGGY	1 cut(s)	2063
Cfr13I	GGNCC	5 cut(s)	1453, 1589, 1646, 2640, 2741
ClaI	ATCGAT	3 cut(s)	555, 1525, 2042
CseI	GACGC	2 cut(s)	2720, 2826
Csp6I	GTAC	4 cut(s)	789, 959, 2230, 2328
CspAI	ACCGGT	1 cut(s)	2063
CviAII	CATG	9 cut(s)	272, 663, 907, 1564, 1698, 1976, 2107, 2683, 2812
CviQI	GTAC	4 cut(s)	789, 959, 2230, 2328
DinI	GGCGCC	1 cut(s)	1240
EaeI	YGGCCR	3 cut(s)	1178, 1932, 2559
Eam1104I	CTCTTC	4 cut(s)	1289, 1992, 2417, 2531
EarI	CTCTTC	4 cut(s)	1289, 1992, 2417, 2531
EciI	GGCGGA	1 cut(s)	206
Ecl136II	GAGCTC	1 cut(s)	2623
Eco130I	CCWWGG	3 cut(s)	1175, 1671, 2539
Eco147I	AGGCCT	1 cut(s)	2119
Eco24I	GRGCYC	2 cut(s)	756, 2625
Eco31I	GGTCTC	4 cut(s)	214, 696, 1291, 2813
Eco32I	GATATC	1 cut(s)	2056
Eco47I	GGWCC	4 cut(s)	1453, 1589, 1646, 2640
Eco47III	AGCGCT	1 cut(s)	610
Eco53kI	GAGCTC	1 cut(s)	2623
Eco57I	CTGAAG	1 cut(s)	2246
Eco72I	CACGTG	2 cut(s)	992, 1196
Eco81I	CCTNAGG	1 cut(s)	408
Eco88I	CYCGRG	1 cut(s)	1285
EcoICRI	GAGCTC	1 cut(s)	2623
EcoNI	CCTNNNNNAGG	2 cut(s)	1179, 2720
EcoRI	GAATTC	4 cut(s)	267, 1094, 1581, 2612
EcoRII	CCWGG	5 cut(s)	731, 1180, 1224, 1419, 2385
EcoRV	GATATC	1 cut(s)	2056
EcoT14I	CCWWGG	3 cut(s)	1175, 1671, 2539
EcoT22I	ATGCAT	1 cut(s)	2079
EcoT38I	GRGCYC	2 cut(s)	756, 2625
EgeI	GGCGCC	1 cut(s)	1240
EheI	GGCGCC	1 cut(s)	1240
ErhI	CCWWGG	3 cut(s)	1175, 1671, 2539
FaeI	CATG	9 cut(s)	275, 666, 910, 1567, 1701, 1979, 2110, 2686, 2815
FalI	AAGNNNNNCTT	2 cut(s)	2747, 2779
FaqI	GGGAC	3 cut(s)	1242, 1618, 2829
FatI	CATG	9 cut(s)	271, 662, 906, 1563, 1697, 1975, 2106, 2682, 2811
FauI	CCCGC	1 cut(s)	1464
FauNDI	CATATG	1 cut(s)	638
FbaI	TGATCA	3 cut(s)	819, 1959, 2631
FblI	GTMKAC	4 cut(s)	296, 855, 1907, 2212
FokI	GGATG	9 cut(s)	1164, 1188, 1367, 1589, 1623, 1672, 2100, 2290, 2354
FriOI	GRGCYC	2 cut(s)	756, 2625
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	3 cut(s)	610, 1067, 1240
GsuI	CTGGAG	1 cut(s)	678
HaeII	RGCGCY	2 cut(s)	612, 1242
HaeIII	GGCC	9 cut(s)	137, 1180, 1934, 2119, 2247, 2409, 2561, 2743, 2867
HapII	CCGG	8 cut(s)	138, 264, 1206, 1302, 1810, 2064, 2562, 2827
HgaI	GACGC	2 cut(s)	2720, 2826
HhaI	GCGC	3 cut(s)	611, 1068, 1241
Hin1I	GRCGYC	3 cut(s)	1239, 2712, 2818
Hin1II	CATG	9 cut(s)	275, 666, 910, 1567, 1701, 1979, 2110, 2686, 2815
Hin6I	GCGC	3 cut(s)	609, 1066, 1239
HinP1I	GCGC	3 cut(s)	609, 1066, 1239
HincII	GTYRAC	2 cut(s)	1411, 1561
HindII	GTYRAC	2 cut(s)	1411, 1561
HindIII	AAGCTT	1 cut(s)	2733
HinfI	GANTC	9 cut(s)	516, 920, 1213, 1904, 1937, 2460, 2653, 2779, 2830
HpaI	GTTAAC	2 cut(s)	1411, 1561
HpaII	CCGG	8 cut(s)	138, 264, 1206, 1302, 1810, 2064, 2562, 2827
HphI	GGTGA	6 cut(s)	230, 761, 2512, 2572, 2788, 2902
Hpy188III	TCNNGA	9 cut(s)	784, 1285, 1287, 1391, 1430, 1447, 1469, 2071, 2752
HpyCH4III	ACNGT	9 cut(s)	493, 535, 793, 835, 1235, 1546, 1646, 2327, 2584
HpyCH4IV	ACGT	3 cut(s)	991, 1195, 1407
HpySE526I	ACGT	3 cut(s)	991, 1195, 1407
Hsp92I	GRCGYC	3 cut(s)	1239, 2712, 2818
Hsp92II	CATG	9 cut(s)	275, 666, 910, 1567, 1701, 1979, 2110, 2686, 2815
HspAI	GCGC	3 cut(s)	609, 1066, 1239
KasI	GGCGCC	1 cut(s)	1238
KpnI	GGTACC	1 cut(s)	962
Ksp22I	TGATCA	3 cut(s)	819, 1959, 2631
KspAI	GTTAAC	2 cut(s)	1411, 1561
LmnI	GCTCC	4 cut(s)	22, 1063, 1783, 2143
Lsp1109I	GCAGC	9 cut(s)	454, 460, 754, 889, 1663, 1697, 1709, 1780, 2930
LweI	GCATC	4 cut(s)	46, 1759, 1780, 2064
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	3 cut(s)	991, 1195, 1407
MaeIII	GTNAC	4 cut(s)	589, 1196, 2483, 2584
MflI	RGATCY	2 cut(s)	645, 1747
MhlI	GDGCHC	6 cut(s)	756, 997, 2185, 2398, 2625, 2862
MlsI	TGGCCA	1 cut(s)	1180
MluNI	TGGCCA	1 cut(s)	1180
Mly113I	GGCGCC	1 cut(s)	1239
MlyI	GAGTC	3 cut(s)	1913, 2469, 2824
MmeI	TCCRAC	5 cut(s)	341, 651, 1968, 2009, 2858
Mox20I	TGGCCA	1 cut(s)	1180
Mph1103I	ATGCAT	1 cut(s)	2079
MroXI	GAANNNNTTC	1 cut(s)	2759
MscI	TGGCCA	1 cut(s)	1180
MslI	CAYNNNNRTG	1 cut(s)	2082
Msp20I	TGGCCA	1 cut(s)	1180
MspI	CCGG	8 cut(s)	138, 264, 1206, 1302, 1810, 2064, 2562, 2827
MspR9I	CCNGG	9 cut(s)	139, 733, 1182, 1206, 1226, 1302, 1421, 1811, 2387
Mva1269I	GAATGC	3 cut(s)	165, 1117, 2123
MvaI	CCWGG	5 cut(s)	733, 1182, 1226, 1421, 2387
MvnI	CGCG	2 cut(s)	1779, 2009
NarI	GGCGCC	1 cut(s)	1239
NciI	CCSGG	4 cut(s)	139, 1206, 1302, 1811
NdeI	CATATG	1 cut(s)	638
NlaIII	CATG	9 cut(s)	275, 666, 910, 1567, 1701, 1979, 2110, 2686, 2815
NlaIV	GGNNCC	5 cut(s)	480, 960, 1240, 1455, 2742
NmeAIII	GCCGAG	2 cut(s)	955, 2626
NmuCI	GTSAC	2 cut(s)	1196, 2584
NsiI	ATGCAT	1 cut(s)	2079
NspI	RCATGY	1 cut(s)	2110
NspV	TTCGAA	1 cut(s)	1105
PaeI	GCATGC	1 cut(s)	2110
PaeR7I	CTCGAG	1 cut(s)	1285
PaqCI	CACCTGC	1 cut(s)	34
PceI	AGGCCT	1 cut(s)	2119
PcsI	WCGNNNNNNNCGW	1 cut(s)	1522
PctI	GAATGC	3 cut(s)	165, 1117, 2123
PdmI	GAANNNNTTC	1 cut(s)	2759
PfeI	GAWTC	6 cut(s)	516, 920, 1213, 1937, 2653, 2779
PflFI	GACNNNGTC	1 cut(s)	2217
PfoI	TCCNGGA	2 cut(s)	1204, 1809
PinAI	ACCGGT	1 cut(s)	2063
PleI	GAGTC	3 cut(s)	1912, 2468, 2824
PluTI	GGCGCC	1 cut(s)	1242
PmaCI	CACGTG	2 cut(s)	992, 1196
PmlI	CACGTG	2 cut(s)	992, 1196
PpsI	GAGTC	3 cut(s)	1912, 2468, 2824
Ppu21I	YACGTR	2 cut(s)	992, 1196
PsiI	TTATAA	1 cut(s)	2678
Psp124BI	GAGCTC	1 cut(s)	2625
Psp6I	CCWGG	5 cut(s)	731, 1180, 1224, 1419, 2385
PspCI	CACGTG	2 cut(s)	992, 1196
PspGI	CCWGG	5 cut(s)	731, 1180, 1224, 1419, 2385
PspN4I	GGNNCC	5 cut(s)	480, 960, 1240, 1455, 2742
PspPI	GGNCC	5 cut(s)	1453, 1589, 1646, 2640, 2741
PstI	CTGCAG	2 cut(s)	772, 1360
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	2 cut(s)	645, 1747
PsyI	GACNNNGTC	1 cut(s)	2217
RsaI	GTAC	4 cut(s)	790, 960, 2231, 2329
RsaNI	GTAC	4 cut(s)	789, 959, 2230, 2328
RseI	CAYNNNNRTG	1 cut(s)	2082
SacI	GAGCTC	1 cut(s)	2625
Sau96I	GGNCC	5 cut(s)	1453, 1589, 1646, 2640, 2741
SchI	GAGTC	3 cut(s)	1913, 2469, 2824
ScrFI	CCNGG	9 cut(s)	139, 733, 1182, 1206, 1226, 1302, 1421, 1811, 2387
SduI	GDGCHC	6 cut(s)	756, 997, 2185, 2398, 2625, 2862
SfaNI	GCATC	4 cut(s)	46, 1759, 1780, 2064
SfcI	CTRYAG	3 cut(s)	768, 852, 1356
SfoI	GGCGCC	1 cut(s)	1240
Sfr274I	CTCGAG	1 cut(s)	1285
SfuI	TTCGAA	1 cut(s)	1105
SinI	GGWCC	4 cut(s)	1453, 1589, 1646, 2640
SlaI	CTCGAG	1 cut(s)	1285
SmiMI	CAYNNNNRTG	1 cut(s)	2082
SmlI	CTYRAG	3 cut(s)	1285, 2113, 2441
SmoI	CTYRAG	3 cut(s)	1285, 2113, 2441
SphI	GCATGC	1 cut(s)	2110
SseBI	AGGCCT	1 cut(s)	2119
SspDI	GGCGCC	1 cut(s)	1238
SspI	AATATT	1 cut(s)	461
SspMI	CTAG	1 cut(s)	276
SstI	GAGCTC	1 cut(s)	2625
StuI	AGGCCT	1 cut(s)	2119
StyD4I	CCNGG	9 cut(s)	137, 731, 1180, 1204, 1224, 1300, 1419, 1809, 2385
StyI	CCWWGG	3 cut(s)	1175, 1671, 2539
TaaI	ACNGT	9 cut(s)	493, 535, 793, 835, 1235, 1546, 1646, 2327, 2584
TaiI	ACGT	3 cut(s)	994, 1198, 1410
TatI	WGTACW	2 cut(s)	788, 2327
TauI	GCSGC	2 cut(s)	39, 2250
TfiI	GAWTC	6 cut(s)	516, 920, 1213, 1937, 2653, 2779
TscAI	CASTG	8 cut(s)	295, 306, 777, 829, 1240, 1525, 2199, 2862
TseFI	GTSAC	2 cut(s)	1196, 2584
TseI	GCWGC	9 cut(s)	442, 473, 767, 902, 1676, 1710, 1722, 1793, 2943
Tsp45I	GTSAC	2 cut(s)	1196, 2584
TspGWI	ACGGA	5 cut(s)	12, 789, 1182, 1938, 2063
TspRI	CASTG	8 cut(s)	295, 306, 777, 829, 1240, 1525, 2199, 2862
Tth111I	GACNNNGTC	1 cut(s)	2217
VneI	GTGCAC	1 cut(s)	993
VpaK11BI	GGWCC	4 cut(s)	1453, 1589, 1646, 2640
XagI	CCTNNNNNAGG	2 cut(s)	1179, 2720
XapI	RAATTY	9 cut(s)	267, 429, 941, 973, 1094, 1581, 2199, 2360, 2612
XceI	RCATGY	1 cut(s)	2110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1149
XhoI	CTCGAG	1 cut(s)	1285
XmiI	GTMKAC	4 cut(s)	296, 855, 1907, 2212
XmnI	GAANNNNTTC	1 cut(s)	2759
XspI	CTAG	1 cut(s)	276
Zsp2I	ATGCAT	1 cut(s)	2079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.