Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8341655.1

Orthogroup ID

OG0010642

Physical Location & Seq

Genomic Coordinates Reverse (-)

222 .. 815

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8341655.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgcagctttcgaatctggcaagtgttttgtttcttggcctcttcctctccatcattctcaccagtgtgattgagttgcggtggagtggtgtcagcatccaagacttgtggcgtaatgagcagttctgggtcataggaggtgtttcagcccatctctttgctgtcttccaaggcttcctcaagatgttggctggtgtggacaccaacttcactgtcacatctaaagcagccgaagatgcagacttcggagagctctatatgatcaaatggactacacttctgattcccccaactacactcctcattgtgaacatggttggtgttgttgctggattttctgatgcactaaacaagggttatgaagcttgggggccactatttggcaaggttttctttgccttctgggtgattcttcatctctatccattcctcaaaggtctcatgggacgccaaaaccggactccaaccattgttgttttgtggtcaattctgttggcctctgtcttctctcttgtttgggtcaggataaatccatttgtgagcaaagtcgataactcagcccttactacagactgcatttccatcgactgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0006970 GO:0007049 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0010035 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0016760 GO:0022402 GO:0030243 GO:0030244 GO:0030312 GO:0033692 GO:0034637 GO:0034645 GO:0035251 GO:0042221 GO:0042546 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0050832 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0051704 GO:0051707 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:1901576 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt WD40 zf-UDP

Protein Analysis

197

Amino Acids

21.95

Weight (kDa)

6.06

Isoelectric Point (pI)

20.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18780
fragaria_vesca	FvH4_3g07420 FvH4_3g07420
malus_domestica	MD05G1296600.v1.1 MD10G1276500.v1.1
prunus_persica	Prupe.4G065700_v2.0.a1 Prupe.4G065700_v2.0.a1
pyrus_communis	pycom05g27510 pycom10g23090
rosa_chinensis	RchiOBHm_Chr5g0011441
rosa_laevigata	RLG00000031835
rosa_multiflora	Rmu_co8341655.1_g000001 Rmu_sc0009001.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065000
rosa_rugosa	Rorug04G0457000
rosa_samantha	Rh5AG088900 Rh5BG084100 Rh5CG097600 Rh5DG084100
rosa_wichuraiana	Rw5G007740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	380
AciI	CCGC	1 cut(s)	79
AcyI	GRCGYC	1 cut(s)	448
AfiI	CCNNNNNNNGG	1 cut(s)	380
AleI	CACNNNNGTG	1 cut(s)	65
AluBI	AGCT	3 cut(s)	7, 253, 365
AluI	AGCT	3 cut(s)	7, 253, 365
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	443
AoxI	GGCC	3 cut(s)	37, 371, 495
ApeKI	GCWGC	2 cut(s)	4, 227
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	2 cut(s)	52, 418
AsuII	TTCGAA	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	255
BbsI	GAAGAC	2 cut(s)	157, 496
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	16, 239
BccI	CCATC	3 cut(s)	59, 159, 590
BcgI	CGANNNNNNTGC	1 cut(s)	565
BclI	TGATCA	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	567
BisI	GCNGC	2 cut(s)	5, 228
BlsI	GCNGC	2 cut(s)	6, 229
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	372
BmsI	GCATC	3 cut(s)	105, 226, 331
BpiI	GAAGAC	2 cut(s)	157, 496
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	448
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	290
BseXI	GCAGC	2 cut(s)	16, 239
BshFI	GGCC	3 cut(s)	39, 373, 497
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	459
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	459
BsnI	GGCC	3 cut(s)	39, 373, 497
Bso31I	GGTCTC	1 cut(s)	443
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	3 cut(s)	39, 373, 497
BspCNI	CTCAG	1 cut(s)	569
BspLI	GGNNCC	1 cut(s)	372
BspT104I	TTCGAA	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	1 cut(s)	261
BssNI	GRCGYC	1 cut(s)	448
BssT1I	CCWWGG	1 cut(s)	169
Bst4CI	ACNGT	2 cut(s)	214, 590
Bst6I	CTCTTC	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	448
BstBI	TTCGAA	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	556
BstF5I	GGATG	1 cut(s)	96
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 236
BstSFI	CTRYAG	1 cut(s)	567
BstV1I	GCAGC	2 cut(s)	16, 239
BstV2I	GAAGAC	2 cut(s)	157, 496
BsuRI	GGCC	3 cut(s)	39, 373, 497
BtsCI	GGATG	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	70, 210
Cfr13I	GGNCC	1 cut(s)	371
CseI	GACGC	1 cut(s)	456
CspCI	CAANNNNNGTGG	2 cut(s)	89, 124
CviAII	CATG	2 cut(s)	313, 442
DdeI	CTNAG	1 cut(s)	556
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	443
Eco53kI	GAGCTC	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	2 cut(s)	316, 445
FaiI	YATR	6 cut(s)	134, 258, 260, 314, 360, 443
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FaqI	GGGAC	1 cut(s)	459
FatI	CATG	2 cut(s)	312, 441
FbaI	TGATCA	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	5, 228
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	2 cut(s)	5, 228
GluI	GCNGC	2 cut(s)	5, 228
HaeIII	GGCC	3 cut(s)	39, 373, 497
HapII	CCGG	1 cut(s)	457
HgaI	GACGC	1 cut(s)	456
Hin1I	GRCGYC	1 cut(s)	448
Hin1II	CATG	2 cut(s)	316, 445
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	4 cut(s)	13, 283, 409, 460
HpaII	CCGG	1 cut(s)	457
HphI	GGTGA	2 cut(s)	52, 418
Hpy166II	GTNNAC	2 cut(s)	199, 310
Hpy188I	TCNGA	3 cut(s)	248, 282, 340
Hpy188III	TCNNGA	2 cut(s)	181, 523
Hpy8I	GTNNAC	2 cut(s)	199, 310
HpyAV	CCTTC	1 cut(s)	409
HpyCH4III	ACNGT	2 cut(s)	214, 590
HpyCH4V	TGCA	4 cut(s)	4, 239, 344, 576
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 236
HpyF3I	CTNAG	1 cut(s)	556
Hsp92I	GRCGYC	1 cut(s)	448
Hsp92II	CATG	2 cut(s)	316, 445
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	1 cut(s)	261
LpnPI	CCDG	8 cut(s)	2, 76, 112, 177, 315, 388, 470, 508
Lsp1109I	GCAGC	2 cut(s)	16, 239
LweI	GCATC	3 cut(s)	105, 226, 331
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	5 cut(s)	34, 157, 245, 404, 496
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	1 cut(s)	486
MlyI	GAGTC	1 cut(s)	454
MmeI	TCCRAC	1 cut(s)	488
MnlI	CCTC	7 cut(s)	50, 56, 131, 188, 311, 440, 508
MseI	TTAA	1 cut(s)	592
MslI	CAYNNNNRTG	1 cut(s)	65
MspI	CCGG	1 cut(s)	457
MwoI	GCNNNNNNNGC	2 cut(s)	118, 236
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	2 cut(s)	316, 445
NlaIV	GGNNCC	1 cut(s)	372
NmuCI	GTSAC	1 cut(s)	214
NspV	TTCGAA	1 cut(s)	11
OliI	CACNNNNGTG	1 cut(s)	65
PfeI	GAWTC	3 cut(s)	13, 283, 409
PflMI	CCANNNNNTGG	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	6, 229
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
Psp124BI	GAGCTC	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	372
PspPI	GGNCC	1 cut(s)	371
RseI	CAYNNNNRTG	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	592
SatI	GCNGC	2 cut(s)	5, 228
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	1 cut(s)	454
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	6 cut(s)	9, 142, 255, 367, 390, 439
SfaNI	GCATC	3 cut(s)	105, 226, 331
SfcI	CTRYAG	1 cut(s)	567
SfuI	TTCGAA	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	1 cut(s)	486
SsiI	CCGC	1 cut(s)	79
SstI	GAGCTC	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	2 cut(s)	214, 590
TaqI	TCGA	3 cut(s)	11, 549, 585
TasI	AATT	1 cut(s)	486
TfiI	GAWTC	3 cut(s)	13, 283, 409
Tru1I	TTAA	1 cut(s)	592
Tru9I	TTAA	1 cut(s)	592
TscAI	CASTG	2 cut(s)	70, 217
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	2 cut(s)	4, 227
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	375, 404
TspRI	CASTG	2 cut(s)	70, 217
Van91I	CCANNNNNTGG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.