Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010642

Physical Location & Seq

Genomic Coordinates Forward (+)

61028427 .. 61037229

Gene Structure 8803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0457000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3528 bp

ATGTCACAGAAATCTAGGTCCACACCTTCCTTCCAGTCAATCAAATCATTGCCTGGTGATTTTAGGTTCTCAGGCGCACCGGCTTCTGATCGATTTGGAGATGACGATAATTTCAGAAATAGTAATATCATCTCCTCCAGTATTCCAGAAAATGGTGAACTAAAGGATAGCATTGCTGAAGGTAGTCCCGGGGGGCCTCTTGGTGACATGGACCAAGTAGTTGATGATTCACCATATACCGGCAACACTGTCTCCACTGAAGACAGGCAGTCAAGTGTTGATGAGGACCTGGATTCTGTAACTCCACCTTTACCCTCAATATCTTCATTTCGCACAGAACGTCGGTGGGGTGACACCACGTCATATGCTGGGAAGAAGAAGCTACAATCTTGGTACCAGCTTCCAAATGGGAATTGGGAACTGGGGAAAATATTGTCAACTTCAGTCACTGAAACTGTTATATCACTGCCTAACGAGAAGGTTATAAAGGTAAAAACTGAAGATTTGGTTCCAGCAAATCCTGATATCCTTGATGGTGTGGATGATCTCATGCAACTTAGTTACTTAAACGAACCATCAGTGCTGTACAATCTTCAGTATAGATACAATCGAGATATGATTTATACAAAAGCGGGACCAGTGTTGGTTGCTATCAACCCCTTTAAGAAAGTTTGTTTATATGGGAATGAATACATTGAAGCATATAAGCGTAAAGCTGTTGATAGTCCACATGTATATGCCATCACAGACACAGCCATCCGAGAAATGGTTCGAGATGAAGTAAATCAATCGATAATTATAAGTGGGGAAAGTGGAGCAGGAAAAACTGAAACTGCAAAGATAGCAATGCAATATTTGGCCGCACTTGGAGGTGGAAGTGGAATAGAACATGAAATATTGAAAACTAATCCGATACTAGAAGCCTTTGGTAATGCAAAAACATTAAGAAATGACAACTCAAGTCGCTTTGGAAAATTGATTGAAATCCACTTTAGTGAAACTGGAAAGATATCTGGTGCCAACATTCAAACTTTTTTGCTTGAAAAGTCTAGAGTCGTCCAATGCACTGAGGGAGAAAGGTCATACCATATATTTTATCAGCTGTGTGCTGGAGCTCCACCTGCTCTTAGAGAGATGCTGAACTTGAAGAGTGCAGATGAGTACAAATATCTGCAGCAAAGCAATTGTTATTCCATTACTGGAGTTGATGATGCCGAAGAATTTCGTGTGGTCAAGGAAGCTCTAGATGTTGTCCATATTAACAAGGAAGACCAAGAAAGTGTCTTTGCAATGCTTGCTGCAGTCTTGTGGCTGGGAAACATCTCATTTAGTGTGATTGATAATGAAAATCATGTGGAAGCTGTGGCAGATGAAGGTCTGTTTACTGTTGCTAAATTGGTTGGATGTAGCCCGGAGGAGCTTACGCTTGCTTTATCAACTCGCAAAATGCGAGTTGGTAATGACAATATTGTCCAAAAGCTAACACTATCACAGGCTGTCGATACGAGAGATGCTTTGGCAAAGTCGATCTATGCATGTTTGTTTGAGTGGTTGGTTGAACAAATTAACAAATCACTTGCAGTAGGAAAGCGGCGTACTGGCAGATCTATTAGCATTCTGGATATCTATGGTTTTGAATCCTTTGATAGAAATAGTTTTGAACAATTCTGCATTAATTATGCAAATGAGAGATTGCAGCAGCACTTCAATCGCCACTTGTTCAAACTAGAGCAGGAGGAATATATCCAGGATGGCATTGATTGGACAAGAGTTGAATTTGAAGACAACCAAGATTGCCTTGGCCTTTTTGAAAAGAGACCGTTGGGATTACTGTCCCTCTTAGATGAAGAGTCCACTTTCCCAAATGGTAGTGATTTGACCTTCGCCAACAAGCTTAAGCAACATCTGAGTTCTAATTCTTCTTTTAGAGGAGAACGAGACAAAGCCTTTACTGTCAGTCATTATGCTGGAGAGGTTACATATGACACAACAGGTTTTTTGGAGAAGAATAGAGACTTGCTGCATTTGGATTCCATTCAGCTTCTTTCCTCATGCTCATGCCACCTTCCTCAGATATTTGCATCTAGTATGCTCAATCGATCTGAGAAGCCTGTAGTTGGCCCCTTGCATAAATTAGGTGGAGCAGACTCCCAGAAGCTGAGTGTTGCAACAAAATTTAAGAGCCAATTGTTCCTACTGATGAAACGTCTTGAGAACACCACTCCACATTTCATACGTTGTATCAAGCCCAACAATAGTCAATCTCCAGGAATATATGAGCAAGGACTTGTCCTGCAGCAACTAAGATGTTGTGGAGTCCTTGAAGTGGTTCGAATATCGAGATCTGGCTTTCCTACCAGAATGTCTCACCAGAAGTTTGCAAGAAGATATGGTTTTCTTCTGCTGGAGAATGTTGCATCACAGGAGCCACTTAGTGTTTCAGTTGCTATTCTTCATCAGTTCAATATATTACCAGAGATGTATCAAGTGGGCTATACAAAATTGTTTTTCCGTACTGGACAGATTGGGGTGCTTGAGGATACCAGAAATCGTACACTCCATGGTATTTTACGCGTTCAAAGCTGCTTTAGAGGACACCAAGCTCGATGTTACCTTAAGGAGCTGAGAAGAGGAATCACCACGCTTCAATCCTTTGTAAGGGGAGAGAAAACGAGAAAGGAGTATGCAGTTTTACTACAGAGGCATAGAGCTGCTGTATTCATACAAAAGCTGATGAAAAGCAGGATTGCAAGGAAGAAATTCATTAACATTTGTGATGCATCAATCGTGATACAATCAGTTTATCGTGGCTGGTTTGTCAGAAGATGCTCAGGAGGTATAGGATTAATGAAACCTGGGAGCACAAAGGCGAACGAGTCAGATGAGGTGCTGGTCAAATCATCTTTTCTAGCTGAATTACAACGTCGTGTTCTTAAGGCTGAAGCTGCCTTGAGAGAGAAGGAAGAGGAGAACGACATTCTCCACCAACGCCTCCAACAGTATGAGAACCGCTGGTCTGAATATGAGCTGAAAATGAAATCCATGGAAGAAGTATGGCAGAAACAAATGAGATCCCTGCAATCCAGCCTCTCAATTGCCAAGAAGAGCCTTGCCATTGATGATTCTGAGAGAAATTCTGATGCATCGGTCAATGCAAGTGATGATCGCGACTACAGTTGGGATACAGGAAGCAACCATAAAGGCCAAGATAGCAATGGGGGAAGACCCATGAGTGCCGGTTTGAGTGTTATAAGCCGGTTGACTGAAGAATTTGACCAGAGGAGTCAAGTATTTGGTGATGACGCCAAGTTCTTGGTGGAGGTAAAATCTGGTCAAGTTGAAGCAAGTCTGAATCCAGACCGAGAGCTTAGAAGGTTGAAGCAGATGTTTGAGGCTTGGAAGAAGGATTATGGTGCAAGACTTCGGGAGACAAAGGTGGTGTTGACTAAGCTTGGAAATGAAGAGGGTACTGTTGATAGGGCAAAAAAGAAGTGGTGGGGAAGGAGGAACAGCTCGAGGATAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0006970 GO:0007049 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0010035 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0016760 GO:0022402 GO:0030243 GO:0030244 GO:0030312 GO:0033692 GO:0034637 GO:0034645 GO:0035251 GO:0042221 GO:0042546 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0050832 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0051704 GO:0051707 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:1901576 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt WD40 zf-UDP

Protein Analysis

1175

Amino Acids

132.76

Weight (kDa)

7.52

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_VIII-1_N	PF25369	128 - 172	2e-24	Myosin-1-like, N-terminal SH3 domain
Myosin_head	PF00063	180 - 838	7.7e-244	Myosin head (motor domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18780
fragaria_vesca	FvH4_3g07420 FvH4_3g07420
malus_domestica	MD05G1296600.v1.1 MD10G1276500.v1.1
prunus_persica	Prupe.4G065700_v2.0.a1 Prupe.4G065700_v2.0.a1
pyrus_communis	pycom05g27510 pycom10g23090
rosa_chinensis	RchiOBHm_Chr5g0011441
rosa_laevigata	RLG00000031835
rosa_multiflora	Rmu_co8341655.1_g000001 Rmu_sc0009001.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065000
rosa_rugosa	Rorug04G0457000
rosa_samantha	Rh5AG088900 Rh5BG084100 Rh5CG097600 Rh5DG084100
rosa_wichuraiana	Rw5G007740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	485, 800, 3251
AarI	CACCTGC	1 cut(s)	1129
AasI	GACNNNNNNGTC	1 cut(s)	1469
Acc36I	ACCTGC	1 cut(s)	1129
Acc65I	GGTACC	1 cut(s)	393
AccB1I	GGYRCC	2 cut(s)	393, 1016
AccB7I	CCANNNNNTGG	1 cut(s)	152
AccII	CGCG	2 cut(s)	2574, 3168
AciI	CCGC	4 cut(s)	632, 861, 1591, 3010
AclWI	GGATC	1 cut(s)	3066
AcoI	YGGCCR	1 cut(s)	858
AcsI	RAATTY	6 cut(s)	1220, 1775, 2174, 2759, 3133, 3269
AcuI	CTGAAG	7 cut(s)	198, 279, 426, 519, 578, 2961, 3285
AcyI	GRCGYC	1 cut(s)	3303
AdeI	CACNNNGTG	1 cut(s)	2435
AfaI	GTAC	7 cut(s)	395, 587, 1163, 1597, 2515, 2554, 3469
AfiI	CCNNNNNNNGG	6 cut(s)	152, 239, 766, 2117, 2326, 2658
AflII	CTTAAG	3 cut(s)	1895, 2615, 2933
AflIII	ACRYGT	2 cut(s)	730, 2572
AhdI	GACNNNNNGTC	2 cut(s)	268, 358
AjiI	CACGTC	1 cut(s)	360
AjnI	CCWGG	5 cut(s)	52, 288, 1746, 2266, 2854
AleI	CACNNNNGTG	1 cut(s)	993
Alw21I	GWGCWC	2 cut(s)	1117, 2864
Alw26I	GTCTC	6 cut(s)	256, 1810, 1932, 2007, 2370, 3422
AlwI	GGATC	1 cut(s)	3066
AlwNI	CAGNNNCTG	2 cut(s)	449, 2158
Ama87I	CYCGRG	2 cut(s)	188, 3514
AoxI	GGCC	5 cut(s)	194, 858, 1801, 2119, 3202
ApeKI	GCWGC	9 cut(s)	1174, 1298, 1696, 1699, 2020, 2296, 2583, 2711, 2945
ApoI	RAATTY	6 cut(s)	1220, 1775, 2174, 2759, 3133, 3269
AseI	ATTAAT	2 cut(s)	1674, 2846
Asp700I	GAANNNNTTC	4 cut(s)	768, 1221, 2328, 2759
Asp718I	GGTACC	1 cut(s)	393
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	6 cut(s)	18, 194, 211, 286, 635, 2120
AsuC2I	CCSGG	3 cut(s)	189, 190, 1412
AsuHPI	GGTGA	8 cut(s)	68, 167, 215, 222, 362, 2360, 2629, 3308
AsuII	TTCGAA	1 cut(s)	2332
AvaI	CYCGRG	2 cut(s)	188, 3514
AvaII	GGWCC	4 cut(s)	18, 211, 286, 635
BanI	GGYRCC	2 cut(s)	393, 1016
BanII	GRGCYC	1 cut(s)	1117
BbsI	GAAGAC	4 cut(s)	267, 1275, 1788, 3229
Bbv12I	GWGCWC	2 cut(s)	1117, 2864
BbvI	GCAGC	9 cut(s)	1186, 1285, 1708, 1711, 2007, 2308, 2570, 2698, 2932
BccI	CCATC	5 cut(s)	527, 583, 749, 764, 1745
BcgI	CGANNNNNNTGC	2 cut(s)	1691, 1725
BciT130I	CCWGG	5 cut(s)	54, 290, 1748, 2268, 2856
BciVI	GTATCC	2 cut(s)	2533, 3175
BcnI	CCSGG	3 cut(s)	189, 190, 1412
BcoDI	GTCTC	6 cut(s)	256, 1810, 1932, 2007, 2370, 3422
BfaI	CTAG	7 cut(s)	15, 917, 1050, 1244, 1727, 2085, 2909
BfmI	CTRYAG	6 cut(s)	1172, 1299, 2112, 2294, 2696, 3172
BfrI	CTTAAG	3 cut(s)	1895, 2615, 2933
BfuAI	ACCTGC	1 cut(s)	1129
BfuI	GTATCC	2 cut(s)	2533, 3175
BglII	AGATCT	2 cut(s)	1604, 2342
Bme1390I	CCNGG	8 cut(s)	54, 189, 190, 290, 1412, 1748, 2268, 2856
Bme18I	GGWCC	4 cut(s)	18, 211, 286, 635
BmeRI	GACNNNNNGTC	2 cut(s)	268, 358
BmeT110I	CYCGRG	2 cut(s)	188, 3514
BmgBI	CACGTC	1 cut(s)	360
BmgT120I	GGNCC	6 cut(s)	18, 194, 211, 286, 635, 2120
BmiI	GGNNCC	7 cut(s)	195, 395, 510, 636, 1018, 2122, 2427
BmrFI	CCNGG	8 cut(s)	54, 189, 190, 290, 1412, 1748, 2268, 2856
BmrI	ACTGGG	1 cut(s)	431
BmuI	ACTGGG	1 cut(s)	431
BpiI	GAAGAC	4 cut(s)	267, 1275, 1788, 3229
BpmI	CTGGAG	6 cut(s)	121, 1131, 1221, 1989, 2250, 2426
Bpu10I	CCTNAGC	1 cut(s)	2830
Bpu14I	TTCGAA	1 cut(s)	2332
BpuEI	CTTGAG	4 cut(s)	943, 2231, 2555, 2971
BpuMI	CCSGG	3 cut(s)	189, 190, 1412
Bsa29I	ATCGAT	3 cut(s)	91, 791, 2098
BsaBI	GATNNNNATC	1 cut(s)	983
BsaHI	GRCGYC	1 cut(s)	3303
BsaI	GGTCTC	1 cut(s)	1810
BsaJI	CCNNGG	6 cut(s)	188, 189, 1798, 2560, 2855, 3042
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	6 cut(s)	152, 239, 766, 2117, 2326, 2658
Bse118I	RCCGGY	4 cut(s)	79, 239, 3236, 3255
Bse1I	ACTGG	8 cut(s)	34, 138, 426, 638, 1006, 1204, 1603, 2521
Bse3DI	GCAATG	5 cut(s)	47, 171, 852, 1296, 3220
Bse8I	GATNNNNATC	1 cut(s)	983
BseBI	CCWGG	5 cut(s)	54, 290, 1748, 2268, 2856
BseCI	ATCGAT	3 cut(s)	91, 791, 2098
BseDI	CCNNGG	6 cut(s)	188, 189, 1798, 2560, 2855, 3042
BseGI	GGATG	4 cut(s)	547, 756, 1409, 1756
BseJI	GATNNNNATC	1 cut(s)	983
BseLI	CCNNNNNNNGG	6 cut(s)	152, 239, 766, 2117, 2326, 2658
BseMI	GCAATG	5 cut(s)	47, 171, 852, 1296, 3220
BseMII	CTCAG	9 cut(s)	84, 1059, 1898, 2084, 2094, 2150, 2615, 2844, 3117
BseNI	ACTGG	8 cut(s)	34, 138, 426, 638, 1006, 1204, 1603, 2521
BseRI	GAGGAG	5 cut(s)	124, 1430, 1944, 2981, 3295
BseXI	GCAGC	9 cut(s)	1186, 1285, 1708, 1711, 2007, 2308, 2570, 2698, 2932
BseYI	CCCAGC	2 cut(s)	368, 1312
BsgI	GTGCAG	1 cut(s)	1173
Bsh1236I	CGCG	2 cut(s)	2574, 3168
BshFI	GGCC	5 cut(s)	196, 860, 1803, 2121, 3204
BshNI	GGYRCC	2 cut(s)	393, 1016
BshVI	ATCGAT	3 cut(s)	91, 791, 2098
BsiHKAI	GWGCWC	2 cut(s)	1117, 2864
BsiHKCI	CYCGRG	2 cut(s)	188, 3514
BsiSI	CCGG	6 cut(s)	80, 189, 240, 1412, 3237, 3256
BslFI	GGGAC	3 cut(s)	171, 648, 1819
BslI	CCNNNNNNNGG	6 cut(s)	152, 239, 766, 2117, 2326, 2658
BsmAI	GTCTC	6 cut(s)	256, 1810, 1932, 2007, 2370, 3422
BsmFI	GGGAC	3 cut(s)	171, 648, 1819
BsmI	GAATGC	1 cut(s)	1614
BsnI	GGCC	5 cut(s)	196, 860, 1803, 2121, 3204
Bso31I	GGTCTC	1 cut(s)	1810
BsoBI	CYCGRG	2 cut(s)	188, 3514
Bsp119I	TTCGAA	1 cut(s)	2332
Bsp1286I	GDGCHC	2 cut(s)	1117, 2864
Bsp1407I	TGTACA	1 cut(s)	585
Bsp143I	GATC	8 cut(s)	88, 544, 1527, 1604, 2099, 2342, 3071, 3163
Bsp19I	CCATGG	2 cut(s)	2560, 3042
Bsp68I	TCGCGA	1 cut(s)	3168
BspACI	CCGC	4 cut(s)	632, 861, 1591, 3010
BspANI	GGCC	5 cut(s)	196, 860, 1803, 2121, 3204
BspCNI	CTCAG	9 cut(s)	83, 1060, 1899, 2083, 2095, 2151, 2616, 2843, 3118
BspDI	ATCGAT	3 cut(s)	91, 791, 2098
BspFNI	CGCG	2 cut(s)	2574, 3168
BspLI	GGNNCC	7 cut(s)	195, 395, 510, 636, 1018, 2122, 2427
BspMAI	CTGCAG	3 cut(s)	1176, 1303, 2298
BspMI	ACCTGC	1 cut(s)	1129
BspPI	GGATC	1 cut(s)	3066
BspQI	GCTCTTC	1 cut(s)	3098
BspT104I	TTCGAA	1 cut(s)	2332
BspT107I	GGYRCC	2 cut(s)	393, 1016
BspTI	CTTAAG	3 cut(s)	1895, 2615, 2933
BspTNI	GGTCTC	1 cut(s)	1810
BsrDI	GCAATG	5 cut(s)	47, 171, 852, 1296, 3220
BsrFI	RCCGGY	4 cut(s)	79, 239, 3236, 3255
BsrGI	TGTACA	1 cut(s)	585
BsrI	ACTGG	8 cut(s)	34, 138, 426, 638, 1006, 1204, 1603, 2521
BssAI	RCCGGY	4 cut(s)	79, 239, 3236, 3255
BssECI	CCNNGG	6 cut(s)	188, 189, 1798, 2560, 2855, 3042
BssMI	GATC	8 cut(s)	88, 544, 1527, 1604, 2099, 2342, 3071, 3163
BssNI	GRCGYC	1 cut(s)	3303
BssT1I	CCWWGG	3 cut(s)	1798, 2560, 3042
Bst2UI	CCWGG	5 cut(s)	54, 290, 1748, 2268, 2856
Bst4CI	ACNGT	9 cut(s)	250, 457, 1387, 1821, 1833, 1954, 3000, 3176, 3472
Bst6I	CTCTTC	6 cut(s)	1142, 1842, 2623, 2958, 3098, 3456
BstACI	GRCGYC	1 cut(s)	3303
BstAFI	CTTAAG	3 cut(s)	1895, 2615, 2933
BstAPI	GCANNNNNTGC	1 cut(s)	1295
BstAUI	TGTACA	1 cut(s)	585
BstBI	TTCGAA	1 cut(s)	2332
BstC8I	GCNNGC	2 cut(s)	1296, 1428
BstDSI	CCRYGG	2 cut(s)	2560, 3042
BstENI	CCTNNNNNAGG	1 cut(s)	2656
BstF5I	GGATG	4 cut(s)	547, 756, 1409, 1756
BstFNI	CGCG	2 cut(s)	2574, 3168
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	8 cut(s)	91, 547, 1530, 1607, 2102, 2345, 3074, 3166
BstMAI	GTCTC	6 cut(s)	256, 1810, 1932, 2007, 2370, 3422
BstMBI	GATC	8 cut(s)	88, 544, 1527, 1604, 2099, 2342, 3071, 3163
BstMWI	GCNNNNNNNGC	6 cut(s)	842, 1121, 1295, 2580, 2945, 3210
BstNI	CCWGG	5 cut(s)	54, 290, 1748, 2268, 2856
BstNSI	RCATGY	2 cut(s)	734, 1539
BstSCI	CCNGG	8 cut(s)	52, 187, 188, 288, 1410, 1746, 2266, 2854
BstSFI	CTRYAG	6 cut(s)	1172, 1299, 2112, 2294, 2696, 3172
BstUI	CGCG	2 cut(s)	2574, 3168
BstV1I	GCAGC	9 cut(s)	1186, 1285, 1708, 1711, 2007, 2308, 2570, 2698, 2932
BstV2I	GAAGAC	4 cut(s)	267, 1275, 1788, 3229
BstX2I	RGATCY	3 cut(s)	1604, 2342, 3071
BstXI	CCANNNNNNTGG	1 cut(s)	3313
BstYI	RGATCY	3 cut(s)	1604, 2342, 3071
Bsu15I	ATCGAT	3 cut(s)	91, 791, 2098
BsuI	GTATCC	2 cut(s)	2533, 3175
BsuRI	GGCC	5 cut(s)	196, 860, 1803, 2121, 3204
BsuTUI	ATCGAT	3 cut(s)	91, 791, 2098
BtgI	CCRYGG	2 cut(s)	2560, 3042
BtrI	CACGTC	1 cut(s)	360
BtsCI	GGATG	4 cut(s)	547, 756, 1409, 1756
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	7 cut(s)	246, 255, 447, 464, 585, 645, 1065
BtuMI	TCGCGA	1 cut(s)	3168
BveI	ACCTGC	1 cut(s)	1129
Cac8I	GCNNGC	2 cut(s)	1296, 1428
CaiI	CAGNNNCTG	2 cut(s)	449, 2158
CfoI	GCGC	1 cut(s)	77
Cfr10I	RCCGGY	4 cut(s)	79, 239, 3236, 3255
Cfr13I	GGNCC	6 cut(s)	18, 194, 211, 286, 635, 2120
Cfr9I	CCCGGG	1 cut(s)	188
ClaI	ATCGAT	3 cut(s)	91, 791, 2098
CseI	GACGC	1 cut(s)	3311
Csp6I	GTAC	7 cut(s)	394, 586, 1162, 1596, 2514, 2553, 3468
CviQI	GTAC	7 cut(s)	394, 586, 1162, 1596, 2514, 2553, 3468
DpnI	GATC	8 cut(s)	90, 546, 1529, 1606, 2101, 2344, 3073, 3165
DpnII	GATC	8 cut(s)	88, 544, 1527, 1604, 2099, 2342, 3071, 3163
DraIII	CACNNNGTG	1 cut(s)	2435
DrdI	GACNNNNNNGTC	1 cut(s)	1469
DriI	GACNNNNNGTC	2 cut(s)	268, 358
DseDI	GACNNNNNNGTC	1 cut(s)	1469
EaeI	YGGCCR	1 cut(s)	858
Eam1104I	CTCTTC	6 cut(s)	1142, 1842, 2623, 2958, 3098, 3456
Eam1105I	GACNNNNNGTC	2 cut(s)	268, 358
EarI	CTCTTC	6 cut(s)	1142, 1842, 2623, 2958, 3098, 3456
Ecl136II	GAGCTC	1 cut(s)	1115
Eco130I	CCWWGG	3 cut(s)	1798, 2560, 3042
Eco24I	GRGCYC	1 cut(s)	1117
Eco31I	GGTCTC	1 cut(s)	1810
Eco32I	GATATC	3 cut(s)	526, 1011, 1624
Eco47I	GGWCC	4 cut(s)	18, 211, 286, 635
Eco53kI	GAGCTC	1 cut(s)	1115
Eco57I	CTGAAG	7 cut(s)	198, 279, 426, 519, 578, 2961, 3285
Eco88I	CYCGRG	2 cut(s)	188, 3514
EcoICRI	GAGCTC	1 cut(s)	1115
EcoNI	CCTNNNNNAGG	1 cut(s)	2656
EcoO109I	RGGNCCY	2 cut(s)	194, 286
EcoRII	CCWGG	5 cut(s)	52, 288, 1746, 2266, 2854
EcoRV	GATATC	3 cut(s)	526, 1011, 1624
EcoT14I	CCWWGG	3 cut(s)	1798, 2560, 3042
EcoT22I	ATGCAT	3 cut(s)	1537, 2782, 3145
EcoT38I	GRGCYC	1 cut(s)	1117
ErhI	CCWWGG	3 cut(s)	1798, 2560, 3042
FalI	AAGNNNNNCTT	2 cut(s)	1782, 1814
FaqI	GGGAC	3 cut(s)	171, 648, 1819
FauI	CCCGC	1 cut(s)	625
FauNDI	CATATG	2 cut(s)	364, 1981
FokI	GGATG	4 cut(s)	554, 743, 1416, 1763
FriOI	GRGCYC	1 cut(s)	1117
FspBI	CTAG	7 cut(s)	15, 917, 1050, 1244, 1727, 2085, 2909
GlaI	GCGC	1 cut(s)	76
GsaI	CCCAGC	2 cut(s)	372, 1316
GsuI	CTGGAG	6 cut(s)	121, 1131, 1221, 1989, 2250, 2426
HaeIII	GGCC	5 cut(s)	196, 860, 1803, 2121, 3204
HapII	CCGG	6 cut(s)	80, 189, 240, 1412, 3237, 3256
HgaI	GACGC	1 cut(s)	3311
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	3303
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	3 cut(s)	438, 3261, 3444
HindII	GTYRAC	3 cut(s)	438, 3261, 3444
HindIII	AAGCTT	2 cut(s)	1892, 3449
HpaII	CCGG	6 cut(s)	80, 189, 240, 1412, 3237, 3256
HphI	GGTGA	8 cut(s)	68, 167, 215, 222, 362, 2360, 2629, 3308
Hpy166II	GTNNAC	9 cut(s)	21, 158, 438, 728, 1383, 1854, 2555, 3261, 3444
Hpy8I	GTNNAC	9 cut(s)	21, 158, 438, 728, 1383, 1854, 2555, 3261, 3444
Hpy99I	CGWCG	2 cut(s)	345, 2928
HpyCH4III	ACNGT	9 cut(s)	250, 457, 1387, 1821, 1833, 1954, 3000, 3176, 3472
HpyCH4IV	ACGT	5 cut(s)	340, 359, 2206, 2236, 2923
HpyF10VI	GCNNNNNNNGC	6 cut(s)	842, 1121, 1295, 2580, 2945, 3210
HpySE526I	ACGT	5 cut(s)	340, 359, 2206, 2236, 2923
Hsp92I	GRCGYC	1 cut(s)	3303
HspAI	GCGC	1 cut(s)	75
KpnI	GGTACC	1 cut(s)	397
Kzo9I	GATC	8 cut(s)	88, 544, 1527, 1604, 2099, 2342, 3071, 3163
LguI	GCTCTTC	1 cut(s)	3098
LmnI	GCTCC	8 cut(s)	815, 1112, 1120, 1417, 2141, 2425, 2620, 2859
Lsp1109I	GCAGC	9 cut(s)	1186, 1285, 1708, 1711, 2007, 2308, 2570, 2698, 2932
MaeI	CTAG	7 cut(s)	15, 917, 1050, 1244, 1727, 2085, 2909
MaeII	ACGT	5 cut(s)	340, 359, 2206, 2236, 2923
MaeIII	GTNAC	8 cut(s)	3, 203, 298, 350, 445, 560, 1975, 2609
MalI	GATC	8 cut(s)	90, 546, 1529, 1606, 2101, 2344, 3073, 3165
MboI	GATC	8 cut(s)	88, 544, 1527, 1604, 2099, 2342, 3071, 3163
MfeI	CAATTG	3 cut(s)	1183, 2186, 3093
MflI	RGATCY	3 cut(s)	1604, 2342, 3071
MhlI	GDGCHC	2 cut(s)	1117, 2864
MluI	ACGCGT	1 cut(s)	2572
MlyI	GAGTC	6 cut(s)	1062, 1859, 2141, 2325, 2885, 3292
MmeI	TCCRAC	2 cut(s)	1381, 3019
Mph1103I	ATGCAT	3 cut(s)	1537, 2782, 3145
MroXI	GAANNNNTTC	4 cut(s)	768, 1221, 2328, 2759
MslI	CAYNNNNRTG	3 cut(s)	735, 993, 2056
MspA1I	CMGCKG	2 cut(s)	1102, 3012
MspCI	CTTAAG	3 cut(s)	1895, 2615, 2933
MspI	CCGG	6 cut(s)	80, 189, 240, 1412, 3237, 3256
MspR9I	CCNGG	8 cut(s)	54, 189, 190, 290, 1412, 1748, 2268, 2856
MunI	CAATTG	3 cut(s)	1183, 2186, 3093
Mva1269I	GAATGC	1 cut(s)	1614
MvaI	CCWGG	5 cut(s)	54, 290, 1748, 2268, 2856
MvnI	CGCG	2 cut(s)	2574, 3168
MwoI	GCNNNNNNNGC	6 cut(s)	842, 1121, 1295, 2580, 2945, 3210
NciI	CCSGG	3 cut(s)	189, 190, 1412
NcoI	CCATGG	2 cut(s)	2560, 3042
NdeI	CATATG	2 cut(s)	364, 1981
NdeII	GATC	8 cut(s)	88, 544, 1527, 1604, 2099, 2342, 3071, 3163
NlaIV	GGNNCC	7 cut(s)	195, 395, 510, 636, 1018, 2122, 2427
NmuCI	GTSAC	4 cut(s)	3, 203, 350, 445
NruI	TCGCGA	1 cut(s)	3168
NsiI	ATGCAT	3 cut(s)	1537, 2782, 3145
NspI	RCATGY	2 cut(s)	734, 1539
NspV	TTCGAA	1 cut(s)	2332
OliI	CACNNNNGTG	1 cut(s)	993
PaeR7I	CTCGAG	1 cut(s)	3514
PaqCI	CACCTGC	1 cut(s)	1129
PciI	ACATGT	1 cut(s)	730
PciSI	GCTCTTC	1 cut(s)	3098
PcsI	WCGNNNNNNNCGW	2 cut(s)	337, 1447
PctI	GAATGC	1 cut(s)	1614
PdmI	GAANNNNTTC	4 cut(s)	768, 1221, 2328, 2759
PfeI	GAWTC	7 cut(s)	227, 293, 1637, 2030, 2634, 3122, 3352
PflMI	CCANNNNNTGG	1 cut(s)	152
PfoI	TCCNGGA	2 cut(s)	1746, 2266
PleI	GAGTC	6 cut(s)	1061, 1858, 2141, 2324, 2884, 3291
PpsI	GAGTC	6 cut(s)	1061, 1858, 2141, 2324, 2884, 3291
PpuMI	RGGWCCY	1 cut(s)	286
PscI	ACATGT	1 cut(s)	730
PshBI	ATTAAT	2 cut(s)	1674, 2846
PsiI	TTATAA	3 cut(s)	485, 800, 3251
Psp124BI	GAGCTC	1 cut(s)	1117
Psp5II	RGGWCCY	1 cut(s)	286
Psp6I	CCWGG	5 cut(s)	52, 288, 1746, 2266, 2854
PspFI	CCCAGC	2 cut(s)	368, 1312
PspGI	CCWGG	5 cut(s)	52, 288, 1746, 2266, 2854
PspN4I	GGNNCC	7 cut(s)	195, 395, 510, 636, 1018, 2122, 2427
PspPI	GGNCC	6 cut(s)	18, 194, 211, 286, 635, 2120
PspPPI	RGGWCCY	1 cut(s)	286
PspXI	VCTCGAGB	1 cut(s)	3514
PstI	CTGCAG	3 cut(s)	1176, 1303, 2298
PstNI	CAGNNNCTG	2 cut(s)	449, 2158
PsuI	RGATCY	3 cut(s)	1604, 2342, 3071
PvuII	CAGCTG	1 cut(s)	1102
RruI	TCGCGA	1 cut(s)	3168
RsaI	GTAC	7 cut(s)	395, 587, 1163, 1597, 2515, 2554, 3469
RsaNI	GTAC	7 cut(s)	394, 586, 1162, 1596, 2514, 2553, 3468
RseI	CAYNNNNRTG	3 cut(s)	735, 993, 2056
SacI	GAGCTC	1 cut(s)	1117
SapI	GCTCTTC	1 cut(s)	3098
Sau3AI	GATC	8 cut(s)	88, 544, 1527, 1604, 2099, 2342, 3071, 3163
Sau96I	GGNCC	6 cut(s)	18, 194, 211, 286, 635, 2120
SchI	GAGTC	6 cut(s)	1062, 1859, 2141, 2325, 2885, 3292
ScrFI	CCNGG	8 cut(s)	54, 189, 190, 290, 1412, 1748, 2268, 2856
SduI	GDGCHC	2 cut(s)	1117, 2864
SfcI	CTRYAG	6 cut(s)	1172, 1299, 2112, 2294, 2696, 3172
Sfr274I	CTCGAG	1 cut(s)	3514
SfuI	TTCGAA	1 cut(s)	2332
SinI	GGWCC	4 cut(s)	18, 211, 286, 635
SlaI	CTCGAG	1 cut(s)	3514
SmaI	CCCGGG	1 cut(s)	190
SmiMI	CAYNNNNRTG	3 cut(s)	735, 993, 2056
SmlI	CTYRAG	8 cut(s)	958, 1895, 2210, 2534, 2615, 2933, 2950, 3514
SmoI	CTYRAG	8 cut(s)	958, 1895, 2210, 2534, 2615, 2933, 2950, 3514
SsiI	CCGC	4 cut(s)	632, 861, 1591, 3010
SspI	AATATT	4 cut(s)	432, 854, 897, 1468
SspMI	CTAG	7 cut(s)	15, 917, 1050, 1244, 1727, 2085, 2909
SstI	GAGCTC	1 cut(s)	1117
StyD4I	CCNGG	8 cut(s)	52, 187, 188, 288, 1410, 1746, 2266, 2854
StyI	CCWWGG	3 cut(s)	1798, 2560, 3042
TaaI	ACNGT	9 cut(s)	250, 457, 1387, 1821, 1833, 1954, 3000, 3176, 3472
TaiI	ACGT	5 cut(s)	343, 362, 2209, 2239, 2926
TaqII	GACCGA	2 cut(s)	3136, 3375
TatI	WGTACW	2 cut(s)	585, 1161
TauI	GCSGC	2 cut(s)	863, 1594
TfiI	GAWTC	7 cut(s)	227, 293, 1637, 2030, 2634, 3122, 3352
TscAI	CASTG	7 cut(s)	253, 262, 454, 471, 585, 645, 1072
TseFI	GTSAC	4 cut(s)	3, 203, 350, 445
TseI	GCWGC	9 cut(s)	1174, 1298, 1696, 1699, 2020, 2296, 2583, 2711, 2945
Tsp45I	GTSAC	4 cut(s)	3, 203, 350, 445
TspGWI	ACGGA	1 cut(s)	2501
TspMI	CCCGGG	1 cut(s)	188
TspRI	CASTG	7 cut(s)	253, 262, 454, 471, 585, 645, 1072
Van91I	CCANNNNNTGG	1 cut(s)	152
Vha464I	CTTAAG	3 cut(s)	1895, 2615, 2933
VpaK11BI	GGWCC	4 cut(s)	18, 211, 286, 635
VspI	ATTAAT	2 cut(s)	1674, 2846
XagI	CCTNNNNNAGG	1 cut(s)	2656
XapI	RAATTY	6 cut(s)	1220, 1775, 2174, 2759, 3133, 3269
XbaI	TCTAGA	2 cut(s)	1049, 1243
XceI	RCATGY	2 cut(s)	734, 1539
XcmI	CCANNNNNNNNNTGG	6 cut(s)	404, 411, 763, 1796, 3212, 3313
XhoI	CTCGAG	1 cut(s)	3514
XmaI	CCCGGG	1 cut(s)	188
XmnI	GAANNNNTTC	4 cut(s)	768, 1221, 2328, 2759
XspI	CTAG	7 cut(s)	15, 917, 1050, 1244, 1727, 2085, 2909
Zsp2I	ATGCAT	3 cut(s)	1537, 2782, 3145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.