Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010642

Physical Location & Seq

Genomic Coordinates Reverse (-)

7737012 .. 7742770

Gene Structure 5759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG097600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2715 bp

ATGGCATCTCACCTGGATAATGCTACGGATGTTGGAATTCATGCTAGACATGTCAGCACTGTGTCTACAGTGGATAGTGAATATAATGATGAATCTGGGAATCCAATATGGAAGAATCGAGTAGAGAGTTGGAAGGATAAAAAGAGCAAGAAGAAAAAGGATGCGGCTAAGGCAGAAAAGGTGGCTGAAATTCCACCTGAGCAGCAAATGGCAGAGAATCTTGCCCCAGAAGCTGCGCAACCACTTTCAACTGTCGTTCCACTTCCATCTAGTAAAATCACACCATACAGAATTATAATAATTATGCGACTGATCATTCTTGGTCTCTTCTTCCATTATCGAGTCACGAATCCTGTTGATAGTGCTTATGGTCTATGGCTCACTTCTATCATATGTGAGATCTGGTTTGCTTTTTCTTGGGTGTTGGATCAGTTTCCTAAGTGGTCTCCAGTTAGTAGGATTACATATACTGACACTTTATCGGCCAGATTTGAAAGAGAGGGTGAGCCTTCTCAGCTAGCTCCTGTGGATTTCTTCGTGAGTACAGTCGATCCATTGAAAGAACCACCCTTGATCACTGCCAATACTGTGCTTTCCATTCTTGCTATTGACTATCCTGTGGAGAAAGTTTCCTGCTATGTGTCTGATGACGGTGCTGCCATGCTTAGTTTCGAATCTCTTGTAGAAACATCTGAATTTGCAAGAAAGTGGGTTCCATTCTGCAAAAAATTCGCAATTGAACCACGTGCACCTGAGTTCTACTTCTCACAGAAGATTGACTACTTGAAGGATAAAGTGCAACCATCTTTTGTGAAGGAGCGCAGATCAATGAAAAGAGACTATGAGGAATTCAAAGTGAGAATGAATGCTTTGGTAGCAAAGGCTCAAAAGACACCAGAAGATGGCTGGACTATGCAAGATGGAACACCTTGGCCAGGAAATAACTCACGTGACCATCCTGGCATGATCCAGGTTTTTCTTGGACATAGTGGCGCCCTTGACAATGATGGAAATGAGCTTCCTCGATTGGTTTATGTCTCCAGAGAGAAGAGACCTGGGTACCAACACCACAAGAAAGCTGGTGCTGAAAATGCTCTGGTAAGGGTGTCTGCAGTTCTCACAAATGCCCCATTCATCCTCAATCTTGACTGTGATCACTACGTTAACAACAGCAAGGCAATTCGTGAGGCAATGTGCTTCTTGATGGATCCACAAGTTGGTAGAGATCTATGTTATGTGCAGTTTCCTCAGAGATTTGATGGCATTGATCGAAGTGACAGATATGCCAATCGCAATACAGTTTTCTTTGATGTTAACATGAAAGGACTGGATGGCATTCAAGGACCAGTATATGTGGGGACAGGTTGTTGTTTCAATAGGCAGGCACTTTATGGCTATAGTCCTCCTTCTATGCCAAGCTTATCCAAGGCATCGTCCTCGTCCTGTTCTTGGTGTGGCTGCTTCTCTTGTTGCTGCCCCTCCAAGAAACCAACTAAAGATCTGTCAGAGGCTTTCCGAGATGCAAAACGAGAGGAGCTTGATGCTGCCATTTTTAACCTCAGGGAGATTGAAAACTACGATGAGTATGAGAGGTCAATGCTGATGTCCCAGACGAGCTTTGAGAAAACTTTTGGCTTATCAACTGTATTTATTGAGTCTACACTAATGGAGTATGGAGGAGTCGCTGAATCTTCCAACCCATCACTATTAATCAAGGAGGCAATTCATGTCATTAGCTGTGGTTATGAAGAGAAGACCGCATGGGGAAAAGAGATTGGTTGGATTTATGGATCAGTCACTGAGGATATCTTAACCGGTTTCAAGATGCACTGCCGTGGATGGAGATCAGTTTACTGCATGCCCTTGAGGCCTGCATTCAAAGGTTCAGCTCCCATTAATCTTTCTGATCGTCTGCACCAAGTCCTCAGGTGGGCACTTGGATCTGTGGAAATCTTCCTCAGTAGACATTGTCCTCTCTGGTACGGGTTTGCAGGAGGCCGCCTCAAGTGGCTTCAGCGCTTGGCATACATTAACACCATTGTTTACCCCTTCACATCCCTCCCTCTCATCGCTTACTGCTCGCTGCCTGCAATATGCCTTCTCACAGGAAAATTCATCATCCCAACACTTTCGAATCTGGCAAGTGTTTTGTTTCTTGGCCTCTTCCTCTCCATCATTCTCACTAGTGTGATTGAGTTGCGGTGGAGTGGTGTCAGCATCCAAGACTTGTGGCGTAATGAGCAGTTCTGGGTCATAGGAGGTGTTTCAGCCCATCTCTTTGCTGTTTTCCAAGGTTTCCTCAAGATGTTGGCTGGTGTGGACACCAACTTCACTGTCACATCTAAAGCGGCCGAAGATGCAGACTTTGGAGAGCTCTATATGATCAAATGGACTACACTTCTGATTCCCCCAACTACACTCCTCATTGTGAACATGGTTGGTGTTGTTGCTGGATTTTCTGATGCACTAAACAAGGGTTATGAAGCTTGGGGGCCACTATTTGGCAAGGTTTTCTTTGCCTTCTGGGTGATCCTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGACGCCAAAACCGGACTCCAACCATTGTTGTTTTGTGGTCAATTCTGTTGGCCTCTGTCTTCTCTCTTGTTTGGGTCAGGATAAATCCATTTGTGAGCAAAGTCGATAACTCAGCCCTTACTACGGACTGCATTTCCATCGACTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0006970 GO:0007049 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0010035 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0016760 GO:0022402 GO:0030243 GO:0030244 GO:0030312 GO:0033692 GO:0034637 GO:0034645 GO:0035251 GO:0042221 GO:0042546 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0050832 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0051704 GO:0051707 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:1901576 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt WD40 zf-UDP

Protein Analysis

904

Amino Acids

101.83

Weight (kDa)

6.93

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	176 - 895	0.0	Cellulose synthase
Glyco_trans_2_3	PF13632	591 - 694	4.7e-06	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18780
fragaria_vesca	FvH4_3g07420 FvH4_3g07420
malus_domestica	MD05G1296600.v1.1 MD10G1276500.v1.1
prunus_persica	Prupe.4G065700_v2.0.a1 Prupe.4G065700_v2.0.a1
pyrus_communis	pycom05g27510 pycom10g23090
rosa_chinensis	RchiOBHm_Chr5g0011441
rosa_laevigata	RLG00000031835
rosa_multiflora	Rmu_co8341655.1_g000001 Rmu_sc0009001.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065000
rosa_rugosa	Rorug04G0457000
rosa_samantha	Rh5AG088900 Rh5BG084100 Rh5CG097600 Rh5DG084100
rosa_wichuraiana	Rw5G007740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	296
Acc16I	TGCGCA	1 cut(s)	237
Acc65I	GGTACC	1 cut(s)	1059
AccB1I	GGYRCC	2 cut(s)	992, 1059
AccB7I	CCANNNNNTGG	3 cut(s)	902, 1217, 2501
AccI	GTMKAC	3 cut(s)	65, 1658, 1963
AciI	CCGC	5 cut(s)	164, 1758, 1999, 2200, 2348
AclWI	GGATC	8 cut(s)	435, 545, 961, 1202, 1215, 1798, 1948, 2524
AcoI	YGGCCR	3 cut(s)	483, 932, 2349
AcsI	RAATTY	6 cut(s)	36, 189, 695, 728, 848, 2111
AcuI	CTGAAG	1 cut(s)	1997
AcvI	CACGTG	2 cut(s)	746, 950
AcyI	GRCGYC	2 cut(s)	993, 2569
AfaI	GTAC	3 cut(s)	544, 1061, 1982
AfeI	AGCGCT	1 cut(s)	2018
AfiI	CCNNNNNNNGG	7 cut(s)	902, 935, 1217, 1449, 1930, 2501, 2689
AflIII	ACRYGT	1 cut(s)	49
AgeI	ACCGGT	1 cut(s)	1814
AhlI	ACTAGT	1 cut(s)	2183
AjnI	CCWGG	5 cut(s)	12, 934, 958, 969, 1054
AleI	CACNNNNGTG	2 cut(s)	1833, 2186
Alw21I	GWGCWC	2 cut(s)	751, 2376
Alw26I	GTCTC	6 cut(s)	329, 450, 831, 1042, 1045, 2564
Alw44I	GTGCAC	1 cut(s)	747
AlwI	GGATC	8 cut(s)	435, 545, 961, 1202, 1215, 1798, 1948, 2524
AlwNI	CAGNNNCTG	2 cut(s)	233, 1799
Aor51HI	AGCGCT	1 cut(s)	2018
AoxI	GGCC	8 cut(s)	483, 932, 1868, 1996, 2158, 2349, 2492, 2616
ApaLI	GTGCAC	1 cut(s)	747
ApeKI	GCWGC	7 cut(s)	202, 233, 656, 1458, 1473, 1544, 2083
ApoI	RAATTY	6 cut(s)	36, 189, 695, 728, 848, 2111
AseI	ATTAAT	2 cut(s)	1709, 1896
AsiGI	ACCGGT	1 cut(s)	1814
Asp718I	GGTACC	1 cut(s)	1059
AspLEI	GCGC	4 cut(s)	238, 822, 995, 2019
AspS9I	GGNCC	2 cut(s)	1343, 2492
AsuHPI	GGTGA	2 cut(s)	515, 2539
AsuII	TTCGAA	2 cut(s)	672, 2132
AsuNHI	GCTAGC	1 cut(s)	517
AvaII	GGWCC	1 cut(s)	1343
AxyI	CCTNAGG	2 cut(s)	1559, 1925
BaeGI	GKGCMC	2 cut(s)	751, 1936
BaeI	ACNNNNGTAYC	2 cut(s)	1043, 1076
BalI	TGGCCA	1 cut(s)	934
BamHI	GGATCC	1 cut(s)	1207
BanI	GGYRCC	2 cut(s)	992, 1059
BanII	GRGCYC	1 cut(s)	2376
BarI	GAAGNNNNNNTAC	2 cut(s)	764, 796
BbrPI	CACGTG	2 cut(s)	746, 950
BbsI	GAAGAC	2 cut(s)	1760, 2617
Bbv12I	GWGCWC	2 cut(s)	751, 2376
BbvI	GCAGC	7 cut(s)	214, 220, 643, 1445, 1460, 1531, 2070
BceAI	ACGGC	1 cut(s)	1818
BcgI	CGANNNNNNTGC	5 cut(s)	712, 746, 1419, 1453, 2686
BciT130I	CCWGG	5 cut(s)	14, 936, 960, 971, 1056
BclI	TGATCA	4 cut(s)	312, 573, 1153, 2382
BcoDI	GTCTC	6 cut(s)	329, 450, 831, 1042, 1045, 2564
BcuI	ACTAGT	1 cut(s)	2183
BfaI	CTAG	4 cut(s)	45, 270, 518, 2184
BfmI	CTRYAG	3 cut(s)	66, 1110, 1396
BfoI	RGCGCY	2 cut(s)	996, 2020
BglI	GCCNNNNNGGC	1 cut(s)	1867
BglII	AGATCT	3 cut(s)	399, 1225, 1498
Bme1390I	CCNGG	5 cut(s)	14, 936, 960, 971, 1056
Bme18I	GGWCC	1 cut(s)	1343
BmgT120I	GGNCC	2 cut(s)	1343, 2492
BmiI	GGNNCC	5 cut(s)	714, 994, 1061, 1209, 2493
BmrFI	CCNGG	5 cut(s)	14, 936, 960, 971, 1056
BmsI	GCATC	9 cut(s)	14, 151, 1439, 1510, 1531, 1815, 2226, 2347, 2452
BmtI	GCTAGC	1 cut(s)	521
BpiI	GAAGAC	2 cut(s)	1760, 2617
BplI	GAGNNNNNCTC	2 cut(s)	1986, 2018
BpmI	CTGGAG	2 cut(s)	432, 1024
Bpu10I	CCTNAGC	2 cut(s)	168, 198
Bpu14I	TTCGAA	2 cut(s)	672, 2132
BpuEI	CTTGAG	3 cut(s)	1885, 1988, 2285
BsaAI	YACGTR	2 cut(s)	746, 950
BsaBI	GATNNNNATC	1 cut(s)	1843
BsaHI	GRCGYC	2 cut(s)	993, 2569
BsaI	GGTCTC	4 cut(s)	329, 450, 1045, 2564
BsaJI	CCNNGG	5 cut(s)	929, 1055, 1425, 1834, 2290
BsaWI	WCCGGW	2 cut(s)	1814, 2577
Bsc4I	CCNNNNNNNGG	7 cut(s)	902, 935, 1217, 1449, 1930, 2501, 2689
Bse118I	RCCGGY	1 cut(s)	1814
Bse1I	ACTGG	3 cut(s)	449, 1332, 1346
Bse21I	CCTNAGG	2 cut(s)	1559, 1925
Bse3DI	GCAATG	1 cut(s)	1197
Bse8I	GATNNNNATC	1 cut(s)	1843
BseBI	CCWGG	5 cut(s)	14, 936, 960, 971, 1056
BseDI	CCNNGG	5 cut(s)	929, 1055, 1425, 1834, 2290
BseGI	GGATG	9 cut(s)	34, 166, 955, 1134, 1336, 1844, 2054, 2118, 2217
BseJI	GATNNNNATC	1 cut(s)	1843
BseLI	CCNNNNNNNGG	7 cut(s)	902, 935, 1217, 1449, 1930, 2501, 2689
BseMI	GCAATG	1 cut(s)	1197
BseMII	CTCAG	9 cut(s)	189, 527, 744, 1262, 1573, 1791, 1939, 1972, 2691
BseNI	ACTGG	3 cut(s)	449, 1332, 1346
BseRI	GAGGAG	3 cut(s)	1547, 1692, 2411
BseSI	GKGCMC	2 cut(s)	751, 1936
BseX3I	CGGCCG	1 cut(s)	2349
BseXI	GCAGC	7 cut(s)	214, 220, 643, 1445, 1460, 1531, 2070
BsgI	GTGCAG	2 cut(s)	1259, 1898
Bsh1285I	CGRYCG	1 cut(s)	2352
BshFI	GGCC	8 cut(s)	485, 934, 1870, 1998, 2160, 2351, 2494, 2618
BshNI	GGYRCC	2 cut(s)	992, 1059
BshTI	ACCGGT	1 cut(s)	1814
BsiEI	CGRYCG	1 cut(s)	2352
BsiHKAI	GWGCWC	2 cut(s)	751, 2376
BsiSI	CCGG	2 cut(s)	1815, 2578
BslFI	GGGAC	3 cut(s)	1372, 1591, 2580
BslI	CCNNNNNNNGG	7 cut(s)	902, 935, 1217, 1449, 1930, 2501, 2689
BsmAI	GTCTC	6 cut(s)	329, 450, 831, 1042, 1045, 2564
BsmFI	GGGAC	3 cut(s)	1372, 1591, 2580
BsmI	GAATGC	3 cut(s)	871, 1335, 1874
BsnI	GGCC	8 cut(s)	485, 934, 1870, 1998, 2160, 2351, 2494, 2618
Bso31I	GGTCTC	4 cut(s)	329, 450, 1045, 2564
Bsp119I	TTCGAA	2 cut(s)	672, 2132
Bsp1286I	GDGCHC	3 cut(s)	751, 1936, 2376
BspACI	CCGC	5 cut(s)	164, 1758, 1999, 2200, 2348
BspANI	GGCC	8 cut(s)	485, 934, 1870, 1998, 2160, 2351, 2494, 2618
BspCNI	CTCAG	9 cut(s)	190, 526, 745, 1261, 1572, 1792, 1938, 1971, 2690
BspLI	GGNNCC	5 cut(s)	714, 994, 1061, 1209, 2493
BspMAI	CTGCAG	1 cut(s)	1114
BspOI	GCTAGC	1 cut(s)	521
BspPI	GGATC	8 cut(s)	435, 545, 961, 1202, 1215, 1798, 1948, 2524
BspT104I	TTCGAA	2 cut(s)	672, 2132
BspT107I	GGYRCC	2 cut(s)	992, 1059
BspTNI	GGTCTC	4 cut(s)	329, 450, 1045, 2564
BsrDI	GCAATG	1 cut(s)	1197
BsrFI	RCCGGY	1 cut(s)	1814
BsrI	ACTGG	3 cut(s)	449, 1332, 1346
BssAI	RCCGGY	1 cut(s)	1814
BssECI	CCNNGG	5 cut(s)	929, 1055, 1425, 1834, 2290
BssNI	GRCGYC	2 cut(s)	993, 2569
BssT1I	CCWWGG	3 cut(s)	929, 1425, 2290
Bst2UI	CCWGG	5 cut(s)	14, 936, 960, 971, 1056
Bst6I	CTCTTC	4 cut(s)	332, 1043, 1743, 2168
BstACI	GRCGYC	2 cut(s)	993, 2569
BstBAI	YACGTR	2 cut(s)	746, 950
BstBI	TTCGAA	2 cut(s)	672, 2132
BstC8I	GCNNGC	6 cut(s)	519, 1383, 1859, 1872, 2081, 2088
BstDSI	CCRYGG	1 cut(s)	1834
BstENI	CCTNNNNNAGG	1 cut(s)	933
BstF5I	GGATG	9 cut(s)	34, 166, 955, 1134, 1336, 1844, 2054, 2118, 2217
BstH2I	RGCGCY	2 cut(s)	996, 2020
BstHHI	GCGC	4 cut(s)	238, 822, 995, 2019
BstMAI	GTCTC	6 cut(s)	329, 450, 831, 1042, 1045, 2564
BstMCI	CGRYCG	1 cut(s)	2352
BstMWI	GCNNNNNNNGC	8 cut(s)	170, 230, 514, 875, 1091, 1867, 2239, 2357
BstNI	CCWGG	5 cut(s)	14, 936, 960, 971, 1056
BstNSI	RCATGY	2 cut(s)	53, 1861
BstSCI	CCNGG	5 cut(s)	12, 934, 958, 969, 1054
BstSFI	CTRYAG	3 cut(s)	66, 1110, 1396
BstSLI	GKGCMC	2 cut(s)	751, 1936
BstV1I	GCAGC	7 cut(s)	214, 220, 643, 1445, 1460, 1531, 2070
BstV2I	GAAGAC	2 cut(s)	1760, 2617
BstX2I	RGATCY	5 cut(s)	399, 1207, 1225, 1498, 1940
BstYI	RGATCY	5 cut(s)	399, 1207, 1225, 1498, 1940
BstZI	CGGCCG	1 cut(s)	2349
Bsu36I	CCTNAGG	2 cut(s)	1559, 1925
BsuRI	GGCC	8 cut(s)	485, 934, 1870, 1998, 2160, 2351, 2494, 2618
BtgI	CCRYGG	1 cut(s)	1834
BtgZI	GCGATG	1 cut(s)	2053
BtsCI	GGATG	9 cut(s)	34, 166, 955, 1134, 1336, 1844, 2054, 2118, 2217
BtsI	GCAGTG	2 cut(s)	576, 1828
BtsIMutI	CAGTG	6 cut(s)	57, 75, 576, 1797, 1828, 2331
Cac8I	GCNNGC	6 cut(s)	519, 1383, 1859, 1872, 2081, 2088
CaiI	CAGNNNCTG	2 cut(s)	233, 1799
CfoI	GCGC	4 cut(s)	238, 822, 995, 2019
Cfr10I	RCCGGY	1 cut(s)	1814
Cfr13I	GGNCC	2 cut(s)	1343, 2492
CseI	GACGC	1 cut(s)	2577
Csp6I	GTAC	3 cut(s)	543, 1060, 1981
CspAI	ACCGGT	1 cut(s)	1814
CspCI	CAANNNNNGTGG	2 cut(s)	2210, 2245
CviQI	GTAC	3 cut(s)	543, 1060, 1981
DinI	GGCGCC	1 cut(s)	994
EaeI	YGGCCR	3 cut(s)	483, 932, 2349
EagI	CGGCCG	1 cut(s)	2349
Eam1104I	CTCTTC	4 cut(s)	332, 1043, 1743, 2168
EarI	CTCTTC	4 cut(s)	332, 1043, 1743, 2168
Ecl136II	GAGCTC	1 cut(s)	2374
EclXI	CGGCCG	1 cut(s)	2349
Eco130I	CCWWGG	3 cut(s)	929, 1425, 2290
Eco147I	AGGCCT	1 cut(s)	1870
Eco24I	GRGCYC	1 cut(s)	2376
Eco31I	GGTCTC	4 cut(s)	329, 450, 1045, 2564
Eco32I	GATATC	1 cut(s)	1807
Eco47I	GGWCC	1 cut(s)	1343
Eco47III	AGCGCT	1 cut(s)	2018
Eco52I	CGGCCG	1 cut(s)	2349
Eco53kI	GAGCTC	1 cut(s)	2374
Eco57I	CTGAAG	1 cut(s)	1997
Eco72I	CACGTG	2 cut(s)	746, 950
Eco81I	CCTNAGG	2 cut(s)	1559, 1925
EcoICRI	GAGCTC	1 cut(s)	2374
EcoNI	CCTNNNNNAGG	1 cut(s)	933
EcoRI	GAATTC	2 cut(s)	36, 848
EcoRII	CCWGG	5 cut(s)	12, 934, 958, 969, 1054
EcoRV	GATATC	1 cut(s)	1807
EcoT14I	CCWWGG	3 cut(s)	929, 1425, 2290
EcoT38I	GRGCYC	1 cut(s)	2376
EgeI	GGCGCC	1 cut(s)	994
EheI	GGCGCC	1 cut(s)	994
ErhI	CCWWGG	3 cut(s)	929, 1425, 2290
FalI	AAGNNNNNCTT	2 cut(s)	2498, 2530
FaqI	GGGAC	3 cut(s)	1372, 1591, 2580
FauNDI	CATATG	1 cut(s)	392
FbaI	TGATCA	4 cut(s)	312, 573, 1153, 2382
FblI	GTMKAC	3 cut(s)	65, 1658, 1963
FokI	GGATG	9 cut(s)	41, 173, 942, 1121, 1343, 1851, 2041, 2105, 2204
FriOI	GRGCYC	1 cut(s)	2376
FspBI	CTAG	4 cut(s)	45, 270, 518, 2184
FspI	TGCGCA	1 cut(s)	237
GlaI	GCGC	4 cut(s)	237, 821, 994, 2018
GsuI	CTGGAG	2 cut(s)	432, 1024
HaeII	RGCGCY	2 cut(s)	996, 2020
HaeIII	GGCC	8 cut(s)	485, 934, 1870, 1998, 2160, 2351, 2494, 2618
HapII	CCGG	2 cut(s)	1815, 2578
HgaI	GACGC	1 cut(s)	2577
HhaI	GCGC	4 cut(s)	238, 822, 995, 2019
Hin1I	GRCGYC	2 cut(s)	993, 2569
Hin6I	GCGC	4 cut(s)	236, 820, 993, 2017
HinP1I	GCGC	4 cut(s)	236, 820, 993, 2017
HincII	GTYRAC	2 cut(s)	1165, 1315
HindII	GTYRAC	2 cut(s)	1165, 1315
HindIII	AAGCTT	2 cut(s)	1417, 2484
HpaI	GTTAAC	2 cut(s)	1165, 1315
HpaII	CCGG	2 cut(s)	1815, 2578
HphI	GGTGA	2 cut(s)	515, 2539
Hpy188I	TCNGA	8 cut(s)	646, 694, 1251, 1507, 1517, 1906, 2403, 2461
Hpy188III	TCNNGA	9 cut(s)	346, 538, 1041, 1145, 1184, 1201, 1822, 2302, 2644
HpyAV	CCTTC	9 cut(s)	127, 519, 781, 808, 1416, 2059, 2108, 2530, 2543
HpyCH4IV	ACGT	3 cut(s)	745, 949, 1161
HpyF10VI	GCNNNNNNNGC	8 cut(s)	170, 230, 514, 875, 1091, 1867, 2239, 2357
HpySE526I	ACGT	3 cut(s)	745, 949, 1161
Hsp92I	GRCGYC	2 cut(s)	993, 2569
HspAI	GCGC	4 cut(s)	236, 820, 993, 2017
KasI	GGCGCC	1 cut(s)	992
KpnI	GGTACC	1 cut(s)	1063
Ksp22I	TGATCA	4 cut(s)	312, 573, 1153, 2382
KspAI	GTTAAC	2 cut(s)	1165, 1315
LmnI	GCTCC	4 cut(s)	526, 817, 1534, 1894
Lsp1109I	GCAGC	7 cut(s)	214, 220, 643, 1445, 1460, 1531, 2070
LweI	GCATC	9 cut(s)	14, 151, 1439, 1510, 1531, 1815, 2226, 2347, 2452
MaeI	CTAG	4 cut(s)	45, 270, 518, 2184
MaeII	ACGT	3 cut(s)	745, 949, 1161
MaeIII	GTNAC	5 cut(s)	343, 950, 1274, 1795, 2335
MfeI	CAATTG	1 cut(s)	735
MflI	RGATCY	5 cut(s)	399, 1207, 1225, 1498, 1940
MhlI	GDGCHC	3 cut(s)	751, 1936, 2376
MlsI	TGGCCA	1 cut(s)	934
MluNI	TGGCCA	1 cut(s)	934
Mly113I	GGCGCC	1 cut(s)	993
MlyI	GAGTC	4 cut(s)	351, 1664, 1689, 2575
MmeI	TCCRAC	6 cut(s)	13, 110, 405, 1719, 1760, 2609
Mox20I	TGGCCA	1 cut(s)	934
MscI	TGGCCA	1 cut(s)	934
MseI	TTAA	8 cut(s)	1164, 1314, 1554, 1709, 1811, 1896, 2031, 2713
MslI	CAYNNNNRTG	2 cut(s)	1833, 2186
Msp20I	TGGCCA	1 cut(s)	934
MspI	CCGG	2 cut(s)	1815, 2578
MspR9I	CCNGG	5 cut(s)	14, 936, 960, 971, 1056
MunI	CAATTG	1 cut(s)	735
Mva1269I	GAATGC	3 cut(s)	871, 1335, 1874
MvaI	CCWGG	5 cut(s)	14, 936, 960, 971, 1056
MwoI	GCNNNNNNNGC	8 cut(s)	170, 230, 514, 875, 1091, 1867, 2239, 2357
NarI	GGCGCC	1 cut(s)	993
NdeI	CATATG	1 cut(s)	392
NheI	GCTAGC	1 cut(s)	517
NlaIV	GGNNCC	5 cut(s)	714, 994, 1061, 1209, 2493
NmuCI	GTSAC	5 cut(s)	343, 950, 1274, 1795, 2335
NsbI	TGCGCA	1 cut(s)	237
NspI	RCATGY	2 cut(s)	53, 1861
NspV	TTCGAA	2 cut(s)	672, 2132
OliI	CACNNNNGTG	2 cut(s)	1833, 2186
PaeI	GCATGC	1 cut(s)	1861
PceI	AGGCCT	1 cut(s)	1870
PciI	ACATGT	1 cut(s)	49
PctI	GAATGC	3 cut(s)	871, 1335, 1874
PfeI	GAWTC	9 cut(s)	92, 100, 115, 217, 349, 674, 1688, 2134, 2404
PflFI	GACNNNGTC	1 cut(s)	1968
PflMI	CCANNNNNTGG	3 cut(s)	902, 1217, 2501
PinAI	ACCGGT	1 cut(s)	1814
PleI	GAGTC	4 cut(s)	350, 1663, 1688, 2575
PluTI	GGCGCC	1 cut(s)	996
PmaCI	CACGTG	2 cut(s)	746, 950
PmlI	CACGTG	2 cut(s)	746, 950
PpsI	GAGTC	4 cut(s)	350, 1663, 1688, 2575
Ppu21I	YACGTR	2 cut(s)	746, 950
PscI	ACATGT	1 cut(s)	49
PshBI	ATTAAT	2 cut(s)	1709, 1896
PsiI	TTATAA	1 cut(s)	296
Psp124BI	GAGCTC	1 cut(s)	2376
Psp6I	CCWGG	5 cut(s)	12, 934, 958, 969, 1054
PspCI	CACGTG	2 cut(s)	746, 950
PspGI	CCWGG	5 cut(s)	12, 934, 958, 969, 1054
PspN4I	GGNNCC	5 cut(s)	714, 994, 1061, 1209, 2493
PspPI	GGNCC	2 cut(s)	1343, 2492
PstI	CTGCAG	1 cut(s)	1114
PstNI	CAGNNNCTG	2 cut(s)	233, 1799
PsuI	RGATCY	5 cut(s)	399, 1207, 1225, 1498, 1940
PsyI	GACNNNGTC	1 cut(s)	1968
RsaI	GTAC	3 cut(s)	544, 1061, 1982
RsaNI	GTAC	3 cut(s)	543, 1060, 1981
RseI	CAYNNNNRTG	2 cut(s)	1833, 2186
SacI	GAGCTC	1 cut(s)	2376
SaqAI	TTAA	8 cut(s)	1164, 1314, 1554, 1709, 1811, 1896, 2031, 2713
Sau96I	GGNCC	2 cut(s)	1343, 2492
SchI	GAGTC	4 cut(s)	351, 1664, 1689, 2575
ScrFI	CCNGG	5 cut(s)	14, 936, 960, 971, 1056
SduI	GDGCHC	3 cut(s)	751, 1936, 2376
SfaNI	GCATC	9 cut(s)	14, 151, 1439, 1510, 1531, 1815, 2226, 2347, 2452
SfcI	CTRYAG	3 cut(s)	66, 1110, 1396
SfoI	GGCGCC	1 cut(s)	994
SfuI	TTCGAA	2 cut(s)	672, 2132
SinI	GGWCC	1 cut(s)	1343
SmiMI	CAYNNNNRTG	2 cut(s)	1833, 2186
SmlI	CTYRAG	3 cut(s)	1864, 2003, 2300
SmoI	CTYRAG	3 cut(s)	1864, 2003, 2300
SpeI	ACTAGT	1 cut(s)	2183
SphI	GCATGC	1 cut(s)	1861
SseBI	AGGCCT	1 cut(s)	1870
SsiI	CCGC	5 cut(s)	164, 1758, 1999, 2200, 2348
SspDI	GGCGCC	1 cut(s)	992
SspMI	CTAG	4 cut(s)	45, 270, 518, 2184
SstI	GAGCTC	1 cut(s)	2376
StuI	AGGCCT	1 cut(s)	1870
StyD4I	CCNGG	5 cut(s)	12, 934, 958, 969, 1054
StyI	CCWWGG	3 cut(s)	929, 1425, 2290
TaiI	ACGT	3 cut(s)	748, 952, 1164
TaqI	TCGA	9 cut(s)	118, 340, 549, 672, 1024, 1270, 2132, 2670, 2706
TatI	WGTACW	1 cut(s)	542
TauI	GCSGC	3 cut(s)	167, 2001, 2351
TfiI	GAWTC	9 cut(s)	92, 100, 115, 217, 349, 674, 1688, 2134, 2404
Tru1I	TTAA	8 cut(s)	1164, 1314, 1554, 1709, 1811, 1896, 2031, 2713
Tru9I	TTAA	8 cut(s)	1164, 1314, 1554, 1709, 1811, 1896, 2031, 2713
TscAI	CASTG	6 cut(s)	64, 75, 583, 1804, 1835, 2338
TseFI	GTSAC	5 cut(s)	343, 950, 1274, 1795, 2335
TseI	GCWGC	7 cut(s)	202, 233, 656, 1458, 1473, 1544, 2083
Tsp45I	GTSAC	5 cut(s)	343, 950, 1274, 1795, 2335
TspGWI	ACGGA	2 cut(s)	41, 2705
TspRI	CASTG	6 cut(s)	64, 75, 583, 1804, 1835, 2338
Tth111I	GACNNNGTC	1 cut(s)	1968
Van91I	CCANNNNNTGG	3 cut(s)	902, 1217, 2501
VneI	GTGCAC	1 cut(s)	747
VpaK11BI	GGWCC	1 cut(s)	1343
VspI	ATTAAT	2 cut(s)	1709, 1896
XagI	CCTNNNNNAGG	1 cut(s)	933
XapI	RAATTY	6 cut(s)	36, 189, 695, 728, 848, 2111
XceI	RCATGY	2 cut(s)	53, 1861
XcmI	CCANNNNNNNNNTGG	3 cut(s)	903, 977, 1076
XmiI	GTMKAC	3 cut(s)	65, 1658, 1963
XspI	CTAG	4 cut(s)	45, 270, 518, 2184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.