Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0010642

Physical Location & Seq

Genomic Coordinates Reverse (-)

8178142 .. 8183341

Gene Structure 5200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G007740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2937 bp

ATGATGCAATCTGAGGATCATCATCATCATCTATGCAGTACCTGTGGTGATGCCAATGGGGAGGTGTTTGTGGCTTGCCATGAATGCAATTCCCCTATTTGCAGGGCCTGTTTTGATGAGGATGTCAAGGAGGGGCGCAAAGTTTGCTTGCAGTGTGGCACTGCCTATGATGAGAAGTTACTGGCTGAGCACGAAAAAAAGGTATCCGGCACCCGATCCACAATGGCATCTCACCTGGATAATGCTACGGATGTTGGAATTCATGCTAGACATGTCAGCACTGTGTCTACAGTGGATAGTGAATATAATGATGAATCTGGGAATCCAATATGGAAGAATCGAGTAGAGAGTTGGAAGGATAAAAAGAGCAAGAAGAAAAAGGATGCGGCAAAGGCAGAAAAGGTGGCCGAAATTCCACCTGAGCAGCAAATGGCAGAGAATCTTGCCCCAGAAGCTGCGCAACCACTTTCAACTGTCGTTCCACTTCCATCTAGTAAAATCACACCATACAGAATTATAATAATTATGCGACTGATCATTCTTGGTCTCTTCTTCCATTATCGAGTCACGAATCCTGTTGATAGTGCTTATGGTCTATGGCTCACTTCTATCATATGTGAGATCTGGTTTGCTTTTTCTTGGGTGTTGGATCAGTTTCCTAAGTGGTCTCCAGTTAGTAGGATTACATATATTGACACTTTATCGGCCAGATTTGAAAGAGAGGGTGAGCTTTCTCAGCTAGCTCCTGTGGATTTCTTCGTGAGTACAGTCGATCCATTGAAAGAACCACCCTTGATCACTGCCAATACTGTGCTTTCCATTCTTGCTATTGACTATCCTGTGGAGAAAGTTTCCTGCTATGTGTCTGATGACGGTGCTGCCATGCTTAGTTTCGAATCTCTTGTAGAAACATCTGAATTTGCAAGAAAGTGGGTTCCATTCTGCAAAAAATTCTCGATTGAACCACGTGCACCTGAGTTCTACTTCTCACAGAAGATTGACTACTTGAAGGATAAAGTGCAACCATCTTTTGTGAAGGAGCGCAGATCAATGAAAAGAGACTATGAGGAATTCAAAGTGAGAATGAATGCTTTGGTAGCAAAGGCTCAAAAGACACCAGAAGATGGCTGGACTATGCAAGATGGAACACCTTGGCCAGGAAATAACTCACGTGACCATCCTGGCATGATCCAGGTTTTTCTTGGACATAGTGGCGCCCTTGACATTGAGGGAAATGAGCTTCCTCGATTGGTTTATGTCTCCAGAGAGAAGAGACCTGGGTACCAACACCACAAGAAAGCTGGTGCTGAAAATGCTCTGGTAAGGGTGTCTGCAGTTCTCACAAATGCCCCATTCATCCTCAATCTTGACTGTGATCACTACGTTAACAACAGCAAGGCAATTCGTGAGGCAATGTGCTTCTTGATGGATCCACAAGTTGGTAGAGATCTATGTTATGTGCAGTTTCCTCAGAGATTTGATGGCATTGATCGAAGTGACAGATATGCCAATCGCAATACAGTTTTCTTTGATGTTAACATGAAAGGACTGGATGGCATTCAAGGACCAGTATATGTGGGGACAGGTTGTTGTTTCAATAGGCAGGCACTTTATGGCTATAGTCCTCCTTCTATGCCAAGCTTATCCAAGGCATCGTCCTCGTCCTGTTCTTGGTGTGGCTGCTTCTCTTGTTGCTGCCCCTCCAAGAAACCAACTAAAGATCTGTCAGAGGCTTTCCGAGATGCAAAACGAGAGGAGCTTGATGCTGCCATTTTTAACCTCAGGGAGATTGAAAACTACGATGAGTATGAGAGGTCAATGCTGATGTCCCAGACGAGCTTTGAGAAAACTTTTGGCTTATCAACTGTATTTATTGAGTCTACACTAATGGAGTATGGAGGAGTCGCTGAATCCTCCAACCCATCACTATTAATCAAGGAGGCAATTCATGTCATTAGCTGTGGTTATGAAGAGAAGACCGCATGGGGAAAAGAGATTGGTTGGATTTATGGATCAGTCACTGAGGATATCTTAACCGGTTTCAAGATGCACTGCCGTGGATGGAGATCAGTTTACTGCATGCCCTTGAGGCCTGCATTCAAAGGTTCAGCTCCCATTAATCTTTCTGATCGTCTGCACCAAGTCCTCAGGTGGGCACTTGGATCTGTGGAAATCTTCCTCAGTAGACATTGTCCTCTCTGGTACGGGTTTGCAGGAGGCCGCCTCAAGTGGCTTCAGCGCCTGGCATACATTAACACCATTGTTTACCCCTTCACATCCCTCCCTCTCATCGCTTACTGCTCGCTGCCTGCAATATGCCTTCTCACAGGAAAATTCATCATCCCAACACTTTCGAATCTAGCAAGTGTTTTGTTTCTTGGCCTCTTCCTCTCCATCATTCTCACCAGTGTGATTGAGTTGCGGTGGAGTGGTGTCAGCATCCAAGACTTGTGGCGTAATGAGCAGTTCTGGGTCATAGGAGGTGTTTCAGCCCATCTCTTTGCTGTTTTCCAAGGTTTCCTCAAGATGTTGGCTGGTGTGGACACCAACTTCACTGTCACATCTAAAGCAGCCGAAGATGCCGACTTCGGAGAGCTCTATATGATCAAATGGACTACACTTCTGATTCCCCCAACTACACTCCTCATTGTGAACATGGTTGGTGTTGTAGCTGGATTTTCTGATGCACTAAACAAGGGTTATGAAGCTTGGGGGCCACTATTTGGCAAGGTTTTCTTTGCCTTCTGGGTGATTCTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGACGCCAAAACCGGACTCCAACCATTGTTGTTTTGTGGTCAATTCTGTTGGCCTCTGTCTTCTCTCTTGTTTGGGTCAGGATAAACCCATTTGTGAGCAAAGTCGATAACTCAGCCCTTACTACAGACTGCATTTCCATCGACTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0006970 GO:0007049 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0010035 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0016760 GO:0022402 GO:0030243 GO:0030244 GO:0030312 GO:0033692 GO:0034637 GO:0034645 GO:0035251 GO:0042221 GO:0042546 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0050832 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0051704 GO:0051707 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:1901576 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt WD40 zf-UDP

Protein Analysis

978

Amino Acids

110.09

Weight (kDa)

6.43

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UDP	PF14569	6 - 58	4.6e-12	Zinc-binding RING-finger
Cellulose_synt	PF03552	250 - 969	0.0	Cellulose synthase
Glyco_trans_2_3	PF13632	665 - 768	5.2e-06	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18780
fragaria_vesca	FvH4_3g07420 FvH4_3g07420
malus_domestica	MD05G1296600.v1.1 MD10G1276500.v1.1
prunus_persica	Prupe.4G065700_v2.0.a1 Prupe.4G065700_v2.0.a1
pyrus_communis	pycom05g27510 pycom10g23090
rosa_chinensis	RchiOBHm_Chr5g0011441
rosa_laevigata	RLG00000031835
rosa_multiflora	Rmu_co8341655.1_g000001 Rmu_sc0009001.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065000
rosa_rugosa	Rorug04G0457000
rosa_samantha	Rh5AG088900 Rh5BG084100 Rh5CG097600 Rh5DG084100
rosa_wichuraiana	Rw5G007740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	518
Acc16I	TGCGCA	1 cut(s)	459
Acc65I	GGTACC	1 cut(s)	1281
AccB1I	GGYRCC	3 cut(s)	209, 1214, 1281
AccB7I	CCANNNNNTGG	3 cut(s)	1124, 1439, 2723
AccI	GTMKAC	3 cut(s)	287, 1880, 2185
AciI	CCGC	4 cut(s)	386, 1980, 2221, 2422
AclWI	GGATC	9 cut(s)	24, 210, 657, 767, 1183, 1424, 1437, 2020, 2170
AcoI	YGGCCR	3 cut(s)	405, 705, 1154
AcsI	RAATTY	6 cut(s)	258, 411, 917, 950, 1070, 2333
AcuI	CTGAAG	1 cut(s)	2219
AcvI	CACGTG	2 cut(s)	968, 1172
AcyI	GRCGYC	2 cut(s)	1215, 2791
AfaI	GTAC	4 cut(s)	40, 766, 1283, 2204
AfiI	CCNNNNNNNGG	6 cut(s)	1124, 1157, 1439, 1671, 2152, 2723
AflIII	ACRYGT	1 cut(s)	271
AgeI	ACCGGT	1 cut(s)	2036
AjnI	CCWGG	6 cut(s)	234, 1156, 1180, 1191, 1276, 2241
AleI	CACNNNNGTG	2 cut(s)	2055, 2408
Alw21I	GWGCWC	3 cut(s)	192, 973, 2598
Alw26I	GTCTC	6 cut(s)	551, 672, 1053, 1264, 1267, 2786
Alw44I	GTGCAC	1 cut(s)	969
AlwI	GGATC	9 cut(s)	24, 210, 657, 767, 1183, 1424, 1437, 2020, 2170
AlwNI	CAGNNNCTG	5 cut(s)	42, 108, 455, 2021, 2242
AoxI	GGCC	9 cut(s)	105, 405, 705, 1154, 2090, 2218, 2380, 2714, 2838
ApaLI	GTGCAC	1 cut(s)	969
ApeKI	GCWGC	8 cut(s)	424, 455, 878, 1680, 1695, 1766, 2305, 2570
ApoI	RAATTY	6 cut(s)	258, 411, 917, 950, 1070, 2333
AseI	ATTAAT	2 cut(s)	1931, 2118
AsiGI	ACCGGT	1 cut(s)	2036
Asp718I	GGTACC	1 cut(s)	1281
AspLEI	GCGC	5 cut(s)	138, 460, 1044, 1217, 2241
AspS9I	GGNCC	3 cut(s)	105, 1565, 2714
AsuHPI	GGTGA	5 cut(s)	59, 224, 737, 2395, 2761
AsuII	TTCGAA	2 cut(s)	894, 2354
AsuNHI	GCTAGC	1 cut(s)	739
AvaII	GGWCC	1 cut(s)	1565
AxyI	CCTNAGG	2 cut(s)	1781, 2147
BaeGI	GKGCMC	2 cut(s)	973, 2158
BaeI	ACNNNNGTAYC	2 cut(s)	1265, 1298
BalI	TGGCCA	1 cut(s)	1156
BamHI	GGATCC	1 cut(s)	1429
BanI	GGYRCC	3 cut(s)	209, 1214, 1281
BanII	GRGCYC	1 cut(s)	2598
BarI	GAAGNNNNNNTAC	2 cut(s)	986, 1018
BbrPI	CACGTG	2 cut(s)	968, 1172
BbsI	GAAGAC	2 cut(s)	1982, 2839
Bbv12I	GWGCWC	3 cut(s)	192, 973, 2598
BbvI	GCAGC	8 cut(s)	436, 442, 865, 1667, 1682, 1753, 2292, 2582
BceAI	ACGGC	1 cut(s)	2040
BcgI	CGANNNNNNTGC	3 cut(s)	1641, 1675, 2908
BciT130I	CCWGG	6 cut(s)	236, 1158, 1182, 1193, 1278, 2243
BciVI	GTATCC	1 cut(s)	214
BclI	TGATCA	4 cut(s)	534, 795, 1375, 2604
BcoDI	GTCTC	6 cut(s)	551, 672, 1053, 1264, 1267, 2786
BfaI	CTAG	4 cut(s)	267, 492, 740, 2360
BfmI	CTRYAG	4 cut(s)	288, 1332, 1618, 2910
BfoI	RGCGCY	2 cut(s)	1218, 2242
BfuI	GTATCC	1 cut(s)	214
BglI	GCCNNNNNGGC	1 cut(s)	2089
BglII	AGATCT	3 cut(s)	621, 1447, 1720
BlpI	GCTNAGC	1 cut(s)	186
Bme1390I	CCNGG	6 cut(s)	236, 1158, 1182, 1193, 1278, 2243
Bme18I	GGWCC	1 cut(s)	1565
BmgT120I	GGNCC	3 cut(s)	105, 1565, 2714
BmiI	GGNNCC	6 cut(s)	211, 936, 1216, 1283, 1431, 2715
BmrFI	CCNGG	6 cut(s)	236, 1158, 1182, 1193, 1278, 2243
BmtI	GCTAGC	1 cut(s)	743
BpiI	GAAGAC	2 cut(s)	1982, 2839
BplI	GAGNNNNNCTC	2 cut(s)	2208, 2240
BpmI	CTGGAG	2 cut(s)	654, 1246
Bpu10I	CCTNAGC	1 cut(s)	420
Bpu1102I	GCTNAGC	1 cut(s)	186
Bpu14I	TTCGAA	2 cut(s)	894, 2354
BpuEI	CTTGAG	3 cut(s)	2107, 2210, 2507
BsaAI	YACGTR	2 cut(s)	968, 1172
BsaBI	GATNNNNATC	2 cut(s)	21, 2065
BsaHI	GRCGYC	2 cut(s)	1215, 2791
BsaI	GGTCTC	4 cut(s)	551, 672, 1267, 2786
BsaJI	CCNNGG	5 cut(s)	1151, 1277, 1647, 2056, 2512
BsaWI	WCCGGW	2 cut(s)	2036, 2799
Bsc4I	CCNNNNNNNGG	6 cut(s)	1124, 1157, 1439, 1671, 2152, 2723
Bse118I	RCCGGY	1 cut(s)	2036
Bse1I	ACTGG	5 cut(s)	186, 671, 1554, 1568, 2406
Bse21I	CCTNAGG	2 cut(s)	1781, 2147
Bse3DI	GCAATG	1 cut(s)	1419
Bse8I	GATNNNNATC	2 cut(s)	21, 2065
BseBI	CCWGG	6 cut(s)	236, 1158, 1182, 1193, 1278, 2243
BseDI	CCNNGG	5 cut(s)	1151, 1277, 1647, 2056, 2512
BseJI	GATNNNNATC	2 cut(s)	21, 2065
BseLI	CCNNNNNNNGG	6 cut(s)	1124, 1157, 1439, 1671, 2152, 2723
BseMI	GCAATG	1 cut(s)	1419
BseNI	ACTGG	5 cut(s)	186, 671, 1554, 1568, 2406
BseRI	GAGGAG	3 cut(s)	1769, 1914, 2633
BseSI	GKGCMC	2 cut(s)	973, 2158
BseXI	GCAGC	8 cut(s)	436, 442, 865, 1667, 1682, 1753, 2292, 2582
BsgI	GTGCAG	2 cut(s)	1481, 2120
BshFI	GGCC	9 cut(s)	107, 407, 707, 1156, 2092, 2220, 2382, 2716, 2840
BshNI	GGYRCC	3 cut(s)	209, 1214, 1281
BshTI	ACCGGT	1 cut(s)	2036
BsiHKAI	GWGCWC	3 cut(s)	192, 973, 2598
BsiSI	CCGG	3 cut(s)	207, 2037, 2800
BslFI	GGGAC	3 cut(s)	1594, 1813, 2802
BslI	CCNNNNNNNGG	6 cut(s)	1124, 1157, 1439, 1671, 2152, 2723
BsmAI	GTCTC	6 cut(s)	551, 672, 1053, 1264, 1267, 2786
BsmFI	GGGAC	3 cut(s)	1594, 1813, 2802
BsmI	GAATGC	4 cut(s)	89, 1093, 1557, 2096
BsnI	GGCC	9 cut(s)	107, 407, 707, 1156, 2092, 2220, 2382, 2716, 2840
Bso31I	GGTCTC	4 cut(s)	551, 672, 1267, 2786
Bsp119I	TTCGAA	2 cut(s)	894, 2354
Bsp1286I	GDGCHC	4 cut(s)	192, 973, 2158, 2598
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	4 cut(s)	386, 1980, 2221, 2422
BspANI	GGCC	9 cut(s)	107, 407, 707, 1156, 2092, 2220, 2382, 2716, 2840
BspLI	GGNNCC	6 cut(s)	211, 936, 1216, 1283, 1431, 2715
BspMAI	CTGCAG	1 cut(s)	1336
BspOI	GCTAGC	1 cut(s)	743
BspPI	GGATC	9 cut(s)	24, 210, 657, 767, 1183, 1424, 1437, 2020, 2170
BspT104I	TTCGAA	2 cut(s)	894, 2354
BspT107I	GGYRCC	3 cut(s)	209, 1214, 1281
BspTNI	GGTCTC	4 cut(s)	551, 672, 1267, 2786
BsrDI	GCAATG	1 cut(s)	1419
BsrFI	RCCGGY	1 cut(s)	2036
BsrI	ACTGG	5 cut(s)	186, 671, 1554, 1568, 2406
BssAI	RCCGGY	1 cut(s)	2036
BssECI	CCNNGG	5 cut(s)	1151, 1277, 1647, 2056, 2512
BssNI	GRCGYC	2 cut(s)	1215, 2791
BssT1I	CCWWGG	3 cut(s)	1151, 1647, 2512
Bst2UI	CCWGG	6 cut(s)	236, 1158, 1182, 1193, 1278, 2243
Bst6I	CTCTTC	4 cut(s)	554, 1265, 1965, 2390
BstACI	GRCGYC	2 cut(s)	1215, 2791
BstAPI	GCANNNNNTGC	1 cut(s)	144
BstBAI	YACGTR	2 cut(s)	968, 1172
BstBI	TTCGAA	2 cut(s)	894, 2354
BstC8I	GCNNGC	8 cut(s)	76, 149, 741, 1605, 2081, 2094, 2303, 2310
BstDSI	CCRYGG	1 cut(s)	2056
BstENI	CCTNNNNNAGG	1 cut(s)	1155
BstH2I	RGCGCY	2 cut(s)	1218, 2242
BstHHI	GCGC	5 cut(s)	138, 460, 1044, 1217, 2241
BstMAI	GTCTC	6 cut(s)	551, 672, 1053, 1264, 1267, 2786
BstNI	CCWGG	6 cut(s)	236, 1158, 1182, 1193, 1278, 2243
BstNSI	RCATGY	2 cut(s)	275, 2083
BstSCI	CCNGG	6 cut(s)	234, 1156, 1180, 1191, 1276, 2241
BstSFI	CTRYAG	4 cut(s)	288, 1332, 1618, 2910
BstSLI	GKGCMC	2 cut(s)	973, 2158
BstV1I	GCAGC	8 cut(s)	436, 442, 865, 1667, 1682, 1753, 2292, 2582
BstV2I	GAAGAC	2 cut(s)	1982, 2839
BstX2I	RGATCY	5 cut(s)	621, 1429, 1447, 1720, 2162
BstYI	RGATCY	5 cut(s)	621, 1429, 1447, 1720, 2162
Bsu36I	CCTNAGG	2 cut(s)	1781, 2147
BsuI	GTATCC	1 cut(s)	214
BsuRI	GGCC	9 cut(s)	107, 407, 707, 1156, 2092, 2220, 2382, 2716, 2840
BtgI	CCRYGG	1 cut(s)	2056
BtgZI	GCGATG	1 cut(s)	2275
BtsI	GCAGTG	4 cut(s)	158, 159, 798, 2050
BtsIMutI	CAGTG	9 cut(s)	158, 159, 279, 297, 798, 2019, 2050, 2413, 2553
Cac8I	GCNNGC	8 cut(s)	76, 149, 741, 1605, 2081, 2094, 2303, 2310
CaiI	CAGNNNCTG	5 cut(s)	42, 108, 455, 2021, 2242
CfoI	GCGC	5 cut(s)	138, 460, 1044, 1217, 2241
Cfr10I	RCCGGY	1 cut(s)	2036
Cfr13I	GGNCC	3 cut(s)	105, 1565, 2714
CseI	GACGC	1 cut(s)	2799
Csp6I	GTAC	4 cut(s)	39, 765, 1282, 2203
CspAI	ACCGGT	1 cut(s)	2036
CspCI	CAANNNNNGTGG	2 cut(s)	2432, 2467
CviQI	GTAC	4 cut(s)	39, 765, 1282, 2203
DinI	GGCGCC	1 cut(s)	1216
EaeI	YGGCCR	3 cut(s)	405, 705, 1154
Eam1104I	CTCTTC	4 cut(s)	554, 1265, 1965, 2390
EarI	CTCTTC	4 cut(s)	554, 1265, 1965, 2390
Ecl136II	GAGCTC	1 cut(s)	2596
Eco130I	CCWWGG	3 cut(s)	1151, 1647, 2512
Eco147I	AGGCCT	1 cut(s)	2092
Eco24I	GRGCYC	1 cut(s)	2598
Eco31I	GGTCTC	4 cut(s)	551, 672, 1267, 2786
Eco32I	GATATC	1 cut(s)	2029
Eco47I	GGWCC	1 cut(s)	1565
Eco53kI	GAGCTC	1 cut(s)	2596
Eco57I	CTGAAG	1 cut(s)	2219
Eco72I	CACGTG	2 cut(s)	968, 1172
Eco81I	CCTNAGG	2 cut(s)	1781, 2147
EcoICRI	GAGCTC	1 cut(s)	2596
EcoNI	CCTNNNNNAGG	1 cut(s)	1155
EcoO109I	RGGNCCY	1 cut(s)	105
EcoRI	GAATTC	2 cut(s)	258, 1070
EcoRII	CCWGG	6 cut(s)	234, 1156, 1180, 1191, 1276, 2241
EcoRV	GATATC	1 cut(s)	2029
EcoT14I	CCWWGG	3 cut(s)	1151, 1647, 2512
EcoT38I	GRGCYC	1 cut(s)	2598
EgeI	GGCGCC	1 cut(s)	1216
EheI	GGCGCC	1 cut(s)	1216
ErhI	CCWWGG	3 cut(s)	1151, 1647, 2512
FalI	AAGNNNNNCTT	2 cut(s)	2720, 2752
FaqI	GGGAC	3 cut(s)	1594, 1813, 2802
FauNDI	CATATG	1 cut(s)	614
FbaI	TGATCA	4 cut(s)	534, 795, 1375, 2604
FblI	GTMKAC	3 cut(s)	287, 1880, 2185
FriOI	GRGCYC	1 cut(s)	2598
FspBI	CTAG	4 cut(s)	267, 492, 740, 2360
FspI	TGCGCA	1 cut(s)	459
GlaI	GCGC	5 cut(s)	137, 459, 1043, 1216, 2240
GsuI	CTGGAG	2 cut(s)	654, 1246
HaeII	RGCGCY	2 cut(s)	1218, 2242
HaeIII	GGCC	9 cut(s)	107, 407, 707, 1156, 2092, 2220, 2382, 2716, 2840
HapII	CCGG	3 cut(s)	207, 2037, 2800
HgaI	GACGC	1 cut(s)	2799
HhaI	GCGC	5 cut(s)	138, 460, 1044, 1217, 2241
Hin1I	GRCGYC	2 cut(s)	1215, 2791
Hin6I	GCGC	5 cut(s)	136, 458, 1042, 1215, 2239
HinP1I	GCGC	5 cut(s)	136, 458, 1042, 1215, 2239
HincII	GTYRAC	2 cut(s)	1387, 1537
HindII	GTYRAC	2 cut(s)	1387, 1537
HindIII	AAGCTT	2 cut(s)	1639, 2706
HpaI	GTTAAC	2 cut(s)	1387, 1537
HpaII	CCGG	3 cut(s)	207, 2037, 2800
HphI	GGTGA	5 cut(s)	59, 224, 737, 2395, 2761
HpyAV	CCTTC	7 cut(s)	349, 1003, 1030, 1638, 2281, 2330, 2752
HpyCH4IV	ACGT	3 cut(s)	967, 1171, 1383
HpySE526I	ACGT	3 cut(s)	967, 1171, 1383
Hsp92I	GRCGYC	2 cut(s)	1215, 2791
HspAI	GCGC	5 cut(s)	136, 458, 1042, 1215, 2239
KasI	GGCGCC	1 cut(s)	1214
KpnI	GGTACC	1 cut(s)	1285
Ksp22I	TGATCA	4 cut(s)	534, 795, 1375, 2604
KspAI	GTTAAC	2 cut(s)	1387, 1537
LmnI	GCTCC	4 cut(s)	748, 1039, 1756, 2116
Lsp1109I	GCAGC	8 cut(s)	436, 442, 865, 1667, 1682, 1753, 2292, 2582
MaeI	CTAG	4 cut(s)	267, 492, 740, 2360
MaeII	ACGT	3 cut(s)	967, 1171, 1383
MaeIII	GTNAC	6 cut(s)	177, 565, 1172, 1496, 2017, 2557
MflI	RGATCY	5 cut(s)	621, 1429, 1447, 1720, 2162
MhlI	GDGCHC	4 cut(s)	192, 973, 2158, 2598
MlsI	TGGCCA	1 cut(s)	1156
MluNI	TGGCCA	1 cut(s)	1156
Mly113I	GGCGCC	1 cut(s)	1215
MlyI	GAGTC	4 cut(s)	573, 1886, 1911, 2797
MmeI	TCCRAC	6 cut(s)	235, 332, 627, 1941, 1982, 2831
Mox20I	TGGCCA	1 cut(s)	1156
MscI	TGGCCA	1 cut(s)	1156
MseI	TTAA	8 cut(s)	1386, 1536, 1776, 1931, 2033, 2118, 2253, 2935
MslI	CAYNNNNRTG	2 cut(s)	2055, 2408
Msp20I	TGGCCA	1 cut(s)	1156
MspI	CCGG	3 cut(s)	207, 2037, 2800
MspR9I	CCNGG	6 cut(s)	236, 1158, 1182, 1193, 1278, 2243
Mva1269I	GAATGC	4 cut(s)	89, 1093, 1557, 2096
MvaI	CCWGG	6 cut(s)	236, 1158, 1182, 1193, 1278, 2243
NarI	GGCGCC	1 cut(s)	1215
NdeI	CATATG	1 cut(s)	614
NheI	GCTAGC	1 cut(s)	739
NlaIV	GGNNCC	6 cut(s)	211, 936, 1216, 1283, 1431, 2715
NmuCI	GTSAC	5 cut(s)	565, 1172, 1496, 2017, 2557
NsbI	TGCGCA	1 cut(s)	459
NspI	RCATGY	2 cut(s)	275, 2083
NspV	TTCGAA	2 cut(s)	894, 2354
OliI	CACNNNNGTG	2 cut(s)	2055, 2408
PaeI	GCATGC	1 cut(s)	2083
PceI	AGGCCT	1 cut(s)	2092
PciI	ACATGT	1 cut(s)	271
PctI	GAATGC	4 cut(s)	89, 1093, 1557, 2096
PflFI	GACNNNGTC	1 cut(s)	2190
PflMI	CCANNNNNTGG	3 cut(s)	1124, 1439, 2723
PinAI	ACCGGT	1 cut(s)	2036
PleI	GAGTC	4 cut(s)	572, 1885, 1910, 2797
PluTI	GGCGCC	1 cut(s)	1218
PmaCI	CACGTG	2 cut(s)	968, 1172
PmlI	CACGTG	2 cut(s)	968, 1172
PpsI	GAGTC	4 cut(s)	572, 1885, 1910, 2797
Ppu21I	YACGTR	2 cut(s)	968, 1172
PscI	ACATGT	1 cut(s)	271
PshBI	ATTAAT	2 cut(s)	1931, 2118
PsiI	TTATAA	1 cut(s)	518
Psp124BI	GAGCTC	1 cut(s)	2598
Psp6I	CCWGG	6 cut(s)	234, 1156, 1180, 1191, 1276, 2241
PspCI	CACGTG	2 cut(s)	968, 1172
PspGI	CCWGG	6 cut(s)	234, 1156, 1180, 1191, 1276, 2241
PspN4I	GGNNCC	6 cut(s)	211, 936, 1216, 1283, 1431, 2715
PspPI	GGNCC	3 cut(s)	105, 1565, 2714
PstI	CTGCAG	1 cut(s)	1336
PstNI	CAGNNNCTG	5 cut(s)	42, 108, 455, 2021, 2242
PsuI	RGATCY	5 cut(s)	621, 1429, 1447, 1720, 2162
PsyI	GACNNNGTC	1 cut(s)	2190
RsaI	GTAC	4 cut(s)	40, 766, 1283, 2204
RsaNI	GTAC	4 cut(s)	39, 765, 1282, 2203
RseI	CAYNNNNRTG	2 cut(s)	2055, 2408
SacI	GAGCTC	1 cut(s)	2598
SaqAI	TTAA	8 cut(s)	1386, 1536, 1776, 1931, 2033, 2118, 2253, 2935
Sau96I	GGNCC	3 cut(s)	105, 1565, 2714
SchI	GAGTC	4 cut(s)	573, 1886, 1911, 2797
ScrFI	CCNGG	6 cut(s)	236, 1158, 1182, 1193, 1278, 2243
SduI	GDGCHC	4 cut(s)	192, 973, 2158, 2598
SfcI	CTRYAG	4 cut(s)	288, 1332, 1618, 2910
SfoI	GGCGCC	1 cut(s)	1216
SfuI	TTCGAA	2 cut(s)	894, 2354
SinI	GGWCC	1 cut(s)	1565
SmiMI	CAYNNNNRTG	2 cut(s)	2055, 2408
SmlI	CTYRAG	3 cut(s)	2086, 2225, 2522
SmoI	CTYRAG	3 cut(s)	2086, 2225, 2522
SphI	GCATGC	1 cut(s)	2083
SseBI	AGGCCT	1 cut(s)	2092
SsiI	CCGC	4 cut(s)	386, 1980, 2221, 2422
SspDI	GGCGCC	1 cut(s)	1214
SspMI	CTAG	4 cut(s)	267, 492, 740, 2360
SstI	GAGCTC	1 cut(s)	2598
StuI	AGGCCT	1 cut(s)	2092
StyD4I	CCNGG	6 cut(s)	234, 1156, 1180, 1191, 1276, 2241
StyI	CCWWGG	3 cut(s)	1151, 1647, 2512
TaiI	ACGT	3 cut(s)	970, 1174, 1386
TatI	WGTACW	1 cut(s)	764
TauI	GCSGC	2 cut(s)	389, 2223
Tru1I	TTAA	8 cut(s)	1386, 1536, 1776, 1931, 2033, 2118, 2253, 2935
Tru9I	TTAA	8 cut(s)	1386, 1536, 1776, 1931, 2033, 2118, 2253, 2935
TscAI	CASTG	9 cut(s)	158, 166, 286, 297, 805, 2026, 2057, 2413, 2560
TseFI	GTSAC	5 cut(s)	565, 1172, 1496, 2017, 2557
TseI	GCWGC	8 cut(s)	424, 455, 878, 1680, 1695, 1766, 2305, 2570
Tsp45I	GTSAC	5 cut(s)	565, 1172, 1496, 2017, 2557
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	9 cut(s)	158, 166, 286, 297, 805, 2026, 2057, 2413, 2560
Tth111I	GACNNNGTC	1 cut(s)	2190
Van91I	CCANNNNNTGG	3 cut(s)	1124, 1439, 2723
VneI	GTGCAC	1 cut(s)	969
VpaK11BI	GGWCC	1 cut(s)	1565
VspI	ATTAAT	2 cut(s)	1931, 2118
XagI	CCTNNNNNAGG	1 cut(s)	1155
XapI	RAATTY	6 cut(s)	258, 411, 917, 950, 1070, 2333
XceI	RCATGY	2 cut(s)	275, 2083
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1125, 1199, 1298
XmiI	GTMKAC	3 cut(s)	287, 1880, 2185
XspI	CTAG	4 cut(s)	267, 492, 740, 2360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.