pycom05g27630

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0008195
Physical Location & Seq
Reverse (-)
28555775 .. 28558413
2639 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 954 bp
ATGGCAGCTCCTAAACCAGAAGAGATAAGCCATCCAGCAATGGACCAACTCCAAGGCTTAGAGTACTGCATTGACTCAAATCCCTCTTGGGGGGAAGCAATTGCTTTGGGGTTCCAGCACTACATTTTGGCTCTAGGAACTGCTGTGATGATCCCATCATTCCTTGTTCCTTTGATGGGTGGTGATGATGGTGACAAAGTGAGAGTAGTGCAGACTCTACTTTTTATTCAAGGAATCAACACCCTTCTACAAACATTGTTTGGAACCCGATTGCCAACCGTAATTGGAGGGTCTTACGCTTTCATGGTCCCGATAATATCCATAATTCATGATTCACGGTTGATGAAGATTGAGGACAGTCATGCGAGATTCCTTGACACCATGAAAGCAGTCCAAGGTGCTCTGATAGTAGCTTCAAGCATACAAATTGTTCTGGGATATAGTCAAATTTGGGCCATCTGTTCCAGGTTCTTCAGCCCGCTTGGAATGGTTCCGGTTATTTCCTTGGTGGGTTTTGGCCTGTTTGATAGAGGCTTCCCCGTGGTTGGAAAGTGTGTAGAAATTGGCATTCCCATGCTTATCCTTTTCGTAGCTTTCTCTCAGTACCTAAAGAACTTCCATGCAAGACAGCTACCAGTTTTAGAACGATTTGCTCTTCTTATATCAATCACAGTGATATGGGCATATGCACACCTCTTGACCGCCAGTGGTGCATACAAACACCGCCCAGACATAACCCAAGTCAATTGCCGAACTGACAGGGCCAACCTCATTTCTTCTGCTCCATGGATAAAAGTACCTTATCCTCTTCAATGGGGTGCCCCAACCTTTGATGCTGGTCATGCTTTTGGAATGATGGCAGCTGTTCTTGTTATCATCGATCGAGTCAACTGGAGCATACAAGGCTGCATCGCGTCTAGCAAGTGCCACAATACCTCCAGCTCATGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

318

Amino Acids

34.67

Weight (kDa)

7.65

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 32 - 293 3.5e-24 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 818
AccII CGCG 1 cut(s) 914
AciI CCGC 3 cut(s) 479, 702, 724
AclWI GGATC 1 cut(s) 145
AcsI RAATTY 1 cut(s) 447
AcuI CTGAAG 1 cut(s) 457
AfaI GTAC 3 cut(s) 65, 605, 798
AfiI CCNNNNNNNGG 4 cut(s) 89, 90, 176, 545
AgsI TTSAA 3 cut(s) 230, 417, 812
AjnI CCWGG 1 cut(s) 464
AluBI AGCT 6 cut(s) 8, 413, 593, 631, 863, 942
AluI AGCT 6 cut(s) 8, 413, 593, 631, 863, 942
Alw21I GWGCWC 1 cut(s) 403
AlwI GGATC 1 cut(s) 145
AoxI GGCC 3 cut(s) 453, 517, 762
ApeKI GCWGC 3 cut(s) 5, 860, 906
ApoI RAATTY 1 cut(s) 447
AspS9I GGNCC 4 cut(s) 43, 307, 453, 762
AsuHPI GGTGA 2 cut(s) 194, 203
AvaII GGWCC 2 cut(s) 43, 307
BaeGI GKGCMC 1 cut(s) 823
BanI GGYRCC 1 cut(s) 818
Bbv12I GWGCWC 1 cut(s) 403
BbvI GCAGC 3 cut(s) 17, 872, 893
BccI CCATC 6 cut(s) 39, 163, 169, 182, 464, 850
BciT130I CCWGG 1 cut(s) 466
BfaI CTAG 2 cut(s) 134, 918
BisI GCNGC 3 cut(s) 6, 861, 907
BlsI GCNGC 3 cut(s) 7, 862, 908
BmcAI AGTACT 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 466
Bme18I GGWCC 2 cut(s) 43, 307
BmgT120I GGNCC 4 cut(s) 43, 307, 453, 762
BmiI GGNNCC 5 cut(s) 113, 265, 309, 492, 820
BmrFI CCNGG 1 cut(s) 466
BmsI GCATC 2 cut(s) 823, 918
BpmI CTGGAG 2 cut(s) 913, 922
Bsa29I ATCGAT 1 cut(s) 879
BsaJI CCNNGG 5 cut(s) 52, 394, 504, 540, 785
BsaWI WCCGGW 1 cut(s) 493
BsaXI ACNNNNNCTCC 2 cut(s) 920, 950
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 90, 176, 545
Bse1I ACTGG 3 cut(s) 635, 705, 896
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 466
BseCI ATCGAT 1 cut(s) 879
BseDI CCNNGG 5 cut(s) 52, 394, 504, 540, 785
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 4 cut(s) 89, 90, 176, 545
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 614
BseNI ACTGG 3 cut(s) 635, 705, 896
BseSI GKGCMC 1 cut(s) 823
BseXI GCAGC 3 cut(s) 17, 872, 893
BsgI GTGCAG 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 914
Bsh1285I CGRYCG 1 cut(s) 883
BshFI GGCC 3 cut(s) 455, 519, 764
BshNI GGYRCC 1 cut(s) 818
BshVI ATCGAT 1 cut(s) 879
BsiEI CGRYCG 1 cut(s) 883
BsiHKAI GWGCWC 1 cut(s) 403
BsiSI CCGG 1 cut(s) 494
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 4 cut(s) 89, 90, 176, 545
BsmFI GGGAC 1 cut(s) 293
BsmI GAATGC 1 cut(s) 567
BsnI GGCC 3 cut(s) 455, 519, 764
Bsp1286I GDGCHC 2 cut(s) 403, 823
Bsp143I GATC 2 cut(s) 150, 880
Bsp19I CCATGG 1 cut(s) 785
BspACI CCGC 3 cut(s) 479, 702, 724
BspANI GGCC 3 cut(s) 455, 519, 764
BspCNI CTCAG 1 cut(s) 613
BspDI ATCGAT 1 cut(s) 879
BspFNI CGCG 1 cut(s) 914
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 5 cut(s) 113, 265, 309, 492, 820
BspPI GGATC 1 cut(s) 145
BspQI GCTCTTC 1 cut(s) 660
BspT107I GGYRCC 1 cut(s) 818
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 3 cut(s) 635, 705, 896
BssECI CCNNGG 5 cut(s) 52, 394, 504, 540, 785
BssMI GATC 2 cut(s) 150, 880
BssT1I CCWWGG 4 cut(s) 52, 394, 504, 785
Bst2UI CCWGG 1 cut(s) 466
Bst4CI ACNGT 4 cut(s) 280, 339, 359, 673
Bst6I CTCTTC 3 cut(s) 15, 660, 813
BstC8I GCNNGC 1 cut(s) 479
BstDEI CTNAG 3 cut(s) 58, 600, 951
BstDSI CCRYGG 2 cut(s) 540, 785
BstF5I GGATG 1 cut(s) 31
BstFNI CGCG 1 cut(s) 914
BstKTI GATC 2 cut(s) 153, 883
BstMBI GATC 2 cut(s) 150, 880
BstMCI CGRYCG 1 cut(s) 883
BstMWI GCNNNNNNNGC 3 cut(s) 710, 842, 903
BstNI CCWGG 1 cut(s) 466
BstSCI CCNGG 1 cut(s) 464
BstSLI GKGCMC 1 cut(s) 823
BstUI CGCG 1 cut(s) 914
BstV1I GCAGC 3 cut(s) 17, 872, 893
Bsu15I ATCGAT 1 cut(s) 879
BsuRI GGCC 3 cut(s) 455, 519, 764
BsuTUI ATCGAT 1 cut(s) 879
BtgI CCRYGG 2 cut(s) 540, 785
BtgZI GCGATG 1 cut(s) 895
BtsCI GGATG 1 cut(s) 31
BtsIMutI CAGTG 2 cut(s) 678, 712
Cac8I GCNNGC 1 cut(s) 479
CciI TCATGA 1 cut(s) 328
Cfr13I GGNCC 4 cut(s) 43, 307, 453, 762
ClaI ATCGAT 1 cut(s) 879
CseI GACGC 1 cut(s) 903
Csp6I GTAC 3 cut(s) 64, 604, 797
CviAII CATG 9 cut(s) 304, 329, 362, 382, 574, 620, 786, 842, 945
CviQI GTAC 3 cut(s) 64, 604, 797
DdeI CTNAG 3 cut(s) 58, 600, 951
DpnI GATC 2 cut(s) 152, 882
DpnII GATC 2 cut(s) 150, 880
Eam1104I CTCTTC 3 cut(s) 15, 660, 813
EarI CTCTTC 3 cut(s) 15, 660, 813
Eco130I CCWWGG 4 cut(s) 52, 394, 504, 785
Eco47I GGWCC 2 cut(s) 43, 307
Eco57I CTGAAG 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 464
EcoT14I CCWWGG 4 cut(s) 52, 394, 504, 785
ErhI CCWWGG 4 cut(s) 52, 394, 504, 785
FaeI CATG 9 cut(s) 307, 332, 365, 385, 577, 623, 789, 845, 948
FaqI GGGAC 1 cut(s) 293
FatI CATG 9 cut(s) 303, 328, 361, 381, 573, 619, 785, 841, 944
FauI CCCGC 1 cut(s) 486
FauNDI CATATG 1 cut(s) 685
Fnu4HI GCNGC 3 cut(s) 6, 861, 907
FokI GGATG 1 cut(s) 18
Fsp4HI GCNGC 3 cut(s) 6, 861, 907
FspBI CTAG 2 cut(s) 134, 918
GluI GCNGC 3 cut(s) 6, 861, 907
GsuI CTGGAG 2 cut(s) 913, 922
HaeIII GGCC 3 cut(s) 455, 519, 764
HapII CCGG 1 cut(s) 494
HgaI GACGC 1 cut(s) 903
Hin1II CATG 9 cut(s) 307, 332, 365, 385, 577, 623, 789, 845, 948
HincII GTYRAC 1 cut(s) 889
HindII GTYRAC 1 cut(s) 889
HinfI GANTC 6 cut(s) 74, 214, 234, 332, 369, 885
HpaII CCGG 1 cut(s) 494
HphI GGTGA 2 cut(s) 194, 203
Hpy166II GTNNAC 1 cut(s) 889
Hpy188I TCNGA 1 cut(s) 405
Hpy188III TCNNGA 3 cut(s) 310, 329, 697
Hpy8I GTNNAC 1 cut(s) 889
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 4 cut(s) 280, 339, 359, 673
HpyCH4V TGCA 6 cut(s) 69, 211, 623, 689, 713, 909
HpyF10VI GCNNNNNNNGC 3 cut(s) 710, 842, 903
HpyF3I CTNAG 3 cut(s) 58, 600, 951
Hsp92II CATG 9 cut(s) 307, 332, 365, 385, 577, 623, 789, 845, 948
Kzo9I GATC 2 cut(s) 150, 880
LguI GCTCTTC 1 cut(s) 660
LmnI GCTCC 3 cut(s) 13, 787, 894
Lsp1109I GCAGC 3 cut(s) 17, 872, 893
LweI GCATC 2 cut(s) 823, 918
MaeI CTAG 2 cut(s) 134, 918
MaeIII GTNAC 1 cut(s) 191
MalI GATC 2 cut(s) 152, 882
MboI GATC 2 cut(s) 150, 880
MboII GAAGA 6 cut(s) 32, 358, 463, 647, 768, 800
MfeI CAATTG 2 cut(s) 99, 745
MhlI GDGCHC 2 cut(s) 403, 823
MluCI AATT 7 cut(s) 99, 282, 324, 426, 447, 561, 745
MlyI GAGTC 3 cut(s) 68, 208, 894
MmeI TCCRAC 1 cut(s) 526
MnlI CCTC 8 cut(s) 94, 281, 346, 524, 704, 779, 816, 946
MslI CAYNNNNRTG 1 cut(s) 572
MspA1I CMGCKG 1 cut(s) 863
MspI CCGG 1 cut(s) 494
MspR9I CCNGG 1 cut(s) 466
MunI CAATTG 2 cut(s) 99, 745
Mva1269I GAATGC 1 cut(s) 567
MvaI CCWGG 1 cut(s) 466
MvnI CGCG 1 cut(s) 914
MwoI GCNNNNNNNGC 3 cut(s) 710, 842, 903
NcoI CCATGG 1 cut(s) 785
NdeI CATATG 1 cut(s) 685
NdeII GATC 2 cut(s) 150, 880
NlaIII CATG 9 cut(s) 307, 332, 365, 385, 577, 623, 789, 845, 948
NlaIV GGNNCC 5 cut(s) 113, 265, 309, 492, 820
NmuCI GTSAC 1 cut(s) 191
PagI TCATGA 1 cut(s) 328
PciSI GCTCTTC 1 cut(s) 660
PctI GAATGC 1 cut(s) 567
PfeI GAWTC 3 cut(s) 234, 332, 369
PkrI GCNGC 3 cut(s) 7, 862, 908
Ple19I CGATCG 1 cut(s) 883
PleI GAGTC 3 cut(s) 68, 208, 893
PpsI GAGTC 3 cut(s) 68, 208, 893
Psp6I CCWGG 1 cut(s) 464
PspGI CCWGG 1 cut(s) 464
PspN4I GGNNCC 5 cut(s) 113, 265, 309, 492, 820
PspPI GGNCC 4 cut(s) 43, 307, 453, 762
PvuI CGATCG 1 cut(s) 883
PvuII CAGCTG 1 cut(s) 863
RsaI GTAC 3 cut(s) 65, 605, 798
RsaNI GTAC 3 cut(s) 64, 604, 797
RseI CAYNNNNRTG 1 cut(s) 572
SapI GCTCTTC 1 cut(s) 660
SatI GCNGC 3 cut(s) 6, 861, 907
Sau3AI GATC 2 cut(s) 150, 880
Sau96I GGNCC 4 cut(s) 43, 307, 453, 762
ScaI AGTACT 1 cut(s) 65
SchI GAGTC 3 cut(s) 68, 208, 894
ScrFI CCNGG 1 cut(s) 466
SduI GDGCHC 2 cut(s) 403, 823
SfaNI GCATC 2 cut(s) 823, 918
SinI GGWCC 2 cut(s) 43, 307
SmiMI CAYNNNNRTG 1 cut(s) 572
Sse9I AATT 7 cut(s) 99, 282, 324, 426, 447, 561, 745
SsiI CCGC 3 cut(s) 479, 702, 724
SspMI CTAG 2 cut(s) 134, 918
StyD4I CCNGG 1 cut(s) 464
StyI CCWWGG 4 cut(s) 52, 394, 504, 785
TaaI ACNGT 4 cut(s) 280, 339, 359, 673
TaqI TCGA 2 cut(s) 879, 883
TasI AATT 7 cut(s) 99, 282, 324, 426, 447, 561, 745
TatI WGTACW 1 cut(s) 63
TfiI GAWTC 3 cut(s) 234, 332, 369
TscAI CASTG 2 cut(s) 678, 712
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 3 cut(s) 5, 860, 906
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 4 cut(s) 292, 317, 359, 398
TspRI CASTG 2 cut(s) 678, 712
VpaK11BI GGWCC 2 cut(s) 43, 307
XapI RAATTY 1 cut(s) 447
XspI CTAG 2 cut(s) 134, 918
ZrmI AGTACT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.