pycom06g02580

The H protein shuttles the methylamine group of glycine from the P protein to the T protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0012278
Physical Location & Seq
Reverse (-)
3115980 .. 3117224
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g02580.3

Sequence Viewer

Length: 453 bp
ATGGCACTGAGACTGTGGGCGTCTTCAACAGCCAATGCACTTAGAATCTCCACTGCCTCCAAATCCCACCTCTCTCCTGCATTTTCTCTCTCTAGATGCTTTTCTACTGTTTTGGATGGATTGAAGTATGCATCTTCACATGAGTGGGTGAAGCATGAAGGCTCTGTGGCAACAATTGGCATAACTGATCATGCTCAGGACCATCTTGGAGAAGTAGTGTTTGTTGAGCTACCAGAAGCTGGTCGCTCAGTCTCTCAAGGAGGCAGCTTTGGAGCTGTGGAAAGTGTCAAGGCAACCAGTGATGTCAATTCCCCAATCTCCGGCGAAGTCGTCGAGGTTAACTCAAAGCTTACTGAATCACCTGGTTTGATCAATTCGAGCCCATATGAAGGTGGATGGATGATCGATCAAGCCCAGCAGTCCATCAGAACTAGAATCCTTGTTGGGACCTAA

Protein Analysis

151

Amino Acids

15.89

Weight (kDa)

5.67

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32470 AT2G35370
fragaria_vesca FvH4_5g21610 FvH4_5g21610
malus_domestica MD06G1031000.v1.1 MD16G1277700.v1.1
prunus_persica Prupe.5G041300_v2.0.a1
pyrus_communis pycom06g02580 pycom16g24690
rosa_chinensis RchiOBHm_Chr7g0209071
rosa_laevigata RLG00000003170
rosa_multiflora Rmu_co8473347.1_g000001
rosa_roxburghii Rroxscaffold_3G00249780
rosa_rugosa Rorug07G0108700
rosa_samantha Rh7AG243200 Rh7BG238200 Rh7CG258400 Rh7DG250200
rosa_wichuraiana Rw7G020610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 239
AcyI GRCGYC 1 cut(s) 20
AfiI CCNNNNNNNGG 3 cut(s) 239, 320, 389
AgsI TTSAA 2 cut(s) 27, 124
AjnI CCWGG 1 cut(s) 361
AleI CACNNNNGTG 1 cut(s) 142
AluBI AGCT 5 cut(s) 229, 239, 267, 275, 349
AluI AGCT 5 cut(s) 229, 239, 267, 275, 349
Alw26I GTCTC 2 cut(s) 4, 256
AlwNI CAGNNNCTG 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 264
AspS9I GGNCC 2 cut(s) 199, 447
AsuHPI GGTGA 2 cut(s) 160, 351
AvaII GGWCC 2 cut(s) 199, 447
BanII GRGCYC 1 cut(s) 383
BbsI GAAGAC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 276
BccI CCATC 4 cut(s) 110, 210, 390, 431
BciT130I CCWGG 1 cut(s) 363
BclI TGATCA 2 cut(s) 187, 369
BcoDI GTCTC 2 cut(s) 4, 256
BfaI CTAG 2 cut(s) 93, 432
BisI GCNGC 1 cut(s) 265
BlsI GCNGC 1 cut(s) 266
Bme1390I CCNGG 1 cut(s) 363
Bme18I GGWCC 2 cut(s) 199, 447
BmgT120I GGNCC 2 cut(s) 199, 447
BmiI GGNNCC 1 cut(s) 448
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 2 cut(s) 86, 140
BpiI GAAGAC 1 cut(s) 15
BplI GAGNNNNNCTC 2 cut(s) 326, 358
Bpu10I CCTNAGC 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 240
Bsa29I ATCGAT 1 cut(s) 405
BsaHI GRCGYC 1 cut(s) 20
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 320, 389
Bse1I ACTGG 1 cut(s) 297
BseBI CCWGG 1 cut(s) 363
BseCI ATCGAT 1 cut(s) 405
BseGI GGATG 3 cut(s) 121, 401, 405
BseLI CCNNNNNNNGG 3 cut(s) 239, 320, 389
BseMII CTCAG 2 cut(s) 209, 261
BseNI ACTGG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 276
BseYI CCCAGC 1 cut(s) 414
BshVI ATCGAT 1 cut(s) 405
BsiSI CCGG 1 cut(s) 321
BslI CCNNNNNNNGG 3 cut(s) 239, 320, 389
BsmAI GTCTC 2 cut(s) 4, 256
Bsp1286I GDGCHC 1 cut(s) 383
Bsp143I GATC 4 cut(s) 187, 369, 402, 406
BspCNI CTCAG 2 cut(s) 208, 260
BspDI ATCGAT 1 cut(s) 405
BspLI GGNNCC 1 cut(s) 448
BsrI ACTGG 1 cut(s) 297
BssMI GATC 4 cut(s) 187, 369, 402, 406
BssNI GRCGYC 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 2 cut(s) 15, 109
BstACI GRCGYC 1 cut(s) 20
BstDEI CTNAG 4 cut(s) 8, 41, 195, 247
BstF5I GGATG 3 cut(s) 121, 401, 405
BstKTI GATC 4 cut(s) 190, 372, 405, 409
BstMAI GTCTC 2 cut(s) 4, 256
BstMBI GATC 4 cut(s) 187, 369, 402, 406
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 361
BstV1I GCAGC 1 cut(s) 276
BstV2I GAAGAC 1 cut(s) 15
Bsu15I ATCGAT 1 cut(s) 405
BsuTUI ATCGAT 1 cut(s) 405
BtsCI GGATG 3 cut(s) 121, 401, 405
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 3 cut(s) 5, 51, 304
CaiI CAGNNNCTG 1 cut(s) 239
Cfr13I GGNCC 2 cut(s) 199, 447
ClaI ATCGAT 1 cut(s) 405
CseI GACGC 1 cut(s) 9
CsiI ACCWGGT 1 cut(s) 361
CviAII CATG 3 cut(s) 140, 155, 191
CviJI RGCY 9 cut(s) 32, 162, 229, 239, 267, 275, 349, 381, 413
CviKI_1 RGCY 9 cut(s) 32, 162, 229, 239, 267, 275, 349, 381, 413
DdeI CTNAG 4 cut(s) 8, 41, 195, 247
DpnI GATC 4 cut(s) 189, 371, 404, 408
DpnII GATC 4 cut(s) 187, 369, 402, 406
Eco24I GRGCYC 1 cut(s) 383
Eco47I GGWCC 2 cut(s) 199, 447
EcoO109I RGGNCCY 1 cut(s) 447
EcoRII CCWGG 1 cut(s) 361
EcoT22I ATGCAT 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 383
FaeI CATG 3 cut(s) 143, 158, 194
FaiI YATR 7 cut(s) 129, 141, 156, 182, 192, 385, 387
FatI CATG 3 cut(s) 139, 154, 190
FauNDI CATATG 1 cut(s) 385
FbaI TGATCA 2 cut(s) 187, 369
Fnu4HI GCNGC 1 cut(s) 265
FokI GGATG 3 cut(s) 128, 408, 412
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 1 cut(s) 265
FspBI CTAG 2 cut(s) 93, 432
GluI GCNGC 1 cut(s) 265
GsaI CCCAGC 1 cut(s) 418
HapII CCGG 1 cut(s) 321
HgaI GACGC 1 cut(s) 9
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 3 cut(s) 143, 158, 194
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 3 cut(s) 45, 356, 435
HpaI GTTAAC 1 cut(s) 340
HpaII CCGG 1 cut(s) 321
HphI GGTGA 2 cut(s) 160, 351
Hpy166II GTNNAC 1 cut(s) 340
Hpy188I TCNGA 1 cut(s) 428
Hpy188III TCNNGA 2 cut(s) 93, 197
Hpy8I GTNNAC 1 cut(s) 340
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 2 cut(s) 152, 383
HpyCH4III ACNGT 2 cut(s) 15, 109
HpyCH4V TGCA 3 cut(s) 38, 80, 131
HpyF3I CTNAG 4 cut(s) 8, 41, 195, 247
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 3 cut(s) 143, 158, 194
Ksp22I TGATCA 2 cut(s) 187, 369
KspAI GTTAAC 1 cut(s) 340
Kzo9I GATC 4 cut(s) 187, 369, 402, 406
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 9 cut(s) 90, 182, 225, 246, 310, 334, 348, 375, 428
Lsp1109I GCAGC 1 cut(s) 276
LweI GCATC 2 cut(s) 86, 140
MabI ACCWGGT 1 cut(s) 361
MaeI CTAG 2 cut(s) 93, 432
MalI GATC 4 cut(s) 189, 371, 404, 408
MboI GATC 4 cut(s) 187, 369, 402, 406
MboII GAAGA 2 cut(s) 15, 126
MfeI CAATTG 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 383
MluCI AATT 3 cut(s) 174, 307, 373
MnlI CCTC 4 cut(s) 67, 80, 254, 328
Mph1103I ATGCAT 1 cut(s) 133
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 142
MspI CCGG 1 cut(s) 321
MspR9I CCNGG 1 cut(s) 363
MunI CAATTG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 363
NdeI CATATG 1 cut(s) 385
NdeII GATC 4 cut(s) 187, 369, 402, 406
NlaIII CATG 3 cut(s) 143, 158, 194
NlaIV GGNNCC 1 cut(s) 448
NsiI ATGCAT 1 cut(s) 133
OliI CACNNNNGTG 1 cut(s) 142
PfeI GAWTC 3 cut(s) 45, 356, 435
PflMI CCANNNNNTGG 1 cut(s) 239
PkrI GCNGC 1 cut(s) 266
PpuMI RGGWCCY 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 361
PspFI CCCAGC 1 cut(s) 414
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 1 cut(s) 448
PspPI GGNCC 2 cut(s) 199, 447
PspPPI RGGWCCY 1 cut(s) 447
PstNI CAGNNNCTG 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 142
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 1 cut(s) 265
Sau3AI GATC 4 cut(s) 187, 369, 402, 406
Sau96I GGNCC 2 cut(s) 199, 447
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 1 cut(s) 383
SexAI ACCWGGT 1 cut(s) 361
SfaNI GCATC 2 cut(s) 86, 140
SinI GGWCC 2 cut(s) 199, 447
SmiMI CAYNNNNRTG 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
Sse9I AATT 3 cut(s) 174, 307, 373
SspMI CTAG 2 cut(s) 93, 432
StyD4I CCNGG 1 cut(s) 361
TaaI ACNGT 2 cut(s) 15, 109
TaqI TCGA 3 cut(s) 333, 377, 405
TasI AATT 3 cut(s) 174, 307, 373
TfiI GAWTC 3 cut(s) 45, 356, 435
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 3 cut(s) 12, 58, 304
TseI GCWGC 1 cut(s) 264
TspDTI ATGAA 2 cut(s) 171, 402
TspRI CASTG 3 cut(s) 12, 58, 304
Van91I CCANNNNNTGG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 199, 447
XbaI TCTAGA 1 cut(s) 92
XspI CTAG 2 cut(s) 93, 432
Zsp2I ATGCAT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.