Rmu_co8473347.1_g000001

The H protein shuttles the methylamine group of glycine from the P protein to the T protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8473347.1
OG0012278
Physical Location & Seq
Forward (+)
686 .. 1948
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8473347.1_g000001.1.cds

Sequence Viewer

Length: 486 bp
atgtgggcttcttctacagcaaatgcactcagaatctctggtgcctccaaagctcaactctcccctgcattctctctctccagatgcttttccactgttctggatgggttgaagtatgcatcttcacatgaatgggtgaagcatgaaggctcagttgctacaattggtatcactgaccatgctcaggaccatcttggtgaagtggtgtttgtggagctgccagaacccggtacagcagtctcccaaagcagcagcttcggaaatgttgaaagtgtgaaagcaaccagtgatgtgaattccccaatctctggtgaggttgttgaggttaacccgaagctgagtgaaacacctggtttgatcaatacaagcccatatgaagatggatggatgatcaaggtgaagcccagcaatgcatcagaactagaatccttgttgggtcctaaagaatacacgaaattctgcgaggaagaagatgcagcccactag

Protein Analysis

161

Amino Acids

17.17

Weight (kDa)

4.76

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32470 AT2G35370
fragaria_vesca FvH4_5g21610 FvH4_5g21610
malus_domestica MD06G1031000.v1.1 MD16G1277700.v1.1
prunus_persica Prupe.5G041300_v2.0.a1
pyrus_communis pycom06g02580 pycom16g24690
rosa_chinensis RchiOBHm_Chr7g0209071
rosa_laevigata RLG00000003170
rosa_multiflora Rmu_co8473347.1_g000001
rosa_roxburghii Rroxscaffold_3G00249780
rosa_rugosa Rorug07G0108700
rosa_samantha Rh7AG243200 Rh7BG238200 Rh7CG258400 Rh7DG250200
rosa_wichuraiana Rw7G020610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AccB7I CCANNNNNTGG 1 cut(s) 308
AcsI RAATTY 2 cut(s) 295, 455
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 3 cut(s) 184, 227, 308
AgsI TTSAA 2 cut(s) 112, 269
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 4 cut(s) 53, 217, 255, 337
AluI AGCT 4 cut(s) 53, 217, 255, 337
Alw26I GTCTC 1 cut(s) 244
ApeKI GCWGC 4 cut(s) 217, 249, 252, 476
ApoI RAATTY 2 cut(s) 295, 455
AspS9I GGNCC 2 cut(s) 187, 437
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 4 cut(s) 148, 209, 323, 409
AvaII GGWCC 2 cut(s) 187, 437
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BanI GGYRCC 1 cut(s) 41
BbvI GCAGC 3 cut(s) 204, 261, 264
BccI CCATC 4 cut(s) 98, 198, 374, 378
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BciT130I CCWGG 1 cut(s) 351
BclI TGATCA 2 cut(s) 357, 390
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 2 cut(s) 422, 484
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 4 cut(s) 218, 250, 253, 477
BlsI GCNGC 4 cut(s) 219, 251, 254, 478
Bme1390I CCNGG 2 cut(s) 228, 351
Bme18I GGWCC 2 cut(s) 187, 437
BmgT120I GGNCC 2 cut(s) 187, 437
BmiI GGNNCC 2 cut(s) 43, 438
BmrFI CCNGG 2 cut(s) 228, 351
BmsI GCATC 4 cut(s) 74, 128, 422, 463
BpmI CTGGAG 1 cut(s) 64
Bpu10I CCTNAGC 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 228
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 227, 308
Bse1I ACTGG 1 cut(s) 285
Bse3DI GCAATG 1 cut(s) 415
BseBI CCWGG 1 cut(s) 351
BseGI GGATG 3 cut(s) 109, 389, 393
BseLI CCNNNNNNNGG 3 cut(s) 184, 227, 308
BseMI GCAATG 1 cut(s) 415
BseMII CTCAG 4 cut(s) 43, 165, 197, 329
BseNI ACTGG 1 cut(s) 285
BseXI GCAGC 3 cut(s) 204, 261, 264
BseYI CCCAGC 1 cut(s) 404
BshNI GGYRCC 1 cut(s) 41
BsiSI CCGG 1 cut(s) 228
BslI CCNNNNNNNGG 3 cut(s) 184, 227, 308
BsmAI GTCTC 1 cut(s) 244
BsmI GAATGC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 357, 390
BspCNI CTCAG 4 cut(s) 42, 164, 196, 330
BspLI GGNNCC 2 cut(s) 43, 438
BspT107I GGYRCC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 415
BsrI ACTGG 1 cut(s) 285
BssMI GATC 2 cut(s) 357, 390
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 97
BstDEI CTNAG 4 cut(s) 29, 151, 183, 338
BstF5I GGATG 3 cut(s) 109, 389, 393
BstKTI GATC 2 cut(s) 360, 393
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 2 cut(s) 357, 390
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 2 cut(s) 226, 349
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 3 cut(s) 204, 261, 264
BstXI CCANNNNNNTGG 1 cut(s) 100
BtsCI GGATG 3 cut(s) 109, 389, 393
BtsIMutI CAGTG 3 cut(s) 93, 171, 292
Cfr13I GGNCC 2 cut(s) 187, 437
CsiI ACCWGGT 1 cut(s) 349
Csp6I GTAC 1 cut(s) 231
CviAII CATG 3 cut(s) 128, 143, 179
CviJI RGCY 9 cut(s) 8, 53, 150, 217, 255, 337, 369, 403, 479
CviKI_1 RGCY 9 cut(s) 8, 53, 150, 217, 255, 337, 369, 403, 479
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 4 cut(s) 29, 151, 183, 338
DpnI GATC 2 cut(s) 359, 392
DpnII GATC 2 cut(s) 357, 390
Eco47I GGWCC 2 cut(s) 187, 437
EcoO109I RGGNCCY 1 cut(s) 437
EcoRI GAATTC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 349
EcoT22I ATGCAT 2 cut(s) 121, 415
FaeI CATG 3 cut(s) 131, 146, 182
FaiI YATR 6 cut(s) 117, 129, 144, 180, 373, 375
FatI CATG 3 cut(s) 127, 142, 178
FauNDI CATATG 1 cut(s) 373
FbaI TGATCA 2 cut(s) 357, 390
Fnu4HI GCNGC 4 cut(s) 218, 250, 253, 477
FokI GGATG 3 cut(s) 116, 396, 400
Fsp4HI GCNGC 4 cut(s) 218, 250, 253, 477
FspBI CTAG 2 cut(s) 422, 484
GluI GCNGC 4 cut(s) 218, 250, 253, 477
GsaI CCCAGC 1 cut(s) 408
GsuI CTGGAG 1 cut(s) 64
HapII CCGG 1 cut(s) 228
Hin1II CATG 3 cut(s) 131, 146, 182
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 2 cut(s) 33, 425
HpaI GTTAAC 1 cut(s) 328
HpaII CCGG 1 cut(s) 228
HphI GGTGA 4 cut(s) 148, 209, 323, 409
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 3 cut(s) 32, 260, 418
Hpy188III TCNNGA 3 cut(s) 81, 101, 185
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 5 cut(s) 26, 68, 119, 413, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 4 cut(s) 29, 151, 183, 338
Hsp92II CATG 3 cut(s) 131, 146, 182
Ksp22I TGATCA 2 cut(s) 357, 390
KspAI GTTAAC 1 cut(s) 328
Kzo9I GATC 2 cut(s) 357, 390
LmnI GCTCC 1 cut(s) 214
Lsp1109I GCAGC 3 cut(s) 204, 261, 264
LweI GCATC 4 cut(s) 74, 128, 422, 463
MabI ACCWGGT 1 cut(s) 349
MaeI CTAG 2 cut(s) 422, 484
MalI GATC 2 cut(s) 359, 392
MboI GATC 2 cut(s) 357, 390
MboII GAAGA 5 cut(s) 3, 114, 389, 479, 482
MfeI CAATTG 1 cut(s) 162
MluCI AATT 3 cut(s) 162, 295, 455
MnlI CCTC 4 cut(s) 55, 307, 316, 457
Mph1103I ATGCAT 2 cut(s) 121, 415
MseI TTAA 1 cut(s) 327
MslI CAYNNNNRTG 2 cut(s) 130, 195
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 2 cut(s) 228, 351
MunI CAATTG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 68
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 1 cut(s) 50
NciI CCSGG 1 cut(s) 228
NdeI CATATG 1 cut(s) 373
NdeII GATC 2 cut(s) 357, 390
NlaIII CATG 3 cut(s) 131, 146, 182
NlaIV GGNNCC 2 cut(s) 43, 438
NsiI ATGCAT 2 cut(s) 121, 415
PctI GAATGC 1 cut(s) 68
PfeI GAWTC 2 cut(s) 33, 425
PflMI CCANNNNNTGG 1 cut(s) 308
PkrI GCNGC 4 cut(s) 219, 251, 254, 478
PpuMI RGGWCCY 1 cut(s) 437
Psp5II RGGWCCY 1 cut(s) 437
Psp6I CCWGG 1 cut(s) 349
PspFI CCCAGC 1 cut(s) 404
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 2 cut(s) 43, 438
PspPI GGNCC 2 cut(s) 187, 437
PspPPI RGGWCCY 1 cut(s) 437
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
RseI CAYNNNNRTG 2 cut(s) 130, 195
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 4 cut(s) 218, 250, 253, 477
Sau3AI GATC 2 cut(s) 357, 390
Sau96I GGNCC 2 cut(s) 187, 437
ScrFI CCNGG 2 cut(s) 228, 351
SetI ASST 8 cut(s) 55, 219, 257, 318, 327, 339, 352, 399
SexAI ACCWGGT 1 cut(s) 349
SfaNI GCATC 4 cut(s) 74, 128, 422, 463
SfcI CTRYAG 1 cut(s) 15
SinI GGWCC 2 cut(s) 187, 437
SmiMI CAYNNNNRTG 2 cut(s) 130, 195
Sse9I AATT 3 cut(s) 162, 295, 455
SspMI CTAG 2 cut(s) 422, 484
StyD4I CCNGG 2 cut(s) 226, 349
TaaI ACNGT 1 cut(s) 97
TasI AATT 3 cut(s) 162, 295, 455
TfiI GAWTC 2 cut(s) 33, 425
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 3 cut(s) 100, 178, 292
TseI GCWGC 4 cut(s) 217, 249, 252, 476
TspDTI ATGAA 3 cut(s) 144, 159, 390
TspRI CASTG 3 cut(s) 100, 178, 292
Van91I CCANNNNNTGG 1 cut(s) 308
VpaK11BI GGWCC 2 cut(s) 187, 437
XapI RAATTY 2 cut(s) 295, 455
XspI CTAG 2 cut(s) 422, 484
Zsp2I ATGCAT 2 cut(s) 121, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.