Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0013681

Physical Location & Seq

Genomic Coordinates Reverse (-)

5018545 .. 5019810

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGAACATGGAGCAAAGAGAAAGGGGTGCTGGTGAGCGTGTACGTAGAGAAGCCGAAGAGGCACCACCACCACAACCACCATCATATTCATCACGCCGTCAAACGAGAGATAATTCATTACAGGCAGGGTGCCGGCGGAAAAGGGTACATAATTAGCAGGAGAGCAGAGCTGCTTCAGTACTCCCAATACCTTCGTCAATCTGCTCGATCAGCACCGCCATCCACACCCTCGTCAAGGCCAAACATTACCAGTAGTCAACAGCCTCATACCCACCAGGTAGTGGGTGTGCGCAGAAAGCCGAACAAGAGTTCAAAAGCTCCAACCTGCTTTGGCAACTGGAAATTACCGAACGTTTTTGGAATTTTCCAAGCTAAGAAAGGGAGGAAGACAAGGAAGATGCCTTGGGGTAACAGTAGAACCACCACCAGTAAAATAAAAGCTGCTGTAAAAAGCCTAAAGGTGCAAAAGCAGCGGAGCCTTTTTTCCAAAGTTTTCTCAGCACCAACAAAGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

19.62

Weight (kDa)

11.64

Isoelectric Point (pI)

60.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20360
prunus_persica	Prupe.5G055600_v2.0.a1
pyrus_communis	pycom06g03980
rosa_chinensis	RchiOBHm_Chr7g0205621
rosa_laevigata	RLG00000003370 RLG00000003371
rosa_multiflora	Rmu_ssc0000482.1_g000024
rosa_roxburghii	Rroxscaffold_3G00252140 Rroxscaffold_3G00252150
rosa_rugosa	Rorug07G0092100 Rorug07G0092200
rosa_samantha	Rh7AG223000 Rh7BG218000 Rh7CG235000 Rh7CG235900 Rh7CG236200 Rh7DG229900
rosa_wichuraiana	Rw7G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	335
AccB1I	GGYRCC	2 cut(s)	63, 131
AccB7I	CCANNNNNTGG	1 cut(s)	283
AciI	CCGC	3 cut(s)	138, 218, 475
AclI	AACGTT	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	3 cut(s)	44, 149, 182
AfiI	CCNNNNNNNGG	2 cut(s)	237, 283
AgsI	TTSAA	1 cut(s)	315
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	4 cut(s)	172, 320, 374, 443
AluI	AGCT	4 cut(s)	172, 320, 374, 443
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	3 cut(s)	172, 443, 472
ApoI	RAATTY	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	46
BanI	GGYRCC	2 cut(s)	63, 131
BbsI	GAAGAC	1 cut(s)	395
BbvI	GCAGC	3 cut(s)	159, 430, 484
BccI	CCATC	2 cut(s)	90, 229
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	335
BglI	GCCNNNNNGGC	1 cut(s)	61
BisI	GCNGC	3 cut(s)	173, 444, 473
BlsI	GCNGC	3 cut(s)	174, 445, 474
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	278
BmiI	GGNNCC	3 cut(s)	65, 133, 479
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 283
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	3 cut(s)	252, 344, 429
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	404
BseGI	GGATG	1 cut(s)	221
BseLI	CCNNNNNNNGG	2 cut(s)	237, 283
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	3 cut(s)	252, 344, 429
BseXI	GCAGC	3 cut(s)	159, 430, 484
BshFI	GGCC	1 cut(s)	241
BshNI	GGYRCC	2 cut(s)	63, 131
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	237, 283
BsnI	GGCC	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	209
BspACI	CCGC	3 cut(s)	138, 218, 475
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	1 cut(s)	512
BspLI	GGNNCC	3 cut(s)	65, 133, 479
BspMI	ACCTGC	1 cut(s)	335
BspT107I	GGYRCC	2 cut(s)	63, 131
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	3 cut(s)	252, 344, 429
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	404
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	416
Bst6I	CTCTTC	1 cut(s)	53
BstBAI	YACGTR	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	2 cut(s)	375, 499
BstENI	CCTNNNNNAGG	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 212, 298, 472
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstSNI	TACGTA	1 cut(s)	46
BstV1I	GCAGC	3 cut(s)	159, 430, 484
BstV2I	GAAGAC	1 cut(s)	395
BsuRI	GGCC	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	221
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	1 cut(s)	136
CfoI	GCGC	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	134
CsiI	ACCWGGT	1 cut(s)	276
Csp6I	GTAC	3 cut(s)	43, 148, 181
CviAII	CATG	1 cut(s)	9
CviQI	GTAC	3 cut(s)	43, 148, 181
DdeI	CTNAG	2 cut(s)	375, 499
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EciI	GGCGGA	1 cut(s)	153
Eco105I	TACGTA	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	161
EcoNI	CCTNNNNNAGG	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	404
FaeI	CATG	1 cut(s)	12
FaiI	YATR	4 cut(s)	10, 87, 152, 270
FatI	CATG	1 cut(s)	8
Fnu4HI	GCNGC	3 cut(s)	173, 444, 473
FokI	GGATG	1 cut(s)	208
Fsp4HI	GCNGC	3 cut(s)	173, 444, 473
FspI	TGCGCA	1 cut(s)	293
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	3 cut(s)	173, 444, 473
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	1 cut(s)	135
HhaI	GCGC	1 cut(s)	294
Hin1II	CATG	1 cut(s)	12
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HincII	GTYRAC	1 cut(s)	260
HindII	GTYRAC	1 cut(s)	260
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	43, 260
Hpy8I	GTNNAC	2 cut(s)	43, 260
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4IV	ACGT	2 cut(s)	45, 354
HpyCH4V	TGCA	1 cut(s)	466
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 212, 298, 472
HpyF3I	CTNAG	2 cut(s)	375, 499
HpySE526I	ACGT	2 cut(s)	45, 354
Hsp92II	CATG	1 cut(s)	12
HspAI	GCGC	1 cut(s)	292
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	209
LmnI	GCTCC	3 cut(s)	12, 325, 477
Lsp1109I	GCAGC	3 cut(s)	159, 430, 484
LweI	GCATC	1 cut(s)	390
MabI	ACCWGGT	1 cut(s)	276
MaeII	ACGT	2 cut(s)	45, 354
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MboII	GAAGA	3 cut(s)	70, 400, 409
MluCI	AATT	4 cut(s)	114, 153, 344, 363
MmeI	TCCRAC	1 cut(s)	347
MnlI	CCTC	4 cut(s)	54, 241, 276, 378
MroNI	GCCGGC	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	475
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	4 cut(s)	61, 212, 298, 472
NaeI	GCCGGC	1 cut(s)	136
NdeII	GATC	1 cut(s)	209
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	1 cut(s)	12
NlaIV	GGNNCC	3 cut(s)	65, 133, 479
NsbI	TGCGCA	1 cut(s)	293
PdiI	GCCGGC	1 cut(s)	136
PflMI	CCANNNNNTGG	1 cut(s)	283
PkrI	GCNGC	3 cut(s)	174, 445, 474
Ppu21I	YACGTR	1 cut(s)	46
Psp1406I	AACGTT	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	3 cut(s)	65, 133, 479
RsaI	GTAC	3 cut(s)	44, 149, 182
RsaNI	GTAC	3 cut(s)	43, 148, 181
SatI	GCNGC	3 cut(s)	173, 444, 473
Sau3AI	GATC	1 cut(s)	209
ScaI	AGTACT	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	278
SexAI	ACCWGGT	1 cut(s)	276
SfaNI	GCATC	1 cut(s)	390
SnaBI	TACGTA	1 cut(s)	46
Sse9I	AATT	4 cut(s)	114, 153, 344, 363
SsiI	CCGC	3 cut(s)	138, 218, 475
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	404
TaaI	ACNGT	1 cut(s)	416
TaiI	ACGT	2 cut(s)	48, 357
TaqI	TCGA	1 cut(s)	208
TasI	AATT	4 cut(s)	114, 153, 344, 363
TatI	WGTACW	1 cut(s)	180
TseI	GCWGC	3 cut(s)	172, 443, 472
TspDTI	ATGAA	2 cut(s)	80, 107
Van91I	CCANNNNNTGG	1 cut(s)	283
XagI	CCTNNNNNAGG	1 cut(s)	235
XapI	RAATTY	1 cut(s)	363
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.