Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007896

Physical Location & Seq

Genomic Coordinates Reverse (-)

5136266 .. 5138069

Gene Structure 1804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGTGATTGGAGGAGTTAATTCTGATTATTCCCATGGTTTCCGAAAGATAATTGAAGAAGATAAAAGTAATAGATCCAGTTCTGGGTCTGCCGTGTCTAACTCTGAGAGCTGCGCACAATTTGGCAGTGGAGATGCTAGTGATTTGACAGGTCCTGCGCAGTCGATGGTATGGGACTCAATGGTACCTTCTAGGAAAAGGACCTGTATAGGCCGTCTTAAGCCATCTCCTGTGGAAAAGCTCACAAAGGATCTGTATACTATTTTACATGAACAACAGTCTTCCTGCTTCTCCGGGTCTTCTGAAGAGGATCTGCTTTTTGAGAGTGAAACGCCAATGGTTTCTGTTGAGATAGGCCATGGAAGTGTTCTGATTAGGCATCCCAACTCAATAGCACGAGAAGAGGAATCTGAAGCTAGCTCAATCTCGGTTGATAATAAACAGTGCCTTGCAAATGAGGTTTATTCCCGTTCTGCAACCCTTTTTGTACATAATAATAAGGGTGTCAATATGGCCAGTACTGTATCTGGAAGGATGAATAACGTTGCAGGACAAGGAATGCAACATGAGCCACTGAAAAGGGATAAGTCTCAACTTGACAACTTTCAAATCTTGGGAAACCATAATTCACCACTGCGTCATGTAGATTTAAATGTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASXH GATA RPN13_C

Protein Analysis

221

Amino Acids

23.98

Weight (kDa)

5.74

Isoelectric Point (pI)

62.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17570 AT4G17570 AT4G17570 AT5G47140
fragaria_vesca	FvH4_5g20240 FvH4_5g20240
malus_domestica	MD04G1052000.v1.1 MD06G1048100.v1.1
prunus_persica	Prupe.5G058300_v2.0.a1 Prupe.5G058300_v2.0.a1 Prupe.5G058300_v2.0.a1
pyrus_communis	pycom04g04570 pycom06g04110
rosa_chinensis	RchiOBHm_Chr7g0205311
rosa_laevigata	RLG00000003389
rosa_multiflora	Rmu_sc0001072.1_g000024 Rmu_ssc0000004.1_g000026
rosa_roxburghii	Rroxscaffold_3G00252480
rosa_rugosa	Rorug07G0089600
rosa_samantha	Rh7AG220300 Rh7BG216400 Rh7CG233100 Rh7DG227200
rosa_wichuraiana	Rw7G019040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	115, 159
Acc65I	GGTACC	1 cut(s)	184
AccB1I	GGYRCC	1 cut(s)	184
AccI	GTMKAC	1 cut(s)	257
AclI	AACGTT	1 cut(s)	543
AclWI	GGATC	3 cut(s)	69, 258, 318
AcoI	YGGCCR	1 cut(s)	513
AcuI	CTGAAG	2 cut(s)	324, 432
AfaI	GTAC	3 cut(s)	186, 489, 520
AfiI	CCNNNNNNNGG	1 cut(s)	84
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	2 cut(s)	56, 608
AluBI	AGCT	4 cut(s)	111, 241, 416, 420
AluI	AGCT	4 cut(s)	111, 241, 416, 420
Alw26I	GTCTC	1 cut(s)	594
AlwI	GGATC	3 cut(s)	69, 258, 318
AlwNI	CAGNNNCTG	1 cut(s)	155
AoxI	GGCC	3 cut(s)	211, 355, 513
ApeKI	GCWGC	1 cut(s)	111
Asp718I	GGTACC	1 cut(s)	184
AspLEI	GCGC	2 cut(s)	116, 160
AspS9I	GGNCC	2 cut(s)	152, 201
AsuC2I	CCSGG	1 cut(s)	295
AsuHPI	GGTGA	2 cut(s)	16, 621
AsuNHI	GCTAGC	1 cut(s)	416
AvaII	GGWCC	2 cut(s)	152, 201
BalI	TGGCCA	1 cut(s)	515
BanI	GGYRCC	1 cut(s)	184
BauI	CACGAG	1 cut(s)	396
BbsI	GAAGAC	2 cut(s)	273, 291
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	2 cut(s)	160, 232
BceAI	ACGGC	2 cut(s)	77, 198
BcnI	CCSGG	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	594
BfaI	CTAG	3 cut(s)	138, 192, 417
BfrI	CTTAAG	1 cut(s)	218
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
BmcAI	AGTACT	1 cut(s)	520
Bme1390I	CCNGG	1 cut(s)	295
Bme18I	GGWCC	2 cut(s)	152, 201
BmgT120I	GGNCC	2 cut(s)	152, 201
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	295
BmsI	GCATC	2 cut(s)	124, 388
BmtI	GCTAGC	1 cut(s)	420
BpiI	GAAGAC	2 cut(s)	273, 291
BpuMI	CCSGG	1 cut(s)	295
BsaJI	CCNNGG	2 cut(s)	34, 358
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse1I	ACTGG	2 cut(s)	78, 516
BseDI	CCNNGG	2 cut(s)	34, 358
BseGI	GGATG	2 cut(s)	379, 540
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	2 cut(s)	78, 516
BseRI	GAGGAG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	98
BshFI	GGCC	3 cut(s)	213, 357, 515
BshNI	GGYRCC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	594
BsmFI	GGGAC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	3 cut(s)	213, 357, 515
Bsp1407I	TGTACA	1 cut(s)	487
Bsp143I	GATC	3 cut(s)	74, 250, 310
Bsp19I	CCATGG	2 cut(s)	34, 358
BspANI	GGCC	3 cut(s)	213, 357, 515
BspCNI	CTCAG	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	186
BspOI	GCTAGC	1 cut(s)	420
BspPI	GGATC	3 cut(s)	69, 258, 318
BspT107I	GGYRCC	1 cut(s)	184
BspTI	CTTAAG	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	487
BsrI	ACTGG	2 cut(s)	78, 516
BssECI	CCNNGG	2 cut(s)	34, 358
BssMI	GATC	3 cut(s)	74, 250, 310
BssNAI	GTATAC	1 cut(s)	258
BssSI	CACGAG	1 cut(s)	396
BssT1I	CCWWGG	2 cut(s)	34, 358
Bst1107I	GTATAC	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	396
Bst4CI	ACNGT	3 cut(s)	279, 444, 523
Bst6I	CTCTTC	2 cut(s)	300, 396
BstAFI	CTTAAG	1 cut(s)	218
BstAUI	TGTACA	1 cut(s)	487
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	1 cut(s)	105
BstDSI	CCRYGG	2 cut(s)	34, 358
BstF5I	GGATG	2 cut(s)	379, 540
BstHHI	GCGC	2 cut(s)	116, 160
BstKTI	GATC	3 cut(s)	77, 253, 313
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	3 cut(s)	74, 250, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	568
BstSCI	CCNGG	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	98
BstV2I	GAAGAC	2 cut(s)	273, 291
BstX2I	RGATCY	3 cut(s)	74, 250, 310
BstYI	RGATCY	3 cut(s)	74, 250, 310
BstZ17I	GTATAC	1 cut(s)	258
BsuRI	GGCC	3 cut(s)	213, 357, 515
BtgI	CCRYGG	2 cut(s)	34, 358
BtsCI	GGATG	2 cut(s)	379, 540
BtsI	GCAGTG	2 cut(s)	133, 632
BtsIMutI	CAGTG	4 cut(s)	133, 449, 572, 632
Cac8I	GCNNGC	1 cut(s)	418
CaiI	CAGNNNCTG	1 cut(s)	155
CfoI	GCGC	2 cut(s)	116, 160
Cfr13I	GGNCC	2 cut(s)	152, 201
CseI	GACGC	1 cut(s)	626
Csp6I	GTAC	3 cut(s)	185, 488, 519
CviAII	CATG	5 cut(s)	35, 269, 359, 566, 641
CviJI	RGCY	9 cut(s)	111, 213, 223, 241, 357, 416, 420, 515, 571
CviKI_1	RGCY	9 cut(s)	111, 213, 223, 241, 357, 416, 420, 515, 571
CviQI	GTAC	3 cut(s)	185, 488, 519
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	3 cut(s)	76, 252, 312
DpnII	GATC	3 cut(s)	74, 250, 310
DraI	TTTAAA	1 cut(s)	651
EaeI	YGGCCR	1 cut(s)	513
Eam1104I	CTCTTC	2 cut(s)	300, 396
EarI	CTCTTC	2 cut(s)	300, 396
Eco130I	CCWWGG	2 cut(s)	34, 358
Eco47I	GGWCC	2 cut(s)	152, 201
Eco57I	CTGAAG	2 cut(s)	324, 432
EcoO109I	RGGNCCY	2 cut(s)	152, 201
EcoT14I	CCWWGG	2 cut(s)	34, 358
ErhI	CCWWGG	2 cut(s)	34, 358
FaeI	CATG	5 cut(s)	38, 272, 362, 569, 644
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	5 cut(s)	34, 268, 358, 565, 640
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	1 cut(s)	112
FokI	GGATG	2 cut(s)	366, 547
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	3 cut(s)	138, 192, 417
FspI	TGCGCA	2 cut(s)	115, 159
GlaI	GCGC	2 cut(s)	115, 159
GluI	GCNGC	1 cut(s)	112
HaeIII	GGCC	3 cut(s)	213, 357, 515
HapII	CCGG	1 cut(s)	294
HgaI	GACGC	1 cut(s)	626
HhaI	GCGC	2 cut(s)	116, 160
Hin1II	CATG	5 cut(s)	38, 272, 362, 569, 644
Hin6I	GCGC	2 cut(s)	114, 158
HinP1I	GCGC	2 cut(s)	114, 158
HinfI	GANTC	2 cut(s)	176, 407
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	2 cut(s)	16, 621
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	6 cut(s)	25, 44, 106, 304, 372, 412
Hpy188III	TCNNGA	1 cut(s)	528
Hpy8I	GTNNAC	1 cut(s)	258
HpyAV	CCTTC	2 cut(s)	198, 525
HpyCH4III	ACNGT	3 cut(s)	279, 444, 523
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	4 cut(s)	452, 476, 548, 562
HpyF10VI	GCNNNNNNNGC	1 cut(s)	568
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	1 cut(s)	543
Hsp92II	CATG	5 cut(s)	38, 272, 362, 569, 644
HspAI	GCGC	2 cut(s)	114, 158
KpnI	GGTACC	1 cut(s)	188
Kzo9I	GATC	3 cut(s)	74, 250, 310
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	2 cut(s)	124, 388
MaeI	CTAG	3 cut(s)	138, 192, 417
MaeII	ACGT	1 cut(s)	543
MalI	GATC	3 cut(s)	76, 252, 312
MboI	GATC	3 cut(s)	74, 250, 310
MboII	GAAGA	6 cut(s)	68, 71, 273, 291, 317, 413
MflI	RGATCY	3 cut(s)	74, 250, 310
MlsI	TGGCCA	1 cut(s)	515
MluCI	AATT	5 cut(s)	19, 51, 119, 625, 657
MluNI	TGGCCA	1 cut(s)	515
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	4 cut(s)	5, 301, 397, 451
Mox20I	TGGCCA	1 cut(s)	515
MscI	TGGCCA	1 cut(s)	515
MseI	TTAA	4 cut(s)	18, 219, 650, 661
MslI	CAYNNNNRTG	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	515
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	295
Mva1269I	GAATGC	1 cut(s)	564
MwoI	GCNNNNNNNGC	1 cut(s)	568
NciI	CCSGG	1 cut(s)	295
NcoI	CCATGG	2 cut(s)	34, 358
NdeII	GATC	3 cut(s)	74, 250, 310
NheI	GCTAGC	1 cut(s)	416
NlaIII	CATG	5 cut(s)	38, 272, 362, 569, 644
NlaIV	GGNNCC	1 cut(s)	186
NsbI	TGCGCA	2 cut(s)	115, 159
PctI	GAATGC	1 cut(s)	564
PfeI	GAWTC	1 cut(s)	407
PkrI	GCNGC	1 cut(s)	113
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PpuMI	RGGWCCY	2 cut(s)	152, 201
Psp1406I	AACGTT	1 cut(s)	543
Psp5II	RGGWCCY	2 cut(s)	152, 201
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	2 cut(s)	152, 201
PspPPI	RGGWCCY	2 cut(s)	152, 201
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	3 cut(s)	74, 250, 310
RsaI	GTAC	3 cut(s)	186, 489, 520
RsaNI	GTAC	3 cut(s)	185, 488, 519
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	4 cut(s)	18, 219, 650, 661
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	3 cut(s)	74, 250, 310
Sau96I	GGNCC	2 cut(s)	152, 201
ScaI	AGTACT	1 cut(s)	520
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	295
SetI	ASST	9 cut(s)	113, 154, 190, 206, 243, 418, 422, 462, 546
SfaNI	GCATC	2 cut(s)	124, 388
SinI	GGWCC	2 cut(s)	152, 201
SmiI	ATTTAAAT	1 cut(s)	651
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	5 cut(s)	19, 51, 119, 625, 657
SspMI	CTAG	3 cut(s)	138, 192, 417
StyD4I	CCNGG	1 cut(s)	293
StyI	CCWWGG	2 cut(s)	34, 358
SwaI	ATTTAAAT	1 cut(s)	651
TaaI	ACNGT	3 cut(s)	279, 444, 523
TaiI	ACGT	1 cut(s)	546
TaqI	TCGA	1 cut(s)	164
TasI	AATT	5 cut(s)	19, 51, 119, 625, 657
TatI	WGTACW	2 cut(s)	487, 518
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	4 cut(s)	18, 219, 650, 661
Tru9I	TTAA	4 cut(s)	18, 219, 650, 661
TscAI	CASTG	4 cut(s)	133, 449, 579, 639
TseI	GCWGC	1 cut(s)	111
TspDTI	ATGAA	2 cut(s)	285, 551
TspRI	CASTG	4 cut(s)	133, 449, 579, 639
Vha464I	CTTAAG	1 cut(s)	218
VpaK11BI	GGWCC	2 cut(s)	152, 201
XmiI	GTMKAC	1 cut(s)	257
XspI	CTAG	3 cut(s)	138, 192, 417
ZrmI	AGTACT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.