Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006450

Physical Location & Seq

Genomic Coordinates Reverse (-)

11943901 .. 11946606

Gene Structure 2706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGTTATTTAACCATGACATTATAAATAAAAAAGAACGTGAAAGGCAAGGTAACAAGAGGACCAACACGTGTTCCACTGGTCCTAGTCACTGTCAAAATCTCTGCTTCCCAATTCCTTCTTCCTCTCAAATATTTACACTTCCTAACCCACCCCAAAACCACACGCCTTTCTCACTCTACACCCCCAAAGTTTCAGACTTTCTTGAGAGAGACAGGCAAAGAGAGAATCAAACAATCGAAGAAATGGCTGATCCGAAACGAGGACCACCAGAAAAACCCAGACCCAACAATTACAGTTATAACTCCAACCAGTACTACGTGGGAACATCCGAAGCCCAATGGACGTCGTGGCTGATTCCGATGTTTGTGGTGGCCAATATTGTTGTCTTCATCATCGCCATGATCATCAACAACTGCCCAAAACACAATCTTGGTTTCGATGGAAAGTGCGTGGCTAAGTTTCTTGGTCGGCTTTCGTTCCAGCCTCTCAAGGAGAACCCTCTGTTTGGTCCCTCTTCTAAGACATTGAAAAAATTGGGAGCTCTTGAATGGTTCAAGGTTGTACATGGGCATCAAGGATGGAGACTTTTCACATGTATGTGGTTGCACGCCGGTGTCATCCATTTGCTTGTAAACATGCTGAGCTTGATCTTTATTGGCATCCGTCTTGAACAGCAATTTGGATTCGTACGTGTGGGGATAATCTACCTGTTGTCAGGATTTGGTGGAAGCATATTATTTGCCCTTTTCATTCAGAGTAATAATATTTCTGTTGGAGCTTCTGGCGCTTTGTTTGGACTTCTCGGAGCTATGTTATCAGAGCTTATCACTAACTGGAGCATATACACCAATAAGGCTGCGGCTTTATTAACGCTCATAGTCATTGTCGCCATTAACTTAGCAGTTGGAATTCTTCCTCATGTTGGCAACTTCGCCCACATTGGAGGATTCTTGACCGGGTTTCTCCTTGGCTTTATTTTTCTACTTCGTCCCCAGTTTGGATGGATAGAGTCTCGGAATCTTCCAGCCAACACTCGTGTCAAATCTAAGCACAAGGCTTACCAATATGTTCTTGTGGTGGTTGCCTCTGCCTTACTGATTGCCGGATTAACTACAGGATTGGTGTTTCTGTTCAAAGGAGAGAACTTAAACAAGCACTGCGGCTGGTGCCATTACCTAAGCTGTGTGCCAACGTCAAAATGGAGATGCTGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006508 GO:0006807 GO:0006928 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0016787 GO:0017171 GO:0019222 GO:0019538 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070011 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:0140096 GO:1901184 GO:1901564 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

406

Amino Acids

45.44

Weight (kDa)

9.61

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	191 - 328	1.7e-41	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G12750 AT1G63120 AT4G23070
fragaria_vesca	FvH4_5g01700 FvH4_5g01700 FvH4_5g01700
malus_domestica	MD04G1065500.v1.1
prunus_persica	Prupe.5G092700_v2.0.a1
pyrus_communis	pycom04g05900 pycom06g07360
rosa_chinensis	RchiOBHm_Chr7g0199021
rosa_laevigata	RLG00000003823
rosa_multiflora	Rmu_sc0006266.1_g000029
rosa_roxburghii	Rroxscaffold_3G00257210
rosa_rugosa	Rorug07G0052100
rosa_samantha	Rh7AG175200 Rh7BG178600 Rh7CG184400 Rh7DG178000
rosa_wichuraiana	Rw7G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	23, 300
AatII	GACGTC	1 cut(s)	347
AccB1I	GGYRCC	1 cut(s)	1167
AciI	CCGC	2 cut(s)	860, 1161
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	909
AcvI	CACGTG	1 cut(s)	69
AcyI	GRCGYC	1 cut(s)	344
AfaI	GTAC	3 cut(s)	314, 564, 690
AfiI	CCNNNNNNNGG	4 cut(s)	260, 506, 923, 998
AflIII	ACRYGT	4 cut(s)	66, 68, 593, 691
AgsI	TTSAA	5 cut(s)	529, 548, 556, 671, 1135
AjuI	GAANNNNNNNTTGG	4 cut(s)	103, 135, 663, 695
AleI	CACNNNNGTG	1 cut(s)	612
AluBI	AGCT	6 cut(s)	542, 645, 779, 809, 823, 1182
AluI	AGCT	6 cut(s)	542, 645, 779, 809, 823, 1182
Alw21I	GWGCWC	1 cut(s)	544
Alw26I	GTCTC	3 cut(s)	204, 577, 1017
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	1 cut(s)	372
ApeKI	GCWGC	1 cut(s)	857
ApoI	RAATTY	1 cut(s)	909
AspLEI	GCGC	1 cut(s)	788
AspS9I	GGNCC	4 cut(s)	60, 80, 263, 509
AsuC2I	CCSGG	1 cut(s)	958
AvaII	GGWCC	4 cut(s)	60, 80, 263, 509
BalI	TGGCCA	1 cut(s)	374
BanI	GGYRCC	1 cut(s)	1167
BanII	GRGCYC	1 cut(s)	544
BauI	CACGAG	1 cut(s)	1035
BbrPI	CACGTG	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	379
Bbv12I	GWGCWC	1 cut(s)	544
BbvI	GCAGC	1 cut(s)	844
BccI	CCATC	3 cut(s)	434, 573, 996
BclI	TGATCA	1 cut(s)	402
BcnI	CCSGG	1 cut(s)	958
BcoDI	GTCTC	3 cut(s)	204, 577, 1017
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	1113
BfoI	RGCGCY	1 cut(s)	789
BisI	GCNGC	3 cut(s)	858, 861, 1162
BlpI	GCTNAGC	1 cut(s)	641
BlsI	GCNGC	3 cut(s)	859, 862, 1163
BmcAI	AGTACT	1 cut(s)	314
Bme1390I	CCNGG	1 cut(s)	958
Bme18I	GGWCC	4 cut(s)	60, 80, 263, 509
BmgT120I	GGNCC	4 cut(s)	60, 80, 263, 509
BmiI	GGNNCC	2 cut(s)	511, 1169
BmrFI	CCNGG	1 cut(s)	958
BmrI	ACTGGG	1 cut(s)	988
BmsI	GCATC	3 cut(s)	580, 669, 1196
BmuI	ACTGGG	1 cut(s)	988
BpiI	GAAGAC	1 cut(s)	379
BpmI	CTGGAG	1 cut(s)	856
Bpu10I	CCTNAGC	1 cut(s)	1178
Bpu1102I	GCTNAGC	1 cut(s)	641
BpuEI	CTTGAG	2 cut(s)	224, 473
BpuMI	CCSGG	1 cut(s)	958
BsaAI	YACGTR	3 cut(s)	69, 319, 692
BsaHI	GRCGYC	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	967
Bsc4I	CCNNNNNNNGG	4 cut(s)	260, 506, 923, 998
Bse118I	RCCGGY	1 cut(s)	611
Bse1I	ACTGG	4 cut(s)	82, 310, 839, 994
BseDI	CCNNGG	1 cut(s)	967
BseGI	GGATG	5 cut(s)	326, 584, 618, 660, 1007
BseLI	CCNNNNNNNGG	4 cut(s)	260, 506, 923, 998
BseMII	CTCAG	1 cut(s)	632
BseNI	ACTGG	4 cut(s)	82, 310, 839, 994
BseXI	GCAGC	1 cut(s)	844
BshFI	GGCC	1 cut(s)	374
BshNI	GGYRCC	1 cut(s)	1167
BsiHKAI	GWGCWC	1 cut(s)	544
BsiSI	CCGG	3 cut(s)	612, 957, 1104
BsiWI	CGTACG	1 cut(s)	688
BslFI	GGGAC	2 cut(s)	495, 975
BslI	CCNNNNNNNGG	4 cut(s)	260, 506, 923, 998
BsmAI	GTCTC	3 cut(s)	204, 577, 1017
BsmFI	GGGAC	2 cut(s)	495, 975
BsnI	GGCC	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp1407I	TGTACA	1 cut(s)	562
Bsp143I	GATC	3 cut(s)	250, 402, 648
Bsp1720I	GCTNAGC	1 cut(s)	641
BspACI	CCGC	2 cut(s)	860, 1161
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	1 cut(s)	633
BspLI	GGNNCC	2 cut(s)	511, 1169
BspPI	GGATC	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	1167
BsrFI	RCCGGY	1 cut(s)	611
BsrGI	TGTACA	1 cut(s)	562
BsrI	ACTGG	4 cut(s)	82, 310, 839, 994
BssAI	RCCGGY	1 cut(s)	611
BssECI	CCNNGG	1 cut(s)	967
BssMI	GATC	3 cut(s)	250, 402, 648
BssNI	GRCGYC	1 cut(s)	344
BssSI	CACGAG	1 cut(s)	1035
BssT1I	CCWWGG	1 cut(s)	967
Bst2BI	CACGAG	1 cut(s)	1035
Bst4CI	ACNGT	2 cut(s)	92, 296
Bst6I	CTCTTC	1 cut(s)	520
BstACI	GRCGYC	1 cut(s)	344
BstAUI	TGTACA	1 cut(s)	562
BstBAI	YACGTR	3 cut(s)	69, 319, 692
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	6 cut(s)	456, 519, 641, 898, 1047, 1178
BstF5I	GGATG	5 cut(s)	326, 584, 618, 660, 1007
BstH2I	RGCGCY	1 cut(s)	789
BstHHI	GCGC	1 cut(s)	788
BstKTI	GATC	3 cut(s)	253, 405, 651
BstMAI	GTCTC	3 cut(s)	204, 577, 1017
BstMBI	GATC	3 cut(s)	250, 402, 648
BstMWI	GCNNNNNNNGC	2 cut(s)	785, 1167
BstNSI	RCATGY	2 cut(s)	597, 640
BstSCI	CCNGG	1 cut(s)	956
BstSFI	CTRYAG	1 cut(s)	1113
BstV1I	GCAGC	1 cut(s)	844
BstV2I	GAAGAC	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	374
BtgZI	GCGATG	1 cut(s)	379
BtsCI	GGATG	5 cut(s)	326, 584, 618, 660, 1007
BtsI	GCAGTG	1 cut(s)	1156
BtsIMutI	CAGTG	3 cut(s)	75, 88, 1156
Cac8I	GCNNGC	1 cut(s)	609
CfoI	GCGC	1 cut(s)	788
Cfr10I	RCCGGY	1 cut(s)	611
Cfr13I	GGNCC	4 cut(s)	60, 80, 263, 509
Csp6I	GTAC	3 cut(s)	313, 563, 689
CviAII	CATG	6 cut(s)	14, 400, 566, 594, 637, 920
CviQI	GTAC	3 cut(s)	313, 563, 689
DdeI	CTNAG	6 cut(s)	456, 519, 641, 898, 1047, 1178
DpnI	GATC	3 cut(s)	252, 404, 650
DpnII	GATC	3 cut(s)	250, 402, 648
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	520
EarI	CTCTTC	1 cut(s)	520
Ecl136II	GAGCTC	1 cut(s)	542
Eco130I	CCWWGG	1 cut(s)	967
Eco24I	GRGCYC	1 cut(s)	544
Eco47I	GGWCC	4 cut(s)	60, 80, 263, 509
Eco53kI	GAGCTC	1 cut(s)	542
Eco72I	CACGTG	1 cut(s)	69
EcoICRI	GAGCTC	1 cut(s)	542
EcoRI	GAATTC	1 cut(s)	909
EcoT14I	CCWWGG	1 cut(s)	967
EcoT38I	GRGCYC	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	967
FaeI	CATG	6 cut(s)	17, 403, 569, 597, 640, 923
FaqI	GGGAC	2 cut(s)	495, 975
FatI	CATG	6 cut(s)	13, 399, 565, 593, 636, 919
FbaI	TGATCA	1 cut(s)	402
Fnu4HI	GCNGC	3 cut(s)	858, 861, 1162
FokI	GGATG	5 cut(s)	313, 591, 605, 647, 1014
FriOI	GRGCYC	1 cut(s)	544
Fsp4HI	GCNGC	3 cut(s)	858, 861, 1162
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	1 cut(s)	787
GluI	GCNGC	3 cut(s)	858, 861, 1162
GsuI	CTGGAG	1 cut(s)	856
HaeII	RGCGCY	1 cut(s)	789
HaeIII	GGCC	1 cut(s)	374
HapII	CCGG	3 cut(s)	612, 957, 1104
HhaI	GCGC	1 cut(s)	788
Hin1I	GRCGYC	1 cut(s)	344
Hin1II	CATG	6 cut(s)	17, 403, 569, 597, 640, 923
Hin6I	GCGC	1 cut(s)	786
HinP1I	GCGC	1 cut(s)	786
HinfI	GANTC	6 cut(s)	226, 355, 684, 948, 1010, 1018
HpaII	CCGG	3 cut(s)	612, 957, 1104
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	8 cut(s)	196, 255, 331, 360, 756, 806, 820, 1017
Hpy188III	TCNNGA	5 cut(s)	203, 545, 668, 717, 952
Hpy8I	GTNNAC	1 cut(s)	634
Hpy99I	CGWCG	1 cut(s)	349
HpyAV	CCTTC	1 cut(s)	126
HpyCH4III	ACNGT	2 cut(s)	92, 296
HpyCH4IV	ACGT	6 cut(s)	37, 68, 318, 344, 691, 1193
HpyCH4V	TGCA	1 cut(s)	607
HpyF10VI	GCNNNNNNNGC	2 cut(s)	785, 1167
HpyF3I	CTNAG	6 cut(s)	456, 519, 641, 898, 1047, 1178
HpySE526I	ACGT	6 cut(s)	37, 68, 318, 344, 691, 1193
Hsp92I	GRCGYC	1 cut(s)	344
Hsp92II	CATG	6 cut(s)	17, 403, 569, 597, 640, 923
HspAI	GCGC	1 cut(s)	786
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	3 cut(s)	250, 402, 648
LmnI	GCTCC	4 cut(s)	539, 776, 806, 837
Lsp1109I	GCAGC	1 cut(s)	844
LweI	GCATC	3 cut(s)	580, 669, 1196
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	6 cut(s)	37, 68, 318, 344, 691, 1193
MaeIII	GTNAC	2 cut(s)	50, 86
MalI	GATC	3 cut(s)	252, 404, 650
MboI	GATC	3 cut(s)	250, 402, 648
MboII	GAAGA	6 cut(s)	111, 251, 379, 507, 905, 1013
MhlI	GDGCHC	1 cut(s)	544
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	5 cut(s)	111, 289, 533, 677, 909
MluNI	TGGCCA	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	1019
MmeI	TCCRAC	3 cut(s)	330, 754, 886
MnlI	CCTC	9 cut(s)	51, 133, 254, 495, 510, 523, 927, 938, 1096
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	5 cut(s)	9, 869, 894, 1109, 1148
MslI	CAYNNNNRTG	4 cut(s)	398, 596, 598, 612
Msp20I	TGGCCA	1 cut(s)	374
MspI	CCGG	3 cut(s)	612, 957, 1104
MspR9I	CCNGG	1 cut(s)	958
MwoI	GCNNNNNNNGC	2 cut(s)	785, 1167
NciI	CCSGG	1 cut(s)	958
NdeII	GATC	3 cut(s)	250, 402, 648
NlaIII	CATG	6 cut(s)	17, 403, 569, 597, 640, 923
NlaIV	GGNNCC	2 cut(s)	511, 1169
NmuCI	GTSAC	1 cut(s)	86
NspI	RCATGY	2 cut(s)	597, 640
OliI	CACNNNNGTG	1 cut(s)	612
PciI	ACATGT	1 cut(s)	593
PfeI	GAWTC	5 cut(s)	226, 355, 684, 948, 1018
Pfl23II	CGTACG	1 cut(s)	688
PkrI	GCNGC	3 cut(s)	859, 862, 1163
PleI	GAGTC	1 cut(s)	1018
PmaCI	CACGTG	1 cut(s)	69
PmlI	CACGTG	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	1018
Ppu21I	YACGTR	3 cut(s)	69, 319, 692
PscI	ACATGT	1 cut(s)	593
PsiI	TTATAA	2 cut(s)	23, 300
Psp124BI	GAGCTC	1 cut(s)	544
PspCI	CACGTG	1 cut(s)	69
PspLI	CGTACG	1 cut(s)	688
PspN4I	GGNNCC	2 cut(s)	511, 1169
PspPI	GGNCC	4 cut(s)	60, 80, 263, 509
RsaI	GTAC	3 cut(s)	314, 564, 690
RsaNI	GTAC	3 cut(s)	313, 563, 689
RseI	CAYNNNNRTG	4 cut(s)	398, 596, 598, 612
SacI	GAGCTC	1 cut(s)	544
SaqAI	TTAA	5 cut(s)	9, 869, 894, 1109, 1148
SatI	GCNGC	3 cut(s)	858, 861, 1162
Sau3AI	GATC	3 cut(s)	250, 402, 648
Sau96I	GGNCC	4 cut(s)	60, 80, 263, 509
ScaI	AGTACT	1 cut(s)	314
SchI	GAGTC	1 cut(s)	1019
ScrFI	CCNGG	1 cut(s)	958
SduI	GDGCHC	1 cut(s)	544
SfaNI	GCATC	3 cut(s)	580, 669, 1196
SfcI	CTRYAG	1 cut(s)	1113
SgrAI	CRCCGGYG	1 cut(s)	611
SinI	GGWCC	4 cut(s)	60, 80, 263, 509
SmiMI	CAYNNNNRTG	4 cut(s)	398, 596, 598, 612
SmlI	CTYRAG	2 cut(s)	203, 488
SmoI	CTYRAG	2 cut(s)	203, 488
Sse9I	AATT	5 cut(s)	111, 289, 533, 677, 909
SsiI	CCGC	2 cut(s)	860, 1161
SspI	AATATT	3 cut(s)	132, 379, 766
SspMI	CTAG	1 cut(s)	84
SstI	GAGCTC	1 cut(s)	544
StyD4I	CCNGG	1 cut(s)	956
StyI	CCWWGG	1 cut(s)	967
TaaI	ACNGT	2 cut(s)	92, 296
TaiI	ACGT	6 cut(s)	40, 71, 321, 347, 694, 1196
TaqI	TCGA	2 cut(s)	237, 438
TasI	AATT	5 cut(s)	111, 289, 533, 677, 909
TatI	WGTACW	2 cut(s)	312, 562
TauI	GCSGC	2 cut(s)	863, 1164
TfiI	GAWTC	5 cut(s)	226, 355, 684, 948, 1018
Tru1I	TTAA	5 cut(s)	9, 869, 894, 1109, 1148
Tru9I	TTAA	5 cut(s)	9, 869, 894, 1109, 1148
TscAI	CASTG	3 cut(s)	82, 95, 1163
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	1 cut(s)	857
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	2 cut(s)	379, 739
TspGWI	ACGGA	1 cut(s)	653
TspRI	CASTG	3 cut(s)	82, 95, 1163
VpaK11BI	GGWCC	4 cut(s)	60, 80, 263, 509
XapI	RAATTY	1 cut(s)	909
XceI	RCATGY	2 cut(s)	597, 640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1197
XspI	CTAG	1 cut(s)	84
ZraI	GACGTC	1 cut(s)	345
ZrmI	AGTACT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.