pycom06g08500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0013555
Physical Location & Seq
Forward (+)
13706761 .. 13708061
1301 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 765 bp
ATGGCTACCGTTGTCAATTTCTCTGGCAAAACCACGAGTCAGAGAATTTGCCTCAAACCAATGGCAGGACCAGGACCAGGACCAGCCATTGGTTCCTTGGCTATCAAAAGAACATGCCAATTTCCCCTCAGCAGAACAAATACCGTGCAACATTGCATCTATATGACAAGGAAGGCACAAGATAGACTATTGAATGAGCACAGGGTGTTTCCTGCATTAGCAGCAACGAGAAACTTGGACATTTTTCCGGGATCTCCTTCTCCATCGGACACAATCAAGCAATTCTACAGATACATCAATGAGAAAAACTTAAAGCAACTACGTGATCACATCTCAGAAGACTGCTACATTGAAGAGTGCTCTTTCAGCACACCATTACAAGGCAAAAAGGAGGTTATGAGTTTTTTTGAGCAGCTAACTGCAGGCATGGGCCAAAATGTTAAGTTCATTTTACGACACGTATGCGAAGGAGATGAACTAACAGCAGCAGCAAACTGGCATATGGAATGGAAAAACAAACAGATCCCCTTCACCAGAGGCTGTAGCTTCTTCGAATGCTCCAAAGAAGGAGAAAAAATAATAATCAAGAAAGCACAGATAGTTATTGAATCACCAATCAAACCAGGAACACTAGTGCTGAGTATGTTAAAGACGGTGACTTCACTATTTGATGGTTTCCCGAAAATTGCTGAATGTACGTTAGCTTTCACCATATATTTCAAAACCTCAGCATATCGTACATGTCACAGATATTACTTAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SnoaL_2

Protein Analysis

255

Amino Acids

28.79

Weight (kDa)

9.2

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SnoaL_2 PF12680 93 - 190 1.9e-08 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41470
fragaria_vesca FvH4_5g03000
malus_domestica MD06G1089000.v1.1
prunus_persica Prupe.5G104900_v2.0.a1 Prupe.5G104900_v2.0.a1 Prupe.5G104900_v2.0.a1
pyrus_communis pycom06g08500
rosa_chinensis RchiOBHm_Chr7g0196861
rosa_laevigata RLG00000003983
rosa_multiflora Rmu_sc0001083.1_g000018
rosa_roxburghii Rroxscaffold_3G00258900
rosa_rugosa Rorug07G0036200 Rorug07G0036300
rosa_samantha Rh7AG160800 Rh7BG162700 Rh7CG169100 Rh7DG162200
rosa_wichuraiana Rw7G014060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 89
AclWI GGATC 2 cut(s) 259, 517
AcsI RAATTY 1 cut(s) 45
AdeI CACNNNGTG 1 cut(s) 205
AfaI GTAC 2 cut(s) 697, 739
AfiI CCNNNNNNNGG 4 cut(s) 65, 77, 89, 380
AflIII ACRYGT 2 cut(s) 457, 740
AgsI TTSAA 4 cut(s) 193, 353, 608, 721
AhlI ACTAGT 1 cut(s) 631
AjnI CCWGG 3 cut(s) 70, 76, 622
AluBI AGCT 3 cut(s) 415, 546, 704
AluI AGCT 3 cut(s) 415, 546, 704
Alw21I GWGCWC 2 cut(s) 201, 362
AlwI GGATC 2 cut(s) 259, 517
AlwNI CAGNNNCTG 1 cut(s) 540
AoxI GGCC 1 cut(s) 430
ApeKI GCWGC 4 cut(s) 221, 412, 485, 488
ApoI RAATTY 1 cut(s) 45
AspS9I GGNCC 4 cut(s) 68, 74, 80, 430
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 4 cut(s) 523, 603, 667, 700
AsuII TTCGAA 1 cut(s) 552
AvaII GGWCC 3 cut(s) 68, 74, 80
BauI CACGAG 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 345
Bbv12I GWGCWC 2 cut(s) 201, 362
BbvCI CCTCAGC 2 cut(s) 128, 727
BbvI GCAGC 4 cut(s) 233, 424, 497, 500
BccI CCATC 2 cut(s) 271, 665
BcgI CGANNNNNNTGC 2 cut(s) 444, 478
BciT130I CCWGG 3 cut(s) 72, 78, 624
BclI TGATCA 1 cut(s) 325
BcnI CCSGG 1 cut(s) 249
BcuI ACTAGT 1 cut(s) 631
BfaI CTAG 1 cut(s) 632
BfmI CTRYAG 3 cut(s) 286, 420, 541
BisI GCNGC 4 cut(s) 222, 413, 486, 489
BlsI GCNGC 4 cut(s) 223, 414, 487, 490
Bme1390I CCNGG 4 cut(s) 72, 78, 249, 624
Bme18I GGWCC 3 cut(s) 68, 74, 80
BmgT120I GGNCC 4 cut(s) 68, 74, 80, 430
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 4 cut(s) 72, 78, 249, 624
BmsI GCATC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 345
Bpu10I CCTNAGC 2 cut(s) 128, 727
Bpu14I TTCGAA 1 cut(s) 552
BpuMI CCSGG 1 cut(s) 249
BsaAI YACGTR 2 cut(s) 323, 460
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 77, 89, 380
Bse1I ACTGG 1 cut(s) 500
Bse3DI GCAATG 1 cut(s) 151
BseBI CCWGG 3 cut(s) 72, 78, 624
BseDI CCNNGG 1 cut(s) 96
BseLI CCNNNNNNNGG 4 cut(s) 65, 77, 89, 380
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 4 cut(s) 142, 348, 629, 741
BseNI ACTGG 1 cut(s) 500
BseXI GCAGC 4 cut(s) 233, 424, 497, 500
BshFI GGCC 1 cut(s) 432
BsiHKAI GWGCWC 2 cut(s) 201, 362
BsiSI CCGG 1 cut(s) 248
BslI CCNNNNNNNGG 4 cut(s) 65, 77, 89, 380
BsmI GAATGC 1 cut(s) 560
BsnI GGCC 1 cut(s) 432
Bsp119I TTCGAA 1 cut(s) 552
Bsp1286I GDGCHC 2 cut(s) 201, 362
Bsp143I GATC 3 cut(s) 251, 325, 522
BspANI GGCC 1 cut(s) 432
BspCNI CTCAG 4 cut(s) 141, 347, 630, 740
BspLI GGNNCC 1 cut(s) 94
BspMAI CTGCAG 1 cut(s) 424
BspPI GGATC 2 cut(s) 259, 517
BspT104I TTCGAA 1 cut(s) 552
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 1 cut(s) 500
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 3 cut(s) 251, 325, 522
BssSI CACGAG 1 cut(s) 34
BssT1I CCWWGG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 34
Bst2UI CCWGG 3 cut(s) 72, 78, 624
Bst4CI ACNGT 3 cut(s) 10, 145, 655
Bst6I CTCTTC 1 cut(s) 348
BstBAI YACGTR 2 cut(s) 323, 460
BstBI TTCGAA 1 cut(s) 552
BstC8I GCNNGC 1 cut(s) 424
BstDEI CTNAG 4 cut(s) 128, 334, 638, 727
BstKTI GATC 3 cut(s) 254, 328, 525
BstMBI GATC 3 cut(s) 251, 325, 522
BstMWI GCNNNNNNNGC 2 cut(s) 221, 366
BstNI CCWGG 3 cut(s) 72, 78, 624
BstNSI RCATGY 2 cut(s) 117, 744
BstSCI CCNGG 4 cut(s) 70, 76, 247, 622
BstSFI CTRYAG 3 cut(s) 286, 420, 541
BstV1I GCAGC 4 cut(s) 233, 424, 497, 500
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 2 cut(s) 251, 522
BstYI RGATCY 2 cut(s) 251, 522
BsuRI GGCC 1 cut(s) 432
Cac8I GCNNGC 1 cut(s) 424
CaiI CAGNNNCTG 1 cut(s) 540
Cfr13I GGNCC 4 cut(s) 68, 74, 80, 430
Csp6I GTAC 2 cut(s) 696, 738
CviAII CATG 3 cut(s) 114, 427, 741
CviJI RGCY 8 cut(s) 5, 86, 101, 415, 432, 540, 546, 704
CviKI_1 RGCY 8 cut(s) 5, 86, 101, 415, 432, 540, 546, 704
CviQI GTAC 2 cut(s) 696, 738
DdeI CTNAG 4 cut(s) 128, 334, 638, 727
DpnI GATC 3 cut(s) 253, 327, 524
DpnII GATC 3 cut(s) 251, 325, 522
DraIII CACNNNGTG 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 96
Eco47I GGWCC 3 cut(s) 68, 74, 80
EcoRII CCWGG 3 cut(s) 70, 76, 622
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 3 cut(s) 117, 430, 744
FatI CATG 3 cut(s) 113, 426, 740
FauNDI CATATG 1 cut(s) 501
FbaI TGATCA 1 cut(s) 325
Fnu4HI GCNGC 4 cut(s) 222, 413, 486, 489
Fsp4HI GCNGC 4 cut(s) 222, 413, 486, 489
FspBI CTAG 1 cut(s) 632
GluI GCNGC 4 cut(s) 222, 413, 486, 489
HaeIII GGCC 1 cut(s) 432
HapII CCGG 1 cut(s) 248
Hin1II CATG 3 cut(s) 117, 430, 744
HinfI GANTC 2 cut(s) 37, 608
HpaII CCGG 1 cut(s) 248
HphI GGTGA 4 cut(s) 523, 603, 667, 700
Hpy188I TCNGA 3 cut(s) 42, 268, 337
Hpy188III TCNNGA 2 cut(s) 586, 679
HpyAV CCTTC 5 cut(s) 166, 267, 461, 538, 560
HpyCH4III ACNGT 3 cut(s) 10, 145, 655
HpyCH4IV ACGT 3 cut(s) 322, 459, 698
HpyCH4V TGCA 4 cut(s) 148, 156, 215, 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 366
HpyF3I CTNAG 4 cut(s) 128, 334, 638, 727
HpySE526I ACGT 3 cut(s) 322, 459, 698
Hsp92II CATG 3 cut(s) 117, 430, 744
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 3 cut(s) 251, 325, 522
LmnI GCTCC 1 cut(s) 563
Lsp1109I GCAGC 4 cut(s) 233, 424, 497, 500
LweI GCATC 1 cut(s) 165
MaeI CTAG 1 cut(s) 632
MaeII ACGT 3 cut(s) 322, 459, 698
MaeIII GTNAC 2 cut(s) 655, 743
MalI GATC 3 cut(s) 253, 327, 524
MboI GATC 3 cut(s) 251, 325, 522
MboII GAAGA 3 cut(s) 350, 365, 541
MflI RGATCY 2 cut(s) 251, 522
MhlI GDGCHC 2 cut(s) 201, 362
MluCI AATT 5 cut(s) 16, 45, 119, 281, 684
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 5 cut(s) 62, 137, 385, 530, 736
MseI TTAA 4 cut(s) 311, 441, 647, 758
MslI CAYNNNNRTG 1 cut(s) 161
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 4 cut(s) 72, 78, 249, 624
Mva1269I GAATGC 1 cut(s) 560
MvaI CCWGG 3 cut(s) 72, 78, 624
MwoI GCNNNNNNNGC 2 cut(s) 221, 366
NciI CCSGG 1 cut(s) 249
NdeI CATATG 1 cut(s) 501
NdeII GATC 3 cut(s) 251, 325, 522
NlaIII CATG 3 cut(s) 117, 430, 744
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 2 cut(s) 655, 743
NspI RCATGY 2 cut(s) 117, 744
NspV TTCGAA 1 cut(s) 552
PciI ACATGT 1 cut(s) 740
PctI GAATGC 1 cut(s) 560
PfeI GAWTC 1 cut(s) 608
PflMI CCANNNNNTGG 1 cut(s) 89
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 4 cut(s) 223, 414, 487, 490
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
Ppu21I YACGTR 2 cut(s) 323, 460
PscI ACATGT 1 cut(s) 740
Psp6I CCWGG 3 cut(s) 70, 76, 622
PspGI CCWGG 3 cut(s) 70, 76, 622
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 4 cut(s) 68, 74, 80, 430
PstI CTGCAG 1 cut(s) 424
PstNI CAGNNNCTG 1 cut(s) 540
PsuI RGATCY 2 cut(s) 251, 522
RsaI GTAC 2 cut(s) 697, 739
RsaNI GTAC 2 cut(s) 696, 738
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 4 cut(s) 311, 441, 647, 758
SatI GCNGC 4 cut(s) 222, 413, 486, 489
Sau3AI GATC 3 cut(s) 251, 325, 522
Sau96I GGNCC 4 cut(s) 68, 74, 80, 430
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 4 cut(s) 72, 78, 249, 624
SduI GDGCHC 2 cut(s) 201, 362
SetI ASST 8 cut(s) 325, 396, 417, 462, 548, 701, 706, 728
SfaNI GCATC 1 cut(s) 165
SfcI CTRYAG 3 cut(s) 286, 420, 541
SfuI TTCGAA 1 cut(s) 552
SinI GGWCC 3 cut(s) 68, 74, 80
SmiMI CAYNNNNRTG 1 cut(s) 161
SpeI ACTAGT 1 cut(s) 631
Sse9I AATT 5 cut(s) 16, 45, 119, 281, 684
SspMI CTAG 1 cut(s) 632
StyD4I CCNGG 4 cut(s) 70, 76, 247, 622
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 3 cut(s) 10, 145, 655
TaiI ACGT 3 cut(s) 325, 462, 701
TaqI TCGA 1 cut(s) 552
TasI AATT 5 cut(s) 16, 45, 119, 281, 684
TfiI GAWTC 1 cut(s) 608
Tru1I TTAA 4 cut(s) 311, 441, 647, 758
Tru9I TTAA 4 cut(s) 311, 441, 647, 758
TseFI GTSAC 2 cut(s) 655, 743
TseI GCWGC 4 cut(s) 221, 412, 485, 488
Tsp45I GTSAC 2 cut(s) 655, 743
TspDTI ATGAA 2 cut(s) 436, 489
Van91I CCANNNNNTGG 1 cut(s) 89
VpaK11BI GGWCC 3 cut(s) 68, 74, 80
XapI RAATTY 1 cut(s) 45
XceI RCATGY 2 cut(s) 117, 744
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XspI CTAG 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.