pycom06g12290

Magnesium protoporphyrin IX methyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
17444562 .. 17446190
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1074 bp
ATGTATGGGGCCCCTCATCAACCATCCAACGTACACAGAGACACAGTTAAGCTCCAACTCTCTCTCTCGCCGGTCGGAGAGAGAAGTACCCAAAAACAAAAAATGGCATCCTCCGCCTCGCTATCTTCACCCCTCCACTTCCCCAACCCCAATCCCAGGCCCATATTCTCCCCAATGCCCACAAAACCCACCACCCTAAGACCCCCTGCCCCCACCACCACCGTCAAGCCCCTCTTCGTCCTCCCTCCCGCCGACGTCGACAGCGCCACTATCGCCGCCATTGGCGGCGGCTCGGTAGCCGCCCTCGCCGCCGCGCTCTCCTTATCGGACCCAGAAAACAGGCGCCGCCTCCAGGCTGAGGAGGTTGGCGGCGGCGACAAGGAGGTCGTGAAGGACTACTTCAACAAGTCCGGGTTCGAGCGGTGGAAGAAGATATACGGAGAGACGGATGACGTCAACAGGGTTCAGAGGGACATCAGGCTTGGCCACTCCAAGACCGTTGAGAATGTGATGAAGATGTTGACCGATGAGGGCCCACTTCAGGGGGTCTCTGTGTGCGACGCCGGGTGTGGGACCGGGTGCTTGGCCATTCCGTTGGCCAAGGAAGGGGCGGTTGTCACGGCTGCGGATATTTCAGCTGCCATGGTTGCAGAGGCTGAGAAGCAGGCAAAAGAGCAGCTTAAGTTAAGCAATGGCTTCTCAGCAGGGCCAGTACTGCCGAAATTCGAAGTGAAGGATTTGGAGAGCTTGGATGGGAAGTACGATACAGTGGTCTGTCTTGATGTTTTGATTCATTACCCGCAGAGCAAGGCTGATGGGATGATTGCCCATCTTGCTTCATTGGCGGAGAATCGCTTGCTTATAAGTTTTGCACCAAAGACATTGTATTATGATGTGCTGAAGAGGATAGGAGAGTTGTTCCCGGGGCCTTCGAAGGCAACAAGGGCGTATCTACATTCGGAGGCAGATGTGGAGAGAGCCTTGAAGAAGGTTGGGTGGAGGATAAGGAAGAGAGGACTAACCACTACACAATTTTATTTTTCAAGGCTGGTCGAGGCTGTTCCTGCTAAGTGA

Protein Analysis

358

Amino Acids

38.65

Weight (kDa)

9.07

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_23 PF13489 180 - 336 2.7e-11 Methyltransferase domain
Methyltransf_31 PF13847 182 - 268 1.3e-08 Methyltransferase domain
Methyltransf_25 PF13649 185 - 280 2.1e-12 Methyltransferase domain
Methyltransf_12 PF08242 187 - 281 2.3e-10 Methyltransferase domain
Methyltransf_11 PF08241 187 - 267 1e-09 Methyltransferase domain
Mg-por_mtran_C PF07109 259 - 354 1.6e-36 Magnesium-protoporphyrin IX methyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0009399)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 863
AasI GACNNNNNNGTC 1 cut(s) 383
AatII GACGTC 2 cut(s) 258, 456
AccB1I GGYRCC 1 cut(s) 342
AccBSI CCGCTC 1 cut(s) 421
AccI GTMKAC 1 cut(s) 258
AccII CGCG 1 cut(s) 314
AcoI YGGCCR 3 cut(s) 484, 585, 597
AcsI RAATTY 1 cut(s) 722
AcuI CTGAAG 2 cut(s) 524, 920
AcyI GRCGYC 4 cut(s) 255, 343, 453, 561
AfaI GTAC 4 cut(s) 33, 88, 714, 761
AfiI CCNNNNNNNGG 7 cut(s) 156, 352, 358, 541, 542, 570, 606
AflII CTTAAG 1 cut(s) 680
AgsI TTSAA 3 cut(s) 403, 985, 1044
AjnI CCWGG 2 cut(s) 155, 351
AluBI AGCT 4 cut(s) 52, 638, 679, 747
AluI AGCT 4 cut(s) 52, 638, 679, 747
Alw26I GTCTC 3 cut(s) 33, 437, 553
AlwNI CAGNNNCTG 1 cut(s) 656
Ama87I CYCGRG 1 cut(s) 922
AoxI GGCC 8 cut(s) 9, 158, 484, 532, 585, 597, 707, 926
ApaI GGGCCC 2 cut(s) 13, 536
ApeKI GCWGC 3 cut(s) 623, 638, 676
ApoI RAATTY 1 cut(s) 722
AspLEI GCGC 3 cut(s) 266, 316, 345
AspS9I GGNCC 9 cut(s) 9, 10, 159, 328, 532, 533, 573, 707, 926
AsuC2I CCSGG 5 cut(s) 412, 565, 577, 923, 924
AsuHPI GGTGA 1 cut(s) 120
AsuII TTCGAA 2 cut(s) 726, 932
AvaI CYCGRG 1 cut(s) 922
AvaII GGWCC 2 cut(s) 328, 573
BaeGI GKGCMC 2 cut(s) 13, 536
BaeI ACNNNNGTAYC 2 cut(s) 756, 789
BalI TGGCCA 3 cut(s) 486, 587, 599
BanI GGYRCC 1 cut(s) 342
BanII GRGCYC 2 cut(s) 13, 536
BarI GAAGNNNNNNTAC 2 cut(s) 419, 451
BbvCI CCTCAGC 1 cut(s) 357
BbvI GCAGC 3 cut(s) 610, 625, 688
BccI CCATC 4 cut(s) 31, 746, 809, 837
BceAI ACGGC 1 cut(s) 636
BciT130I CCWGG 2 cut(s) 157, 353
BcnI CCSGG 5 cut(s) 412, 565, 577, 923, 924
BcoDI GTCTC 3 cut(s) 33, 437, 553
BfoI RGCGCY 2 cut(s) 267, 346
BfrI CTTAAG 1 cut(s) 680
BmcAI AGTACT 1 cut(s) 714
Bme1390I CCNGG 7 cut(s) 157, 353, 412, 565, 577, 923, 924
Bme18I GGWCC 2 cut(s) 328, 573
BmeT110I CYCGRG 1 cut(s) 922
BmgT120I GGNCC 9 cut(s) 9, 10, 159, 328, 532, 533, 573, 707, 926
BmiI GGNNCC 8 cut(s) 10, 11, 12, 330, 344, 534, 574, 927
BmrFI CCNGG 7 cut(s) 157, 353, 412, 565, 577, 923, 924
BmsI GCATC 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 335
Bpu10I CCTNAGC 1 cut(s) 357
Bpu14I TTCGAA 2 cut(s) 726, 932
BpuMI CCSGG 5 cut(s) 412, 565, 577, 923, 924
BsaHI GRCGYC 4 cut(s) 255, 343, 453, 561
BsaI GGTCTC 1 cut(s) 553
BsaJI CCNNGG 5 cut(s) 155, 600, 642, 922, 923
Bsc4I CCNNNNNNNGG 7 cut(s) 156, 352, 358, 541, 542, 570, 606
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 710
Bse3DI GCAATG 1 cut(s) 697
BseBI CCWGG 2 cut(s) 157, 353
BseDI CCNNGG 5 cut(s) 155, 600, 642, 922, 923
BseGI GGATG 5 cut(s) 23, 107, 454, 757, 825
BseLI CCNNNNNNNGG 7 cut(s) 156, 352, 358, 541, 542, 570, 606
BseMI GCAATG 1 cut(s) 697
BseMII CTCAG 3 cut(s) 348, 648, 714
BseNI ACTGG 1 cut(s) 710
BseRI GAGGAG 1 cut(s) 374
BseSI GKGCMC 2 cut(s) 13, 536
BseXI GCAGC 3 cut(s) 610, 625, 688
Bsh1236I CGCG 1 cut(s) 314
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 8 cut(s) 11, 160, 486, 534, 587, 599, 709, 928
BshNI GGYRCC 1 cut(s) 342
BsiEI CGRYCG 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 922
BsiSI CCGG 5 cut(s) 71, 411, 564, 576, 923
BslFI GGGAC 2 cut(s) 485, 586
BslI CCNNNNNNNGG 7 cut(s) 156, 352, 358, 541, 542, 570, 606
BsmAI GTCTC 3 cut(s) 33, 437, 553
BsmBI CGTCTC 1 cut(s) 437
BsmFI GGGAC 2 cut(s) 485, 586
BsnI GGCC 8 cut(s) 11, 160, 486, 534, 587, 599, 709, 928
Bso31I GGTCTC 1 cut(s) 553
BsoBI CYCGRG 1 cut(s) 922
Bsp119I TTCGAA 2 cut(s) 726, 932
Bsp120I GGGCCC 2 cut(s) 9, 532
Bsp1286I GDGCHC 2 cut(s) 13, 536
Bsp19I CCATGG 1 cut(s) 642
BspANI GGCC 8 cut(s) 11, 160, 486, 534, 587, 599, 709, 928
BspCNI CTCAG 3 cut(s) 349, 649, 713
BspFNI CGCG 1 cut(s) 314
BspLI GGNNCC 8 cut(s) 10, 11, 12, 330, 344, 534, 574, 927
BspT104I TTCGAA 2 cut(s) 726, 932
BspT107I GGYRCC 1 cut(s) 342
BspTI CTTAAG 1 cut(s) 680
BspTNI GGTCTC 1 cut(s) 553
BsrBI CCGCTC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 697
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 1 cut(s) 710
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 5 cut(s) 155, 600, 642, 922, 923
BssNI GRCGYC 4 cut(s) 255, 343, 453, 561
BssT1I CCWWGG 2 cut(s) 600, 642
Bst2UI CCWGG 2 cut(s) 157, 353
Bst4CI ACNGT 4 cut(s) 46, 223, 499, 769
Bst6I CTCTTC 3 cut(s) 239, 896, 1004
BstACI GRCGYC 4 cut(s) 255, 343, 453, 561
BstAFI CTTAAG 1 cut(s) 680
BstBI TTCGAA 2 cut(s) 726, 932
BstC8I GCNNGC 2 cut(s) 666, 857
BstDEI CTNAG 5 cut(s) 197, 357, 657, 700, 1068
BstDSI CCRYGG 1 cut(s) 642
BstF5I GGATG 5 cut(s) 23, 107, 454, 757, 825
BstFNI CGCG 1 cut(s) 314
BstH2I RGCGCY 2 cut(s) 267, 346
BstHHI GCGC 3 cut(s) 266, 316, 345
BstMAI GTCTC 3 cut(s) 33, 437, 553
BstMCI CGRYCG 1 cut(s) 75
BstNI CCWGG 2 cut(s) 157, 353
BstSCI CCNGG 7 cut(s) 155, 351, 410, 563, 575, 921, 922
BstSLI GKGCMC 2 cut(s) 13, 536
BstUI CGCG 1 cut(s) 314
BstV1I GCAGC 3 cut(s) 610, 625, 688
BstXI CCANNNNNNTGG 1 cut(s) 595
BsuRI GGCC 8 cut(s) 11, 160, 486, 534, 587, 599, 709, 928
BtgI CCRYGG 1 cut(s) 642
BtsCI GGATG 5 cut(s) 23, 107, 454, 757, 825
BtsIMutI CAGTG 1 cut(s) 774
Cac8I GCNNGC 2 cut(s) 666, 857
CaiI CAGNNNCTG 1 cut(s) 656
CfoI GCGC 3 cut(s) 266, 316, 345
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 9 cut(s) 9, 10, 159, 328, 532, 533, 573, 707, 926
Cfr9I CCCGGG 1 cut(s) 922
CseI GACGC 1 cut(s) 569
Csp6I GTAC 4 cut(s) 32, 87, 713, 760
CviAII CATG 1 cut(s) 643
CviQI GTAC 4 cut(s) 32, 87, 713, 760
DdeI CTNAG 5 cut(s) 197, 357, 657, 700, 1068
DinI GGCGCC 1 cut(s) 344
DrdI GACNNNNNNGTC 1 cut(s) 383
DseDI GACNNNNNNGTC 1 cut(s) 383
EaeI YGGCCR 3 cut(s) 484, 585, 597
Eam1104I CTCTTC 3 cut(s) 239, 896, 1004
EarI CTCTTC 3 cut(s) 239, 896, 1004
EciI GGCGGA 2 cut(s) 103, 860
Eco130I CCWWGG 2 cut(s) 600, 642
Eco24I GRGCYC 2 cut(s) 13, 536
Eco31I GGTCTC 1 cut(s) 553
Eco47I GGWCC 2 cut(s) 328, 573
Eco57I CTGAAG 2 cut(s) 524, 920
Eco88I CYCGRG 1 cut(s) 922
EcoO109I RGGNCCY 4 cut(s) 9, 10, 532, 926
EcoRII CCWGG 2 cut(s) 155, 351
EcoT14I CCWWGG 2 cut(s) 600, 642
EcoT38I GRGCYC 2 cut(s) 13, 536
EgeI GGCGCC 1 cut(s) 344
EheI GGCGCC 1 cut(s) 344
ErhI CCWWGG 2 cut(s) 600, 642
Esp3I CGTCTC 1 cut(s) 437
FaeI CATG 1 cut(s) 646
FaiI YATR 6 cut(s) 6, 164, 436, 644, 863, 891
FalI AAGNNNNNCTT 6 cut(s) 218, 250, 383, 415, 663, 695
FaqI GGGAC 2 cut(s) 485, 586
FatI CATG 1 cut(s) 642
FauI CCCGC 2 cut(s) 256, 807
FblI GTMKAC 1 cut(s) 258
FokI GGATG 5 cut(s) 10, 94, 461, 764, 832
FriOI GRGCYC 2 cut(s) 13, 536
GlaI GCGC 3 cut(s) 265, 315, 344
GsuI CTGGAG 1 cut(s) 335
HaeII RGCGCY 2 cut(s) 267, 346
HaeIII GGCC 8 cut(s) 11, 160, 486, 534, 587, 599, 709, 928
HapII CCGG 5 cut(s) 71, 411, 564, 576, 923
HgaI GACGC 1 cut(s) 569
HhaI GCGC 3 cut(s) 266, 316, 345
Hin1I GRCGYC 4 cut(s) 255, 343, 453, 561
Hin1II CATG 1 cut(s) 646
Hin6I GCGC 3 cut(s) 264, 314, 343
HinP1I GCGC 3 cut(s) 264, 314, 343
HincII GTYRAC 3 cut(s) 259, 457, 522
HindII GTYRAC 3 cut(s) 259, 457, 522
HinfI GANTC 2 cut(s) 790, 850
HpaII CCGG 5 cut(s) 71, 411, 564, 576, 923
HphI GGTGA 1 cut(s) 120
Hpy166II GTNNAC 4 cut(s) 34, 259, 457, 522
Hpy188I TCNGA 4 cut(s) 77, 328, 468, 961
Hpy188III TCNNGA 2 cut(s) 388, 779
Hpy8I GTNNAC 4 cut(s) 34, 259, 457, 522
Hpy99I CGWCG 3 cut(s) 257, 260, 563
HpyAV CCTTC 6 cut(s) 385, 599, 727, 928, 939, 982
HpyCH4III ACNGT 4 cut(s) 46, 223, 499, 769
HpyCH4IV ACGT 3 cut(s) 30, 255, 453
HpyCH4V TGCA 2 cut(s) 650, 872
HpyF3I CTNAG 5 cut(s) 197, 357, 657, 700, 1068
HpySE526I ACGT 3 cut(s) 30, 255, 453
Hsp92I GRCGYC 4 cut(s) 255, 343, 453, 561
Hsp92II CATG 1 cut(s) 646
HspAI GCGC 3 cut(s) 264, 314, 343
KasI GGCGCC 1 cut(s) 342
LmnI GCTCC 1 cut(s) 57
Lsp1109I GCAGC 3 cut(s) 610, 625, 688
LweI GCATC 1 cut(s) 116
MaeII ACGT 3 cut(s) 30, 255, 453
MaeIII GTNAC 1 cut(s) 616
MbiI CCGCTC 1 cut(s) 421
MboII GAAGA 8 cut(s) 117, 226, 439, 442, 526, 913, 997, 1021
MhlI GDGCHC 2 cut(s) 13, 536
MlsI TGGCCA 3 cut(s) 486, 587, 599
MluCI AATT 2 cut(s) 722, 1031
MluNI TGGCCA 3 cut(s) 486, 587, 599
Mly113I GGCGCC 1 cut(s) 343
MmeI TCCRAC 3 cut(s) 51, 55, 79
Mox20I TGGCCA 3 cut(s) 486, 587, 599
MscI TGGCCA 3 cut(s) 486, 587, 599
MseI TTAA 3 cut(s) 48, 681, 686
Msp20I TGGCCA 3 cut(s) 486, 587, 599
MspA1I CMGCKG 1 cut(s) 638
MspCI CTTAAG 1 cut(s) 680
MspI CCGG 5 cut(s) 71, 411, 564, 576, 923
MspR9I CCNGG 7 cut(s) 157, 353, 412, 565, 577, 923, 924
MvaI CCWGG 2 cut(s) 157, 353
MvnI CGCG 1 cut(s) 314
NarI GGCGCC 1 cut(s) 343
NciI CCSGG 5 cut(s) 412, 565, 577, 923, 924
NcoI CCATGG 1 cut(s) 642
NlaIII CATG 1 cut(s) 646
NlaIV GGNNCC 8 cut(s) 10, 11, 12, 330, 344, 534, 574, 927
NmuCI GTSAC 1 cut(s) 616
NspV TTCGAA 2 cut(s) 726, 932
PfeI GAWTC 2 cut(s) 790, 850
PluTI GGCGCC 1 cut(s) 346
PsiI TTATAA 1 cut(s) 863
Psp6I CCWGG 2 cut(s) 155, 351
PspGI CCWGG 2 cut(s) 155, 351
PspN4I GGNNCC 8 cut(s) 10, 11, 12, 330, 344, 534, 574, 927
PspOMI GGGCCC 2 cut(s) 9, 532
PspPI GGNCC 9 cut(s) 9, 10, 159, 328, 532, 533, 573, 707, 926
PstNI CAGNNNCTG 1 cut(s) 656
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 4 cut(s) 33, 88, 714, 761
RsaNI GTAC 4 cut(s) 32, 87, 713, 760
SalI GTCGAC 1 cut(s) 257
SaqAI TTAA 3 cut(s) 48, 681, 686
Sau96I GGNCC 9 cut(s) 9, 10, 159, 328, 532, 533, 573, 707, 926
ScaI AGTACT 1 cut(s) 714
ScrFI CCNGG 7 cut(s) 157, 353, 412, 565, 577, 923, 924
SduI GDGCHC 2 cut(s) 13, 536
SfaNI GCATC 1 cut(s) 116
SfoI GGCGCC 1 cut(s) 344
SfuI TTCGAA 2 cut(s) 726, 932
SinI GGWCC 2 cut(s) 328, 573
SmaI CCCGGG 1 cut(s) 924
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
Sse9I AATT 2 cut(s) 722, 1031
SspDI GGCGCC 1 cut(s) 342
StyD4I CCNGG 7 cut(s) 155, 351, 410, 563, 575, 921, 922
StyI CCWWGG 2 cut(s) 600, 642
TaaI ACNGT 4 cut(s) 46, 223, 499, 769
TaiI ACGT 3 cut(s) 33, 258, 456
TaqI TCGA 5 cut(s) 258, 417, 726, 932, 1053
TaqII GACCGA 1 cut(s) 539
TasI AATT 2 cut(s) 722, 1031
TatI WGTACW 1 cut(s) 712
TauI GCSGC 9 cut(s) 278, 288, 291, 302, 311, 314, 348, 372, 375
TfiI GAWTC 2 cut(s) 790, 850
Tru1I TTAA 3 cut(s) 48, 681, 686
Tru9I TTAA 3 cut(s) 48, 681, 686
TscAI CASTG 1 cut(s) 774
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 3 cut(s) 623, 638, 676
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 3 cut(s) 527, 782, 828
TspGWI ACGGA 3 cut(s) 453, 461, 582
TspMI CCCGGG 1 cut(s) 922
TspRI CASTG 1 cut(s) 774
Vha464I CTTAAG 1 cut(s) 680
VpaK11BI GGWCC 2 cut(s) 328, 573
XapI RAATTY 1 cut(s) 722
XmaI CCCGGG 1 cut(s) 922
XmiI GTMKAC 1 cut(s) 258
ZraI GACGTC 2 cut(s) 256, 454
ZrmI AGTACT 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.