pycom06g15330

Wall-associated receptor kinase galacturonan-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0013565
Physical Location & Seq
Reverse (-)
19878966 .. 19880588
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1224 bp
ATGGACAAGCAAAGACGTTGGAACATAAAGCAACCCCATCGGAATCATTTCGTGCAATTTTATTGCCGTCCCAAGACCCAAAAGCAAACTAAAGCTTCTGCAGGATTTCAATTTTTCAAAAGAGCAAAACCCATTAACCATTCACCAAAAGATATTCTCAACACAAATCATCCAAGCAAGGTATCAATATCATCTGCGTTTTCCACTGTCACTCATATCACAAACCACACAGCTGACTCAAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCATCCATGAGTGGCTATAGTACTACTACTATGCTCATAATTCCCAGCTTCCTCCTCTGTCTTTTATTTTCTTCGTTCTTTCCATCCGGCTCTACCAACACATGCAGATCGTATTGCGGAAACCTCACCATAGATTACCCGTTCGCCGTCCGCTCCGGCTGCGGGCACCCGGGTTTTCGAGATCTCTTATACTGCATCAACGATGTGCTCATGTTTCACATAAGCTCGGGATCTTACAGGGTCTTGGACATAGACTACGCTTACCAAGCCCTCACGTTGCATGAACCTCACATGTCAACATGTGACAGCATAGTGCTAGGTGCCAAGGGCAATGGCTTCTCCGTCGAGCAATGGCGGGCTCCGTACATGAATCCGACCGCCGACAACGTGTTCATGCTGATCGGCTGCTCCGCTCAGTCGCCGCTCTTTCAAGGCTTTCCGGGGAAGCACTTGCCATGCAGAAACGTTTCGGGAATGAGTTGCGAGGAATACTATGGTTGTCCGGCGTGGGATATGTTGGGCCATAGGAGGGTGGGTTCCATGTTTGGTTCGGGTCCACCTGAGTGTTGTGCAGTGCCGTTTGAGGCCATCAAGGCCGTTAATCTCACCAAGCTTCAGTGTGAAGGGTATAGCAGTGCTTACAACCTGGCCCCGCTGAAGCTGGATGGGGCCCATGGGTGGTCGTATGGTATCCGAGTGAAGTACTCTGTTCAAGAAAACGATGAGTTTTGTAGAGCTTGTGAGGCTACCAGTGGCACGTGCGGGTACGGCGCTGATGGCATTAGGCAATTGTGTATGTGTGGGAGCTTCAATTCCACGTCAAATTGTGATTCTGTAAAATCAGCATCAAAAAGAACATACTCTATGGCAGAGAGTTATACATTCAGAGGATTGCTGGTGTGTCTACTAGCTTATATTACACAGAAACATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind

Protein Analysis

408

Amino Acids

45.03

Weight (kDa)

8.77

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 131 - 189 4.7e-13 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013565)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50290
fragaria_vesca FvH4_5g05500
malus_domestica MD06G1172100.v1.1 MD14G1178000.v1.1
prunus_persica Prupe.5G171500_v2.0.a1
pyrus_communis pycom06g15330 pycom14g14850
rosa_chinensis RchiOBHm_Chr7g0193341
rosa_laevigata RLG00000004278
rosa_multiflora Rmu_ssc0000092.1_g000009
rosa_roxburghii Rroxscaffold_3G00262200
rosa_rugosa Rorug07G0009000
rosa_samantha Rh7AG134800 Rh7AG135200 Rh7BG135500 Rh7CG138900 Rh7DG136900
rosa_wichuraiana Rw7G011520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 453, 608
AccBSI CCGCTC 3 cut(s) 441, 701, 712
AccI GTMKAC 1 cut(s) 1192
AciI CCGC 9 cut(s) 405, 439, 450, 643, 666, 699, 710, 941, 1050
AclI AACGTT 1 cut(s) 753
AclWI GGATC 1 cut(s) 526
AcuI CTGAAG 2 cut(s) 887, 965
AcvI CACGTG 1 cut(s) 1047
AfaI GTAC 4 cut(s) 310, 653, 992, 1055
AfiI CCNNNNNNNGG 3 cut(s) 450, 817, 966
AflIII ACRYGT 3 cut(s) 579, 587, 675
AgsI TTSAA 5 cut(s) 110, 118, 719, 1001, 1099
AjiI CACGTC 1 cut(s) 1107
AjnI CCWGG 1 cut(s) 933
AleI CACNNNNGTG 1 cut(s) 850
AloI GAACNNNNNNTCC 2 cut(s) 808, 840
AluBI AGCT 9 cut(s) 95, 233, 336, 513, 901, 949, 1025, 1095, 1199
AluI AGCT 9 cut(s) 95, 233, 336, 513, 901, 949, 1025, 1095, 1199
Alw21I GWGCWC 1 cut(s) 498
AlwI GGATC 1 cut(s) 526
Ama87I CYCGRG 2 cut(s) 457, 514
AoxI GGCC 5 cut(s) 808, 873, 882, 936, 957
ApaI GGGCCC 1 cut(s) 961
ApeKI GCWGC 2 cut(s) 447, 693
Asp700I GAANNNNTTC 2 cut(s) 47, 754
AspLEI GCGC 1 cut(s) 1061
AspS9I GGNCC 5 cut(s) 808, 842, 937, 957, 958
AsuC2I CCSGG 3 cut(s) 458, 459, 729
AsuHPI GGTGA 3 cut(s) 135, 406, 886
AvaI CYCGRG 2 cut(s) 457, 514
AvaII GGWCC 1 cut(s) 842
BaeGI GKGCMC 2 cut(s) 456, 961
BanI GGYRCC 2 cut(s) 453, 608
BanII GRGCYC 2 cut(s) 649, 961
BbrPI CACGTG 1 cut(s) 1047
Bbv12I GWGCWC 1 cut(s) 498
BbvI GCAGC 2 cut(s) 434, 680
BccI CCATC 5 cut(s) 45, 379, 884, 947, 1058
BceAI ACGGC 5 cut(s) 51, 419, 850, 869, 1072
BcgI CGANNNNNNTGC 2 cut(s) 20, 54
BciT130I CCWGG 1 cut(s) 935
BciVI GTATCC 1 cut(s) 989
BcnI CCSGG 3 cut(s) 458, 459, 729
BfaI CTAG 2 cut(s) 605, 1196
BfmI CTRYAG 2 cut(s) 99, 304
BfoI RGCGCY 1 cut(s) 1062
BfuI GTATCC 1 cut(s) 989
BglI GCCNNNNNGGC 1 cut(s) 881
BglII AGATCT 1 cut(s) 469
BisI GCNGC 3 cut(s) 448, 694, 710
BlsI GCNGC 3 cut(s) 449, 695, 711
BmcAI AGTACT 2 cut(s) 310, 992
Bme1390I CCNGG 4 cut(s) 458, 459, 729, 935
Bme18I GGWCC 1 cut(s) 842
BmeT110I CYCGRG 2 cut(s) 457, 514
BmgBI CACGTC 1 cut(s) 1107
BmgT120I GGNCC 5 cut(s) 808, 842, 937, 957, 958
BmiI GGNNCC 8 cut(s) 455, 610, 648, 826, 843, 939, 958, 959
BmrFI CCNGG 4 cut(s) 458, 459, 729, 935
BmsI GCATC 3 cut(s) 299, 492, 1142
BpuMI CCSGG 3 cut(s) 458, 459, 729
BsaAI YACGTR 1 cut(s) 1047
BsaJI CCNNGG 4 cut(s) 457, 612, 728, 961
BsaXI ACNNNNNCTCC 2 cut(s) 808, 838
Bsc4I CCNNNNNNNGG 3 cut(s) 450, 817, 966
Bse1I ACTGG 1 cut(s) 1038
Bse3DI GCAATG 2 cut(s) 625, 644
BseBI CCWGG 1 cut(s) 935
BseDI CCNNGG 4 cut(s) 457, 612, 728, 961
BseGI GGATG 4 cut(s) 169, 290, 371, 958
BseLI CCNNNNNNNGG 3 cut(s) 450, 817, 966
BseMI GCAATG 2 cut(s) 625, 644
BseMII CTCAG 2 cut(s) 716, 840
BseNI ACTGG 1 cut(s) 1038
BseRI GAGGAG 1 cut(s) 332
BseSI GKGCMC 2 cut(s) 456, 961
BseXI GCAGC 2 cut(s) 434, 680
BseYI CCCAGC 1 cut(s) 332
BsgI GTGCAG 1 cut(s) 879
Bsh1285I CGRYCG 1 cut(s) 666
BshFI GGCC 5 cut(s) 810, 875, 884, 938, 959
BshNI GGYRCC 2 cut(s) 453, 608
BsiEI CGRYCG 1 cut(s) 666
BsiHKAI GWGCWC 1 cut(s) 498
BsiHKCI CYCGRG 2 cut(s) 457, 514
BsiSI CCGG 5 cut(s) 375, 444, 458, 728, 791
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 3 cut(s) 450, 817, 966
BsmFI GGGAC 1 cut(s) 54
BsnI GGCC 5 cut(s) 810, 875, 884, 938, 959
BsoBI CYCGRG 2 cut(s) 457, 514
Bsp120I GGGCCC 1 cut(s) 957
Bsp1286I GDGCHC 4 cut(s) 456, 498, 649, 961
Bsp143I GATC 4 cut(s) 395, 469, 518, 687
Bsp19I CCATGG 1 cut(s) 961
BspACI CCGC 9 cut(s) 405, 439, 450, 643, 666, 699, 710, 941, 1050
BspANI GGCC 5 cut(s) 810, 875, 884, 938, 959
BspCNI CTCAG 2 cut(s) 715, 841
BspLI GGNNCC 8 cut(s) 455, 610, 648, 826, 843, 939, 958, 959
BspMAI CTGCAG 1 cut(s) 103
BspPI GGATC 1 cut(s) 526
BspT107I GGYRCC 2 cut(s) 453, 608
BsrBI CCGCTC 3 cut(s) 441, 701, 712
BsrDI GCAATG 2 cut(s) 625, 644
BsrI ACTGG 1 cut(s) 1038
BssECI CCNNGG 4 cut(s) 457, 612, 728, 961
BssMI GATC 4 cut(s) 395, 469, 518, 687
BssT1I CCWWGG 2 cut(s) 612, 961
Bst2UI CCWGG 1 cut(s) 935
Bst4CI ACNGT 1 cut(s) 208
BstBAI YACGTR 1 cut(s) 1047
BstC8I GCNNGC 2 cut(s) 452, 645
BstDEI CTNAG 2 cut(s) 702, 849
BstDSI CCRYGG 1 cut(s) 961
BstF5I GGATG 4 cut(s) 169, 290, 371, 958
BstH2I RGCGCY 1 cut(s) 1062
BstHHI GCGC 1 cut(s) 1061
BstKTI GATC 4 cut(s) 398, 472, 521, 690
BstMBI GATC 4 cut(s) 395, 469, 518, 687
BstMCI CGRYCG 1 cut(s) 666
BstMWI GCNNNNNNNGC 6 cut(s) 447, 554, 881, 1031, 1056, 1065
BstNI CCWGG 1 cut(s) 935
BstNSI RCATGY 3 cut(s) 393, 583, 591
BstSCI CCNGG 4 cut(s) 456, 457, 727, 933
BstSFI CTRYAG 2 cut(s) 99, 304
BstSLI GKGCMC 2 cut(s) 456, 961
BstV1I GCAGC 2 cut(s) 434, 680
BstX2I RGATCY 2 cut(s) 469, 518
BstYI RGATCY 2 cut(s) 469, 518
BsuI GTATCC 1 cut(s) 989
BsuRI GGCC 5 cut(s) 810, 875, 884, 938, 959
BtgI CCRYGG 1 cut(s) 961
BtrI CACGTC 1 cut(s) 1107
BtsCI GGATG 4 cut(s) 169, 290, 371, 958
BtsI GCAGTG 2 cut(s) 867, 928
BtsIMutI CAGTG 5 cut(s) 204, 867, 911, 928, 1045
Cac8I GCNNGC 2 cut(s) 452, 645
CfoI GCGC 1 cut(s) 1061
Cfr13I GGNCC 5 cut(s) 808, 842, 937, 957, 958
Cfr9I CCCGGG 1 cut(s) 457
Csp6I GTAC 4 cut(s) 309, 652, 991, 1054
CviQI GTAC 4 cut(s) 309, 652, 991, 1054
DdeI CTNAG 2 cut(s) 702, 849
DpnI GATC 4 cut(s) 397, 471, 520, 689
DpnII GATC 4 cut(s) 395, 469, 518, 687
Eco130I CCWWGG 2 cut(s) 612, 961
Eco24I GRGCYC 2 cut(s) 649, 961
Eco47I GGWCC 1 cut(s) 842
Eco57I CTGAAG 2 cut(s) 887, 965
Eco72I CACGTG 1 cut(s) 1047
Eco88I CYCGRG 2 cut(s) 457, 514
EcoO109I RGGNCCY 1 cut(s) 957
EcoRII CCWGG 1 cut(s) 933
EcoT14I CCWWGG 2 cut(s) 612, 961
EcoT38I GRGCYC 2 cut(s) 649, 961
ErhI CCWWGG 2 cut(s) 612, 961
FaqI GGGAC 1 cut(s) 54
FauI CCCGC 4 cut(s) 443, 636, 948, 1043
FblI GTMKAC 1 cut(s) 1192
Fnu4HI GCNGC 3 cut(s) 448, 694, 710
FokI GGATG 4 cut(s) 156, 277, 358, 965
FriOI GRGCYC 2 cut(s) 649, 961
Fsp4HI GCNGC 3 cut(s) 448, 694, 710
FspBI CTAG 2 cut(s) 605, 1196
GlaI GCGC 1 cut(s) 1060
GluI GCNGC 3 cut(s) 448, 694, 710
GsaI CCCAGC 1 cut(s) 336
HaeII RGCGCY 1 cut(s) 1062
HaeIII GGCC 5 cut(s) 810, 875, 884, 938, 959
HapII CCGG 5 cut(s) 375, 444, 458, 728, 791
HhaI GCGC 1 cut(s) 1061
Hin6I GCGC 1 cut(s) 1059
HinP1I GCGC 1 cut(s) 1059
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HindIII AAGCTT 2 cut(s) 93, 899
HinfI GANTC 4 cut(s) 43, 236, 658, 1118
HpaII CCGG 5 cut(s) 375, 444, 458, 728, 791
HphI GGTGA 3 cut(s) 135, 406, 886
Hpy166II GTNNAC 3 cut(s) 585, 845, 1193
Hpy188I TCNGA 4 cut(s) 42, 663, 983, 1175
Hpy188III TCNNGA 4 cut(s) 467, 516, 759, 1001
Hpy8I GTNNAC 3 cut(s) 585, 845, 1193
Hpy99I CGWCG 1 cut(s) 635
HpyAV CCTTC 1 cut(s) 905
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 6 cut(s) 16, 563, 675, 753, 1046, 1106
HpyCH4V TGCA 7 cut(s) 55, 101, 393, 483, 568, 747, 860
HpyF10VI GCNNNNNNNGC 6 cut(s) 447, 554, 881, 1031, 1056, 1065
HpyF3I CTNAG 2 cut(s) 702, 849
HpySE526I ACGT 6 cut(s) 16, 563, 675, 753, 1046, 1106
HspAI GCGC 1 cut(s) 1059
Kzo9I GATC 4 cut(s) 395, 469, 518, 687
LmnI GCTCC 4 cut(s) 446, 652, 701, 1092
Lsp1109I GCAGC 2 cut(s) 434, 680
LweI GCATC 3 cut(s) 299, 492, 1142
MaeI CTAG 2 cut(s) 605, 1196
MaeII ACGT 6 cut(s) 16, 563, 675, 753, 1046, 1106
MaeIII GTNAC 2 cut(s) 208, 590
MalI GATC 4 cut(s) 397, 471, 520, 689
MbiI CCGCTC 3 cut(s) 441, 701, 712
MboI GATC 4 cut(s) 395, 469, 518, 687
MboII GAAGA 1 cut(s) 351
MfeI CAATTG 1 cut(s) 1076
MflI RGATCY 2 cut(s) 469, 518
MhlI GDGCHC 4 cut(s) 456, 498, 649, 961
MluCI AATT 6 cut(s) 56, 110, 327, 1076, 1099, 1111
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 686
MroXI GAANNNNTTC 2 cut(s) 47, 754
MseI TTAA 2 cut(s) 135, 888
MslI CAYNNNNRTG 1 cut(s) 850
MspA1I CMGCKG 2 cut(s) 233, 943
MspI CCGG 5 cut(s) 375, 444, 458, 728, 791
MspR9I CCNGG 4 cut(s) 458, 459, 729, 935
MunI CAATTG 1 cut(s) 1076
MvaI CCWGG 1 cut(s) 935
MwoI GCNNNNNNNGC 6 cut(s) 447, 554, 881, 1031, 1056, 1065
NciI CCSGG 3 cut(s) 458, 459, 729
NcoI CCATGG 1 cut(s) 961
NdeII GATC 4 cut(s) 395, 469, 518, 687
NlaIV GGNNCC 8 cut(s) 455, 610, 648, 826, 843, 939, 958, 959
NmuCI GTSAC 2 cut(s) 208, 590
NspI RCATGY 3 cut(s) 393, 583, 591
OliI CACNNNNGTG 1 cut(s) 850
PciI ACATGT 2 cut(s) 579, 587
PdmI GAANNNNTTC 2 cut(s) 47, 754
PfeI GAWTC 3 cut(s) 43, 658, 1118
PkrI GCNGC 3 cut(s) 449, 695, 711
PleI GAGTC 1 cut(s) 230
PmaCI CACGTG 1 cut(s) 1047
PmlI CACGTG 1 cut(s) 1047
PpsI GAGTC 1 cut(s) 230
Ppu21I YACGTR 1 cut(s) 1047
PscI ACATGT 2 cut(s) 579, 587
Psp1406I AACGTT 1 cut(s) 753
Psp6I CCWGG 1 cut(s) 933
PspCI CACGTG 1 cut(s) 1047
PspFI CCCAGC 1 cut(s) 332
PspGI CCWGG 1 cut(s) 933
PspN4I GGNNCC 8 cut(s) 455, 610, 648, 826, 843, 939, 958, 959
PspOMI GGGCCC 1 cut(s) 957
PspPI GGNCC 5 cut(s) 808, 842, 937, 957, 958
PstI CTGCAG 1 cut(s) 103
PsuI RGATCY 2 cut(s) 469, 518
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 4 cut(s) 310, 653, 992, 1055
RsaNI GTAC 4 cut(s) 309, 652, 991, 1054
RseI CAYNNNNRTG 1 cut(s) 850
SaqAI TTAA 2 cut(s) 135, 888
SatI GCNGC 3 cut(s) 448, 694, 710
Sau3AI GATC 4 cut(s) 395, 469, 518, 687
Sau96I GGNCC 5 cut(s) 808, 842, 937, 957, 958
ScaI AGTACT 2 cut(s) 310, 992
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 4 cut(s) 458, 459, 729, 935
SduI GDGCHC 4 cut(s) 456, 498, 649, 961
SfaNI GCATC 3 cut(s) 299, 492, 1142
SfcI CTRYAG 2 cut(s) 99, 304
SfiI GGCCNNNNNGGCC 1 cut(s) 881
SinI GGWCC 1 cut(s) 842
SmaI CCCGGG 1 cut(s) 459
SmiMI CAYNNNNRTG 1 cut(s) 850
Sse9I AATT 6 cut(s) 56, 110, 327, 1076, 1099, 1111
SsiI CCGC 9 cut(s) 405, 439, 450, 643, 666, 699, 710, 941, 1050
SspMI CTAG 2 cut(s) 605, 1196
StyD4I CCNGG 4 cut(s) 456, 457, 727, 933
StyI CCWWGG 2 cut(s) 612, 961
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 6 cut(s) 19, 566, 678, 756, 1049, 1109
TaqI TCGA 2 cut(s) 466, 633
TasI AATT 6 cut(s) 56, 110, 327, 1076, 1099, 1111
TatI WGTACW 2 cut(s) 308, 990
TauI GCSGC 1 cut(s) 712
TfiI GAWTC 3 cut(s) 43, 658, 1118
Tru1I TTAA 2 cut(s) 135, 888
Tru9I TTAA 2 cut(s) 135, 888
TscAI CASTG 5 cut(s) 211, 867, 911, 928, 1045
TseFI GTSAC 2 cut(s) 208, 590
TseI GCWGC 2 cut(s) 447, 693
Tsp45I GTSAC 2 cut(s) 208, 590
TspDTI ATGAA 3 cut(s) 585, 670, 671
TspGWI ACGGA 2 cut(s) 619, 639
TspMI CCCGGG 1 cut(s) 457
TspRI CASTG 5 cut(s) 211, 867, 911, 928, 1045
VpaK11BI GGWCC 1 cut(s) 842
XceI RCATGY 3 cut(s) 393, 583, 591
XmaI CCCGGG 1 cut(s) 457
XmiI GTMKAC 1 cut(s) 1192
XmnI GAANNNNTTC 2 cut(s) 47, 754
XspI CTAG 2 cut(s) 605, 1196
ZrmI AGTACT 2 cut(s) 310, 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.