pycom06g16960

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0013934
Physical Location & Seq
Reverse (-)
21054555 .. 21055791
1237 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 501 bp
ATGGGATCTGGCACCGGCAGCTTCCTCAAAGTGCTTCTCAGGAACTTCGACGTTCTTGCTGGGCCTGTGGTTAGCCTTGTTTATCCACTATATGCATCGATTCGAGCGATAGAGACGCAGTCTCCGGCGGACGATCGCCAATGGCTGACTTACTGGATTCTGTATTCTATGATTACTCTGGTTGAACTCACCTTTGCCAAAGTCATTGAGTGGATTCCAATCTGGTCTTACGCTAAGCTGATTGCGACTTTTTGGTTGGTCCTCCCATACACGAGTGGCGCTGCGTATGTTTATGAACATTATATCCGACCTTTCTTTCTCAACCCACATAAAGTTAACATTTGGTATGTTCCGAGGAAGAAGGATGTATTGGGTAAGGCAAACCAAGACGACGTTCTGGCTGTTGCGGAGAAATACATTGCAGAGAATGGGATTGAAGCATTCGAGAAGATCATCCACAGGGCTGATAACAACCAGAGGGGCAGGGGGATCCGTCTTTGA

Protein Analysis

167

Amino Acids

19.11

Weight (kDa)

9.05

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 29 - 105 1.9e-28 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74520 AT1G74520
fragaria_vesca FvH4_5g15180
malus_domestica MD00G1186100.v1.1 MD06G1191500.v1.1 MD14G1197900.v1.1
prunus_persica Prupe.5G190000_v2.0.a1 Prupe.5G190000_v2.0.a1
pyrus_communis pycom06g16960
rosa_chinensis RchiOBHm_Chr7g0180981
rosa_multiflora Rmu_sc0004056.1_g000003
rosa_roxburghii Rroxscaffold_3G00272360
rosa_rugosa Rorug06G0438100 Rorug06G0438200
rosa_samantha Rh7CG040700 Rh7DG039100
rosa_wichuraiana Rw7G003250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 11
AciI CCGC 2 cut(s) 128, 407
AclWI GGATC 3 cut(s) 13, 484, 497
AgsI TTSAA 2 cut(s) 185, 437
AjuI GAANNNNNNNTTGG 4 cut(s) 353, 378, 385, 410
AloI GAACNNNNNNTCC 2 cut(s) 288, 320
AluBI AGCT 2 cut(s) 21, 238
AluI AGCT 2 cut(s) 21, 238
Alw26I GTCTC 2 cut(s) 107, 126
AlwI GGATC 3 cut(s) 13, 484, 497
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 2 cut(s) 18, 281
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 62, 259
AsuHPI GGTGA 1 cut(s) 181
AvaII GGWCC 1 cut(s) 259
BamHI GGATCC 1 cut(s) 489
BanI GGYRCC 1 cut(s) 11
BauI CACGAG 1 cut(s) 271
BbvI GCAGC 2 cut(s) 30, 268
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BcoDI GTCTC 2 cut(s) 107, 126
BfoI RGCGCY 1 cut(s) 282
BisI GCNGC 2 cut(s) 19, 282
BlpI GCTNAGC 1 cut(s) 234
BlsI GCNGC 2 cut(s) 20, 283
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 2 cut(s) 62, 259
BmiI GGNNCC 2 cut(s) 13, 491
BmsI GCATC 1 cut(s) 104
Bpu1102I GCTNAGC 1 cut(s) 234
Bsa29I ATCGAT 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 353
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 158
Bse3DI GCAATG 1 cut(s) 417
Bse8I GATNNNNATC 1 cut(s) 218
BseCI ATCGAT 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 2 cut(s) 370, 453
BseJI GATNNNNATC 1 cut(s) 218
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 158
BseXI GCAGC 2 cut(s) 30, 268
BseYI CCCAGC 1 cut(s) 59
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 1 cut(s) 64
BshNI GGYRCC 1 cut(s) 11
BshVI ATCGAT 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 136
BsiSI CCGG 2 cut(s) 15, 125
BsmAI GTCTC 2 cut(s) 107, 126
BsmBI CGTCTC 1 cut(s) 107
BsmI GAATGC 1 cut(s) 440
BsnI GGCC 1 cut(s) 64
Bsp143I GATC 4 cut(s) 5, 133, 450, 489
Bsp1720I GCTNAGC 1 cut(s) 234
BspACI CCGC 2 cut(s) 128, 407
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 51
BspDI ATCGAT 1 cut(s) 98
BspLI GGNNCC 2 cut(s) 13, 491
BspPI GGATC 3 cut(s) 13, 484, 497
BspT107I GGYRCC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 417
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 4 cut(s) 5, 133, 450, 489
BssSI CACGAG 1 cut(s) 271
Bst2BI CACGAG 1 cut(s) 271
BstDEI CTNAG 2 cut(s) 38, 234
BstF5I GGATG 2 cut(s) 370, 453
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 4 cut(s) 8, 136, 453, 492
BstMAI GTCTC 2 cut(s) 107, 126
BstMBI GATC 4 cut(s) 5, 133, 450, 489
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstV1I GCAGC 2 cut(s) 30, 268
BstX2I RGATCY 2 cut(s) 5, 489
BstYI RGATCY 2 cut(s) 5, 489
Bsu15I ATCGAT 1 cut(s) 98
BsuRI GGCC 1 cut(s) 64
BsuTUI ATCGAT 1 cut(s) 98
BtsCI GGATG 2 cut(s) 370, 453
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 62, 259
ClaI ATCGAT 1 cut(s) 98
CseI GACGC 1 cut(s) 124
CviJI RGCY 7 cut(s) 21, 64, 75, 145, 238, 401, 464
CviKI_1 RGCY 7 cut(s) 21, 64, 75, 145, 238, 401, 464
DdeI CTNAG 2 cut(s) 38, 234
DpnI GATC 4 cut(s) 7, 135, 452, 491
DpnII GATC 4 cut(s) 5, 133, 450, 489
EciI GGCGGA 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 259
EcoT22I ATGCAT 1 cut(s) 97
Esp3I CGTCTC 1 cut(s) 107
FaiI YATR 9 cut(s) 91, 93, 170, 268, 288, 294, 303, 330, 348
Fnu4HI GCNGC 2 cut(s) 19, 282
FokI GGATG 2 cut(s) 377, 440
Fsp4HI GCNGC 2 cut(s) 19, 282
GlaI GCGC 1 cut(s) 280
GluI GCNGC 2 cut(s) 19, 282
GsaI CCCAGC 1 cut(s) 63
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 1 cut(s) 64
HapII CCGG 2 cut(s) 15, 125
HgaI GACGC 1 cut(s) 124
HhaI GCGC 1 cut(s) 281
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 3 cut(s) 100, 157, 214
HpaI GTTAAC 1 cut(s) 337
HpaII CCGG 2 cut(s) 15, 125
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 2 cut(s) 308, 354
Hpy188III TCNNGA 2 cut(s) 40, 445
Hpy8I GTNNAC 1 cut(s) 337
Hpy99I CGWCG 2 cut(s) 53, 395
HpyAV CCTTC 1 cut(s) 355
HpyCH4IV ACGT 2 cut(s) 51, 393
HpyCH4V TGCA 2 cut(s) 95, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 2 cut(s) 38, 234
HpySE526I ACGT 2 cut(s) 51, 393
HspAI GCGC 1 cut(s) 279
KspAI GTTAAC 1 cut(s) 337
Kzo9I GATC 4 cut(s) 5, 133, 450, 489
Lsp1109I GCAGC 2 cut(s) 30, 268
LweI GCATC 1 cut(s) 104
MaeII ACGT 2 cut(s) 51, 393
MalI GATC 4 cut(s) 7, 135, 452, 491
MboI GATC 4 cut(s) 5, 133, 450, 489
MboII GAAGA 2 cut(s) 370, 460
MflI RGATCY 2 cut(s) 5, 489
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 4 cut(s) 35, 272, 348, 471
Mph1103I ATGCAT 1 cut(s) 97
MseI TTAA 1 cut(s) 336
MspI CCGG 2 cut(s) 15, 125
Mva1269I GAATGC 1 cut(s) 440
MwoI GCNNNNNNNGC 1 cut(s) 18
NdeII GATC 4 cut(s) 5, 133, 450, 489
NlaIV GGNNCC 2 cut(s) 13, 491
NsiI ATGCAT 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PctI GAATGC 1 cut(s) 440
PfeI GAWTC 3 cut(s) 100, 157, 214
PflFI GACNNNGTC 1 cut(s) 118
PkrI GCNGC 2 cut(s) 20, 283
Ple19I CGATCG 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 59
PspN4I GGNNCC 2 cut(s) 13, 491
PspPI GGNCC 2 cut(s) 62, 259
PsuI RGATCY 2 cut(s) 5, 489
PsyI GACNNNGTC 1 cut(s) 118
PvuI CGATCG 1 cut(s) 136
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 19, 282
Sau3AI GATC 4 cut(s) 5, 133, 450, 489
Sau96I GGNCC 2 cut(s) 62, 259
SetI ASST 6 cut(s) 23, 54, 194, 240, 313, 396
SfaNI GCATC 1 cut(s) 104
SinI GGWCC 1 cut(s) 259
SsiI CCGC 2 cut(s) 128, 407
TaiI ACGT 2 cut(s) 54, 396
TaqI TCGA 4 cut(s) 48, 98, 103, 444
TfiI GAWTC 3 cut(s) 100, 157, 214
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseI GCWGC 2 cut(s) 18, 281
TspDTI ATGAA 1 cut(s) 309
TspGWI ACGGA 1 cut(s) 482
Tth111I GACNNNGTC 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 259
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.