pycom06g17030

Protein PHYTOCHROME KINASE SUBSTRATE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0015881
Physical Location & Seq
Reverse (-)
21106923 .. 21107810
888 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 888 bp
ATGGAAGGAGACGCCAACAACGGTACTCGTAGTCAGGATGCTTCGTTTTCTTCTCACCTCAGAAAAGCAGGAGGTACCTTTGTAGTCAAGCTTGCAGGATCAGTTCATATTCCGAATCCCCCTCCTGCCACGAAGGCTGAGGGTGAAACCAGCGTCTTTGGTGCGGAGAAATATTTCAGCATGATGCTGGAAGATGACGGTCCACGACTTGTGGACTATGACACAAGCAAATTCGGGCAAAAGAAGAAAGAAAATAGGGGTGGTCAGCAGCACAAGCAACCAACGAGCAGGCCAGGAACTCCTAGTACTTGTTCTGAAGCGAGTTGGAACAGCAAAAGCGGCTTGTTATCTTCGATGAGAACCCCGTCTCAGAGCAAGAAGAAAAAGGTTAATGGAAAAATCAATATCTTTTCGAGTTTTAGCTGCAATGGATCTTGCTCAGATAAGAAATCCGTATCTGTTCATGAGATGAATGCTGGTCATGGAGGTCGCGGCGATAAAGATTTTAGGAAGCAAAACGTTGGGAATATTGATCACAATCCTGCTAAGCAGCCTCAACCAAGATTTAAGGCAAGAGATGAGGTGTACTACTCCAGCTTTGAAAGGTCAAACAAGGAAGAGCATATCGCATTGGCAAATTTGAACTCCGGTGCGCAGAAATTGGCAGGTAAATCACGGTTGGAAGAGAAGACAATGAAAGAACAAGAAGGTCCCCAGAAATTGCTCGAGGTGTTTGGATCCCAAAGGATGAAGGAAGACAATGTCGCAATAAATTCTGAGAGGAGATTGTCCATGCTAACTTCGGATGCCATTCCAAAAGCTCCAGTGATGAATGAAGATGCCGAGAGTGATGCTAGTTCGGATTTGTTCGAGATAGAGAGCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

296

Amino Acids

32.34

Weight (kDa)

8.94

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18810
fragaria_vesca FvH4_5g15090
malus_domestica MD06G1192200.v1.1 MD14G1198800.v1.1
prunus_persica Prupe.5G191900_v2.0.a1
pyrus_communis pycom06g17030
rosa_chinensis RchiOBHm_Chr7g0181121
rosa_laevigata RLG00000005212
rosa_roxburghii Rroxscaffold_3G00272260
rosa_rugosa Rorug06G0438700
rosa_samantha Rh7AG040500 Rh7BG039900 Rh7CG041900 Rh7DG040300
rosa_wichuraiana Rw7G003340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 654
Acc36I ACCTGC 1 cut(s) 656
Acc65I GGTACC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 74
AccII CGCG 1 cut(s) 492
AciI CCGC 3 cut(s) 164, 339, 492
AclI AACGTT 1 cut(s) 519
AclWI GGATC 4 cut(s) 106, 439, 732, 745
AcsI RAATTY 3 cut(s) 230, 637, 772
AcuI CTGAAG 1 cut(s) 336
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 4 cut(s) 25, 76, 307, 587
AgsI TTSAA 2 cut(s) 602, 643
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 4 cut(s) 91, 423, 597, 821
AluI AGCT 4 cut(s) 91, 423, 597, 821
Alw26I GTCTC 2 cut(s) 3, 372
AlwI GGATC 4 cut(s) 106, 439, 732, 745
Ama87I CYCGRG 1 cut(s) 725
AoxI GGCC 1 cut(s) 290
ApeKI GCWGC 3 cut(s) 268, 423, 550
ApoI RAATTY 3 cut(s) 230, 637, 772
Asp700I GAANNNNTTC 1 cut(s) 173
Asp718I GGTACC 1 cut(s) 74
AspLEI GCGC 1 cut(s) 655
AspS9I GGNCC 2 cut(s) 200, 710
AsuHPI GGTGA 2 cut(s) 47, 155
AvaI CYCGRG 1 cut(s) 725
AvaII GGWCC 2 cut(s) 200, 710
BaeI ACNNNNGTAYC 2 cut(s) 66, 99
BamHI GGATCC 1 cut(s) 737
BanI GGYRCC 1 cut(s) 74
BbsI GAAGAC 2 cut(s) 695, 762
BbvCI CCTCAGC 1 cut(s) 138
BbvI GCAGC 3 cut(s) 280, 410, 562
BcgI CGANNNNNNTGC 2 cut(s) 833, 867
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 1 cut(s) 532
BcoDI GTCTC 2 cut(s) 3, 372
BfaI CTAG 2 cut(s) 303, 855
BfmI CTRYAG 1 cut(s) 884
BfuAI ACCTGC 1 cut(s) 656
BglI GCCNNNNNGGC 1 cut(s) 134
BisI GCNGC 5 cut(s) 269, 340, 424, 493, 551
BlpI GCTNAGC 1 cut(s) 546
BlsI GCNGC 5 cut(s) 270, 341, 425, 494, 552
BmcAI AGTACT 1 cut(s) 307
Bme1390I CCNGG 1 cut(s) 294
Bme18I GGWCC 2 cut(s) 200, 710
BmeT110I CYCGRG 1 cut(s) 725
BmgT120I GGNCC 2 cut(s) 200, 710
BmiI GGNNCC 3 cut(s) 76, 712, 739
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 5 cut(s) 28, 174, 796, 829, 841
BpiI GAAGAC 2 cut(s) 695, 762
BpmI CTGGAG 2 cut(s) 577, 807
Bpu10I CCTNAGC 1 cut(s) 138
Bpu1102I GCTNAGC 1 cut(s) 546
BsaBI GATNNNNATC 1 cut(s) 537
BsaHI GRCGYC 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 647
Bse1I ACTGG 1 cut(s) 824
Bse3DI GCAATG 1 cut(s) 433
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 1 cut(s) 294
BseGI GGATG 3 cut(s) 43, 753, 811
BseJI GATNNNNATC 1 cut(s) 537
BseMI GCAATG 1 cut(s) 433
BseMII CTCAG 5 cut(s) 73, 129, 383, 453, 768
BseNI ACTGG 1 cut(s) 824
BseRI GAGGAG 1 cut(s) 796
BseXI GCAGC 3 cut(s) 280, 410, 562
Bsh1236I CGCG 1 cut(s) 492
BshFI GGCC 1 cut(s) 292
BshNI GGYRCC 1 cut(s) 74
BsiHKCI CYCGRG 1 cut(s) 725
BsiSI CCGG 1 cut(s) 648
BslFI GGGAC 1 cut(s) 696
BsmAI GTCTC 2 cut(s) 3, 372
BsmBI CGTCTC 2 cut(s) 3, 372
BsmFI GGGAC 1 cut(s) 696
BsmI GAATGC 1 cut(s) 478
BsnI GGCC 1 cut(s) 292
BsoBI CYCGRG 1 cut(s) 725
Bsp143I GATC 4 cut(s) 98, 431, 532, 737
Bsp1720I GCTNAGC 1 cut(s) 546
BspACI CCGC 3 cut(s) 164, 339, 492
BspANI GGCC 1 cut(s) 292
BspCNI CTCAG 5 cut(s) 72, 130, 382, 452, 769
BspFNI CGCG 1 cut(s) 492
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 3 cut(s) 76, 712, 739
BspMI ACCTGC 1 cut(s) 656
BspPI GGATC 4 cut(s) 106, 439, 732, 745
BspQI GCTCTTC 1 cut(s) 612
BspT107I GGYRCC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 433
BsrI ACTGG 1 cut(s) 824
BssMI GATC 4 cut(s) 98, 431, 532, 737
BssNI GRCGYC 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 3 cut(s) 23, 200, 678
Bst6I CTCTTC 2 cut(s) 612, 678
BstACI GRCGYC 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 93, 290
BstDEI CTNAG 6 cut(s) 59, 138, 369, 439, 546, 777
BstF5I GGATG 3 cut(s) 43, 753, 811
BstFNI CGCG 1 cut(s) 492
BstHHI GCGC 1 cut(s) 655
BstKTI GATC 4 cut(s) 101, 434, 535, 740
BstMAI GTCTC 2 cut(s) 3, 372
BstMBI GATC 4 cut(s) 98, 431, 532, 737
BstMWI GCNNNNNNNGC 3 cut(s) 134, 274, 339
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 292
BstSFI CTRYAG 1 cut(s) 884
BstUI CGCG 1 cut(s) 492
BstV1I GCAGC 3 cut(s) 280, 410, 562
BstV2I GAAGAC 2 cut(s) 695, 762
BstX2I RGATCY 2 cut(s) 431, 737
BstYI RGATCY 2 cut(s) 431, 737
BsuRI GGCC 1 cut(s) 292
BtsCI GGATG 3 cut(s) 43, 753, 811
BtsIMutI CAGTG 1 cut(s) 831
BveI ACCTGC 1 cut(s) 656
Cac8I GCNNGC 2 cut(s) 93, 290
CciI TCATGA 1 cut(s) 463
CfoI GCGC 1 cut(s) 655
Cfr13I GGNCC 2 cut(s) 200, 710
CseI GACGC 2 cut(s) 20, 142
Csp6I GTAC 4 cut(s) 24, 75, 306, 586
CviAII CATG 4 cut(s) 181, 464, 482, 793
CviJI RGCY 9 cut(s) 91, 137, 292, 342, 423, 553, 597, 821, 882
CviKI_1 RGCY 9 cut(s) 91, 137, 292, 342, 423, 553, 597, 821, 882
CviQI GTAC 4 cut(s) 24, 75, 306, 586
DdeI CTNAG 6 cut(s) 59, 138, 369, 439, 546, 777
DpnI GATC 4 cut(s) 100, 433, 534, 739
DpnII GATC 4 cut(s) 98, 431, 532, 737
Eam1104I CTCTTC 2 cut(s) 612, 678
EarI CTCTTC 2 cut(s) 612, 678
Eco47I GGWCC 2 cut(s) 200, 710
Eco57I CTGAAG 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 725
EcoO109I RGGNCCY 1 cut(s) 710
EcoRII CCWGG 1 cut(s) 292
Esp3I CGTCTC 2 cut(s) 3, 372
FaeI CATG 4 cut(s) 184, 467, 485, 796
FaiI YATR 8 cut(s) 108, 182, 219, 465, 483, 624, 794, 886
FaqI GGGAC 1 cut(s) 696
FatI CATG 4 cut(s) 180, 463, 481, 792
FbaI TGATCA 1 cut(s) 532
Fnu4HI GCNGC 5 cut(s) 269, 340, 424, 493, 551
FokI GGATG 3 cut(s) 50, 760, 818
Fsp4HI GCNGC 5 cut(s) 269, 340, 424, 493, 551
FspBI CTAG 2 cut(s) 303, 855
FspI TGCGCA 1 cut(s) 654
GlaI GCGC 1 cut(s) 654
GluI GCNGC 5 cut(s) 269, 340, 424, 493, 551
GsuI CTGGAG 2 cut(s) 577, 807
HaeIII GGCC 1 cut(s) 292
HapII CCGG 1 cut(s) 648
HgaI GACGC 2 cut(s) 20, 142
HhaI GCGC 1 cut(s) 655
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 4 cut(s) 184, 467, 485, 796
Hin6I GCGC 1 cut(s) 653
HinP1I GCGC 1 cut(s) 653
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 1 cut(s) 115
HpaII CCGG 1 cut(s) 648
HphI GGTGA 2 cut(s) 47, 155
Hpy166II GTNNAC 3 cut(s) 203, 214, 586
Hpy188I TCNGA 8 cut(s) 62, 114, 316, 372, 442, 778, 805, 862
Hpy188III TCNNGA 3 cut(s) 35, 464, 871
Hpy8I GTNNAC 3 cut(s) 203, 214, 586
HpyAV CCTTC 3 cut(s) 127, 701, 745
HpyCH4III ACNGT 3 cut(s) 23, 200, 678
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 2 cut(s) 95, 426
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 274, 339
HpyF3I CTNAG 6 cut(s) 59, 138, 369, 439, 546, 777
HpySE526I ACGT 1 cut(s) 519
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 4 cut(s) 184, 467, 485, 796
HspAI GCGC 1 cut(s) 653
KpnI GGTACC 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 532
Kzo9I GATC 4 cut(s) 98, 431, 532, 737
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 1 cut(s) 826
Lsp1109I GCAGC 3 cut(s) 280, 410, 562
LweI GCATC 5 cut(s) 28, 174, 796, 829, 841
MaeI CTAG 2 cut(s) 303, 855
MaeII ACGT 1 cut(s) 519
MalI GATC 4 cut(s) 100, 433, 534, 739
MboI GATC 4 cut(s) 98, 431, 532, 737
MflI RGATCY 2 cut(s) 431, 737
MluCI AATT 5 cut(s) 230, 637, 659, 719, 772
MmeI TCCRAC 2 cut(s) 305, 660
MnlI CCTC 9 cut(s) 65, 68, 132, 133, 479, 564, 574, 721, 774
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 2 cut(s) 390, 567
MspI CCGG 1 cut(s) 648
MspR9I CCNGG 1 cut(s) 294
Mva1269I GAATGC 1 cut(s) 478
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 3 cut(s) 134, 274, 339
NdeII GATC 4 cut(s) 98, 431, 532, 737
NlaIII CATG 4 cut(s) 184, 467, 485, 796
NlaIV GGNNCC 3 cut(s) 76, 712, 739
NmeAIII GCCGAG 1 cut(s) 868
NsbI TGCGCA 1 cut(s) 654
PaeR7I CTCGAG 1 cut(s) 725
PagI TCATGA 1 cut(s) 463
PciSI GCTCTTC 1 cut(s) 612
PctI GAATGC 1 cut(s) 478
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 115
PflFI GACNNNGTC 1 cut(s) 761
PkrI GCNGC 5 cut(s) 270, 341, 425, 494, 552
PpuMI RGGWCCY 1 cut(s) 710
Psp1406I AACGTT 1 cut(s) 519
Psp5II RGGWCCY 1 cut(s) 710
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 3 cut(s) 76, 712, 739
PspPI GGNCC 2 cut(s) 200, 710
PspPPI RGGWCCY 1 cut(s) 710
PspXI VCTCGAGB 1 cut(s) 725
PsrI GAACNNNNNNTAC 2 cut(s) 289, 321
PsuI RGATCY 2 cut(s) 431, 737
PsyI GACNNNGTC 1 cut(s) 761
RsaI GTAC 4 cut(s) 25, 76, 307, 587
RsaNI GTAC 4 cut(s) 24, 75, 306, 586
SapI GCTCTTC 1 cut(s) 612
SaqAI TTAA 2 cut(s) 390, 567
SatI GCNGC 5 cut(s) 269, 340, 424, 493, 551
Sau3AI GATC 4 cut(s) 98, 431, 532, 737
Sau96I GGNCC 2 cut(s) 200, 710
ScaI AGTACT 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 294
SfaNI GCATC 5 cut(s) 28, 174, 796, 829, 841
SfcI CTRYAG 1 cut(s) 884
Sfr274I CTCGAG 1 cut(s) 725
SinI GGWCC 2 cut(s) 200, 710
SlaI CTCGAG 1 cut(s) 725
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
Sse9I AATT 5 cut(s) 230, 637, 659, 719, 772
SsiI CCGC 3 cut(s) 164, 339, 492
SspI AATATT 2 cut(s) 173, 529
SspMI CTAG 2 cut(s) 303, 855
StyD4I CCNGG 1 cut(s) 292
TaaI ACNGT 3 cut(s) 23, 200, 678
TaiI ACGT 1 cut(s) 522
TaqI TCGA 4 cut(s) 353, 413, 726, 870
TasI AATT 5 cut(s) 230, 637, 659, 719, 772
TatI WGTACW 2 cut(s) 305, 585
TauI GCSGC 2 cut(s) 342, 495
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 2 cut(s) 390, 567
Tru9I TTAA 2 cut(s) 390, 567
TscAI CASTG 1 cut(s) 831
TseI GCWGC 3 cut(s) 268, 423, 550
TspDTI ATGAA 7 cut(s) 95, 452, 485, 710, 764, 845, 849
TspGWI ACGGA 1 cut(s) 442
TspRI CASTG 1 cut(s) 831
Tth111I GACNNNGTC 1 cut(s) 761
VpaK11BI GGWCC 2 cut(s) 200, 710
XapI RAATTY 3 cut(s) 230, 637, 772
XhoI CTCGAG 1 cut(s) 725
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 2 cut(s) 303, 855
ZrmI AGTACT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.