pycom06g17310

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0017728
Physical Location & Seq
Reverse (-)
21292956 .. 21294323
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g17310.1

Sequence Viewer

Length: 1368 bp
ATGCACGATGCCATATTTCAAAAGGTGCACAGGGTTATGTCCCTTTTCAAGCAATGCACCACCACGAAACATGTAAAGCAAATCCATGGCCACATAATCCACAAAGGGCTTGATCAAAACGTCTTTGTTCTTGGCAAGATCGTCTCTTTCTGCGCGGTTTCGGACTGCAGAGACATGGACTATGCCGTCTCTGTTTTCAGAAGCGTTGAAAGCCCAGATGGGTTTTTGTGGAACACAATGATCAGAGGGTTTGGGAAGACCAGGAAGCCTGAAAGGGCATTTGAGTTTTATAAGAGAATGCAGGAGAATGGAAAGGTGGCTGATAATTTCACACTTTCCTTCTTGCTCAAGGTTTGTGGGCAATTGGGTTCTTACGTTTTGGGGAAACAGATGCATTGTGCTGCTCTGAAGCATGGGTTGGAGTCTCATGTCTTTGTAAGGAACACTCTCATTCATATGTATGGGATGTTGAAGGATGACAAAACTGCGTTCAATCTGTTTGATGAAATGCCTCAACCAGATTTAGTGGCTTGGAATACTATCATTGATAGTTATGTCAGTTGCGGAAAGTGTAAGGAAGCACTTGACTTGTTTTTACGGATGGTAAACAGTGGCACAGAACCTGATGACGCCACGGTGGTTGTGACCCTCTCGGCTTGCTCTACATTGGGTGCATTAGATTTTGGGAGGAGAGTTCATTCTTTTATTAATCGTTTGAATCTTAGTAGCAGTATGATGGTGACTAATTCGCTTATTGACATGTATGCAAAGTGCGGAGCTTTTGAAGAAGCATATGAGACGTTTTGTAAGATGAAGGGGAAGAACATAGTGTCGTGGAATACGATGATTCTGGGGCTTGCAACGCATGGGCGTGCAGACGATGCGTTGGAATTGTTCTCGAAGATGTTGAAGGAAAAGCTTGAGATGCCGGATGAAGTAACTTTCTTGGGAGTTTTGTTTGCCTGTAGCCATGGAGGGATGGTTGATGAAGGAAGAAGGTATTTTGATGTATTGAGCAAAGAGTATCATATCAAACCAACAATGAAGCACTACGGATGCATGGTGGATATGTTGGGGCGAGCTGGATGCATGGAGGAGGCTTACAGGTTGATAAAGAGCATGCCGATGGAGTGTAATGCCGTTATATGGAGGACATTGTTGGGAGCGTGTCGGCTGCACGGTGATATTGTGCTCGGAGAGAAGGTGAGGGGTCATCTTTTGGAGCTGGAACCAGATCACAGCAGCGACTACGTTCTTCTATCGAACATGTACGCAAGTTCAGGCGAATGGAATGAAGTTATACGAGTGAGAAAATCAATGATTGACAGGGGAGTTCAAAAACCAGAGCCTGGTAATAGCCTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

456

Amino Acids

51.42

Weight (kDa)

7.57

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 72 - 119 1.6e-09 PPR repeat family
PPR PF01535 76 - 104 9.1e-08 PPR repeat
PPR_2 PF13041 173 - 221 2.6e-11 PPR repeat family
PPR PF01535 176 - 205 1.1e-07 PPR repeat
PPR PF01535 249 - 276 7.4e-06 PPR repeat
PPR_2 PF13041 274 - 322 1.2e-09 PPR repeat family
PPR PF01535 277 - 305 6.1e-07 PPR repeat
E_motif PF20431 393 - 454 1.3e-14 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017728)

Species Orthologous Gene IDs
malus_domestica MD06G1195900.v1.1
prunus_persica Prupe.5G195700_v2.0.a1
pyrus_communis pycom06g17310
rosa_chinensis RchiOBHm_Chr7g0181731
rosa_laevigata RLG00000005173
rosa_multiflora Rmu_sc0000988.1_g000008
rosa_roxburghii Rroxscaffold_3G00271770
rosa_rugosa Rorug06G0443000
rosa_samantha Rh7AG045600 Rh7BG044800 Rh7CG046300
rosa_wichuraiana Rw7G003800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
AasI GACNNNNNNGTC 1 cut(s) 185
AccB7I CCANNNNNTGG 1 cut(s) 1349
AccII CGCG 1 cut(s) 155
AciI CCGC 3 cut(s) 155, 564, 774
AcoI YGGCCR 1 cut(s) 88
AcuI CTGAAG 1 cut(s) 428
AcyI GRCGYC 1 cut(s) 630
AfaI GTAC 1 cut(s) 1271
AfiI CCNNNNNNNGG 2 cut(s) 1146, 1349
AflIII ACRYGT 3 cut(s) 70, 759, 1266
AgsI TTSAA 9 cut(s) 20, 49, 209, 472, 493, 718, 785, 910, 1337
AjnI CCWGG 3 cut(s) 260, 1348, 1359
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AluBI AGCT 4 cut(s) 779, 919, 1082, 1225
AluI AGCT 4 cut(s) 779, 919, 1082, 1225
Alw21I GWGCWC 2 cut(s) 30, 1194
Alw26I GTCTC 5 cut(s) 148, 165, 193, 429, 791
Alw44I GTGCAC 1 cut(s) 26
AlwNI CAGNNNCTG 2 cut(s) 623, 1349
AoxI GGCC 1 cut(s) 88
ApaLI GTGCAC 1 cut(s) 26
ApeKI GCWGC 3 cut(s) 401, 1174, 1242
AseI ATTAAT 1 cut(s) 708
AspLEI GCGC 1 cut(s) 155
AsuHPI GGTGA 3 cut(s) 751, 1193, 1216
BaeGI GKGCMC 1 cut(s) 30
BalI TGGCCA 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 263
Bbv12I GWGCWC 2 cut(s) 30, 1194
BbvI GCAGC 3 cut(s) 388, 1161, 1254
BccI CCATC 5 cut(s) 212, 595, 730, 973, 1120
BceAI ACGGC 2 cut(s) 170, 1124
BcgI CGANNNNNNTGC 2 cut(s) 1068, 1102
BciT130I CCWGG 3 cut(s) 262, 1350, 1361
BclI TGATCA 2 cut(s) 112, 240
BcoDI GTCTC 5 cut(s) 148, 165, 193, 429, 791
BfmI CTRYAG 2 cut(s) 166, 964
BisI GCNGC 3 cut(s) 402, 1175, 1243
BlsI GCNGC 3 cut(s) 403, 1176, 1244
Bme1390I CCNGG 3 cut(s) 262, 1350, 1361
BmiI GGNNCC 1 cut(s) 1230
BmrFI CCNGG 3 cut(s) 262, 1350, 1361
BmsI GCATC 5 cut(s) 381, 871, 915, 1046, 1076
BpiI GAAGAC 1 cut(s) 263
BpuEI CTTGAG 2 cut(s) 332, 941
BsaHI GRCGYC 1 cut(s) 630
BsaJI CCNNGG 3 cut(s) 85, 633, 970
BsaXI ACNNNNNCTCC 4 cut(s) 966, 996, 1188, 1218
Bsc4I CCNNNNNNNGG 2 cut(s) 1146, 1349
Bse3DI GCAATG 1 cut(s) 59
BseBI CCWGG 3 cut(s) 262, 1350, 1361
BseDI CCNNGG 3 cut(s) 85, 633, 970
BseGI GGATG 7 cut(s) 471, 481, 606, 937, 984, 1061, 1091
BseLI CCNNNNNNNGG 2 cut(s) 1146, 1349
BseMI GCAATG 1 cut(s) 59
BseRI GAGGAG 2 cut(s) 703, 1109
BseSI GKGCMC 1 cut(s) 30
BseXI GCAGC 3 cut(s) 388, 1161, 1254
BsgI GTGCAG 2 cut(s) 894, 1160
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 30, 1194
BsiSI CCGG 1 cut(s) 929
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 1146, 1349
BsmAI GTCTC 5 cut(s) 148, 165, 193, 429, 791
BsmBI CGTCTC 3 cut(s) 148, 193, 791
BsmFI GGGAC 1 cut(s) 25
BsmI GAATGC 1 cut(s) 303
BsnI GGCC 1 cut(s) 90
Bsp1286I GDGCHC 2 cut(s) 30, 1194
Bsp143I GATC 4 cut(s) 112, 138, 240, 1234
Bsp19I CCATGG 2 cut(s) 85, 970
BspACI CCGC 3 cut(s) 155, 564, 774
BspANI GGCC 1 cut(s) 90
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 1230
BspMAI CTGCAG 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 59
BssECI CCNNGG 3 cut(s) 85, 633, 970
BssMI GATC 4 cut(s) 112, 138, 240, 1234
BssNI GRCGYC 1 cut(s) 630
BssT1I CCWWGG 2 cut(s) 85, 970
Bst2UI CCWGG 3 cut(s) 262, 1350, 1361
Bst4CI ACNGT 3 cut(s) 611, 637, 1181
BstACI GRCGYC 1 cut(s) 630
BstAPI GCANNNNNTGC 1 cut(s) 881
BstC8I GCNNGC 5 cut(s) 658, 858, 873, 1080, 1121
BstDEI CTNAG 1 cut(s) 722
BstDSI CCRYGG 3 cut(s) 85, 633, 970
BstF5I GGATG 7 cut(s) 471, 481, 606, 937, 984, 1061, 1091
BstFNI CGCG 1 cut(s) 155
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 4 cut(s) 115, 141, 243, 1237
BstMAI GTCTC 5 cut(s) 148, 165, 193, 429, 791
BstMBI GATC 4 cut(s) 112, 138, 240, 1234
BstMWI GCNNNNNNNGC 4 cut(s) 210, 862, 881, 925
BstNI CCWGG 3 cut(s) 262, 1350, 1361
BstNSI RCATGY 4 cut(s) 74, 763, 1123, 1270
BstSCI CCNGG 3 cut(s) 260, 1348, 1359
BstSFI CTRYAG 2 cut(s) 166, 964
BstSLI GKGCMC 1 cut(s) 30
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 3 cut(s) 388, 1161, 1254
BstV2I GAAGAC 1 cut(s) 263
BsuRI GGCC 1 cut(s) 90
BtgI CCRYGG 3 cut(s) 85, 633, 970
BtsCI GGATG 7 cut(s) 471, 481, 606, 937, 984, 1061, 1091
BtsIMutI CAGTG 1 cut(s) 616
Cac8I GCNNGC 5 cut(s) 658, 858, 873, 1080, 1121
CaiI CAGNNNCTG 2 cut(s) 623, 1349
CfoI GCGC 1 cut(s) 155
CseI GACGC 1 cut(s) 638
Csp6I GTAC 1 cut(s) 1270
CspCI CAANNNNNGTGG 4 cut(s) 337, 372, 622, 657
CviQI GTAC 1 cut(s) 1270
DdeI CTNAG 1 cut(s) 722
DpnI GATC 4 cut(s) 114, 140, 242, 1236
DpnII GATC 4 cut(s) 112, 138, 240, 1234
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 88
Eco130I CCWWGG 2 cut(s) 85, 970
Eco57I CTGAAG 1 cut(s) 428
EcoRII CCWGG 3 cut(s) 260, 1348, 1359
EcoT14I CCWWGG 2 cut(s) 85, 970
EcoT22I ATGCAT 3 cut(s) 396, 1061, 1091
ErhI CCWWGG 2 cut(s) 85, 970
Esp3I CGTCTC 3 cut(s) 148, 193, 791
FaqI GGGAC 1 cut(s) 25
FauNDI CATATG 2 cut(s) 456, 793
FbaI TGATCA 2 cut(s) 112, 240
Fnu4HI GCNGC 3 cut(s) 402, 1175, 1243
FokI GGATG 7 cut(s) 478, 488, 613, 944, 991, 1068, 1098
Fsp4HI GCNGC 3 cut(s) 402, 1175, 1243
GlaI GCGC 1 cut(s) 154
GluI GCNGC 3 cut(s) 402, 1175, 1243
HaeIII GGCC 1 cut(s) 90
HapII CCGG 1 cut(s) 929
HgaI GACGC 1 cut(s) 638
HhaI GCGC 1 cut(s) 155
Hin1I GRCGYC 1 cut(s) 630
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HindIII AAGCTT 1 cut(s) 917
HinfI GANTC 3 cut(s) 422, 718, 847
HpaII CCGG 1 cut(s) 929
HphI GGTGA 3 cut(s) 751, 1193, 1216
Hpy166II GTNNAC 2 cut(s) 28, 607
Hpy188I TCNGA 5 cut(s) 163, 200, 245, 408, 1196
Hpy188III TCNNGA 1 cut(s) 898
Hpy8I GTNNAC 2 cut(s) 28, 607
HpyAV CCTTC 7 cut(s) 349, 466, 808, 904, 983, 990, 1195
HpyCH4III ACNGT 3 cut(s) 611, 637, 1181
HpyCH4IV ACGT 4 cut(s) 120, 375, 800, 1251
HpyF10VI GCNNNNNNNGC 4 cut(s) 210, 862, 881, 925
HpyF3I CTNAG 1 cut(s) 722
HpySE526I ACGT 4 cut(s) 120, 375, 800, 1251
Hsp92I GRCGYC 1 cut(s) 630
HspAI GCGC 1 cut(s) 153
Ksp22I TGATCA 2 cut(s) 112, 240
Kzo9I GATC 4 cut(s) 112, 138, 240, 1234
LmnI GCTCC 3 cut(s) 776, 1163, 1222
Lsp1109I GCAGC 3 cut(s) 388, 1161, 1254
LweI GCATC 5 cut(s) 381, 871, 915, 1046, 1076
MaeII ACGT 4 cut(s) 120, 375, 800, 1251
MaeIII GTNAC 3 cut(s) 643, 739, 937
MalI GATC 4 cut(s) 114, 140, 242, 1236
MboI GATC 4 cut(s) 112, 138, 240, 1234
MboII GAAGA 6 cut(s) 268, 797, 832, 913, 1005, 1247
MfeI CAATTG 1 cut(s) 362
MhlI GDGCHC 2 cut(s) 30, 1194
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 4 cut(s) 325, 362, 745, 890
MluNI TGGCCA 1 cut(s) 90
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 2 cut(s) 399, 867
MnlI CCTC 9 cut(s) 239, 522, 659, 681, 968, 1087, 1090, 1143, 1200
Mox20I TGGCCA 1 cut(s) 90
Mph1103I ATGCAT 3 cut(s) 396, 1061, 1091
MscI TGGCCA 1 cut(s) 90
MseI TTAA 2 cut(s) 708, 1366
MslI CAYNNNNRTG 4 cut(s) 455, 459, 870, 1124
Msp20I TGGCCA 1 cut(s) 90
MspI CCGG 1 cut(s) 929
MspR9I CCNGG 3 cut(s) 262, 1350, 1361
MunI CAATTG 1 cut(s) 362
Mva1269I GAATGC 1 cut(s) 303
MvaI CCWGG 3 cut(s) 262, 1350, 1361
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 4 cut(s) 210, 862, 881, 925
NcoI CCATGG 2 cut(s) 85, 970
NdeI CATATG 2 cut(s) 456, 793
NdeII GATC 4 cut(s) 112, 138, 240, 1234
NlaIV GGNNCC 1 cut(s) 1230
NmeAIII GCCGAG 1 cut(s) 632
NmuCI GTSAC 2 cut(s) 643, 739
NsiI ATGCAT 3 cut(s) 396, 1061, 1091
NspI RCATGY 4 cut(s) 74, 763, 1123, 1270
PaeI GCATGC 1 cut(s) 1123
PciI ACATGT 3 cut(s) 70, 759, 1266
PcsI WCGNNNNNNNCGW 1 cut(s) 839
PctI GAATGC 1 cut(s) 303
PfeI GAWTC 2 cut(s) 718, 847
PflMI CCANNNNNTGG 1 cut(s) 1349
PkrI GCNGC 3 cut(s) 403, 1176, 1244
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PscI ACATGT 3 cut(s) 70, 759, 1266
PshBI ATTAAT 1 cut(s) 708
PsiI TTATAA 1 cut(s) 291
Psp6I CCWGG 3 cut(s) 260, 1348, 1359
PspGI CCWGG 3 cut(s) 260, 1348, 1359
PspN4I GGNNCC 1 cut(s) 1230
PstI CTGCAG 1 cut(s) 170
PstNI CAGNNNCTG 2 cut(s) 623, 1349
RsaI GTAC 1 cut(s) 1271
RsaNI GTAC 1 cut(s) 1270
RseI CAYNNNNRTG 4 cut(s) 455, 459, 870, 1124
SaqAI TTAA 2 cut(s) 708, 1366
SatI GCNGC 3 cut(s) 402, 1175, 1243
Sau3AI GATC 4 cut(s) 112, 138, 240, 1234
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 3 cut(s) 262, 1350, 1361
SduI GDGCHC 2 cut(s) 30, 1194
SfaNI GCATC 5 cut(s) 381, 871, 915, 1046, 1076
SfcI CTRYAG 2 cut(s) 166, 964
SmiMI CAYNNNNRTG 4 cut(s) 455, 459, 870, 1124
SmlI CTYRAG 2 cut(s) 347, 920
SmoI CTYRAG 2 cut(s) 347, 920
SphI GCATGC 1 cut(s) 1123
Sse9I AATT 4 cut(s) 325, 362, 745, 890
SsiI CCGC 3 cut(s) 155, 564, 774
StyD4I CCNGG 3 cut(s) 260, 1348, 1359
StyI CCWWGG 2 cut(s) 85, 970
TaaI ACNGT 3 cut(s) 611, 637, 1181
TaiI ACGT 4 cut(s) 123, 378, 803, 1254
TaqI TCGA 2 cut(s) 899, 1262
TasI AATT 4 cut(s) 325, 362, 745, 890
TfiI GAWTC 2 cut(s) 718, 847
Tru1I TTAA 2 cut(s) 708, 1366
Tru9I TTAA 2 cut(s) 708, 1366
TscAI CASTG 1 cut(s) 616
TseFI GTSAC 2 cut(s) 643, 739
TseI GCWGC 3 cut(s) 401, 1174, 1242
Tsp45I GTSAC 2 cut(s) 643, 739
TspDTI ATGAA 8 cut(s) 443, 519, 686, 827, 948, 1002, 1058, 1308
TspGWI ACGGA 2 cut(s) 613, 1068
TspRI CASTG 1 cut(s) 616
Van91I CCANNNNNTGG 1 cut(s) 1349
VneI GTGCAC 1 cut(s) 26
VspI ATTAAT 1 cut(s) 708
XceI RCATGY 4 cut(s) 74, 763, 1123, 1270
Zsp2I ATGCAT 3 cut(s) 396, 1061, 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.