Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0018533

Physical Location & Seq

Genomic Coordinates Forward (+)

22017194 .. 22019281

Gene Structure 2088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAGCCTCAGTGCTTCTCAGCCGTTGGATCCATGGCAAAGCTGACCAGCTTCACCATTCTGCTCGTCTTCTTGCTTTCCTGCTTCACTTTTACTTCTACAGAAGCCTATGATGCTCTTGATCCAAATGGGAATATTACAATTAAATGGGATGTCATCAGTTGGACTCCGGATGGTTATCTTGCTGTAGTTACAATGTTTAACTTCCAGCAGTATCGGCATATACAAGCGCCAGGTTGGACATTGGGATGGACATGGGCAAAAAAGGAAGTAATCTGGAGCATGGTGGGAGCACAAGCAACAGAGCAAGGGGATTGCTCGAAATACAAAGGGAACGTCCCACATTGCTGTAAGAAGGATCGATCAACAAACCACTGTTGTGGATTTGTTGCCAGGAACCCCCTACAATCAGCAGATTGCAAACTGCTGCAAGGGCGGAGTCATGCAATCATGGATCCAGGACCCAGACAATGCCATAAGTTCGTTTCAGGTCAGTGTGGGTGCTGCTGGAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009505 GO:0009628 GO:0009651 GO:0009664 GO:0009825 GO:0009832 GO:0009897 GO:0009930 GO:0009986 GO:0009987 GO:0010215 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030198 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0040007 GO:0042546 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0050896 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0098552

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

173

Amino Acids

19.23

Weight (kDa)

8.26

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018533)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g18180
rosa_chinensis	RchiOBHm_Chr2g0130691
rosa_multiflora	Rmu_co8433061.1_g000001 Rmu_sc0002279.1_g000054 Rmu_sc0041315.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113710
rosa_samantha	Rh2AG344100 Rh2CG331300 Rh2DG370600
rosa_wichuraiana	Rw2G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	1 cut(s)	436
AclWI	GGATC	6 cut(s)	24, 37, 116, 366, 449, 462
AjnI	CCWGG	3 cut(s)	232, 392, 457
AleI	CACNNNNGTG	1 cut(s)	378
AluBI	AGCT	2 cut(s)	43, 51
AluI	AGCT	2 cut(s)	43, 51
Alw21I	GWGCWC	1 cut(s)	295
AlwI	GGATC	6 cut(s)	24, 37, 116, 366, 449, 462
Aor13HI	TCCGGA	1 cut(s)	169
ApeKI	GCWGC	2 cut(s)	427, 504
ArsI	GACNNNNNNTTYG	2 cut(s)	321, 353
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	461
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	461
BamHI	GGATCC	2 cut(s)	29, 454
BbsI	GAAGAC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	414, 491
BccI	CCATC	2 cut(s)	167, 243
BceAI	ACGGC	1 cut(s)	8
BciT130I	CCWGG	3 cut(s)	234, 394, 459
BfmI	CTRYAG	2 cut(s)	99, 186
BfoI	RGCGCY	1 cut(s)	233
BisI	GCNGC	2 cut(s)	428, 505
BlsI	GCNGC	2 cut(s)	429, 506
Bme1390I	CCNGG	3 cut(s)	234, 394, 459
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	461
BmiI	GGNNCC	5 cut(s)	6, 31, 398, 456, 463
BmrFI	CCNGG	3 cut(s)	234, 394, 459
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	61
BpmI	CTGGAG	1 cut(s)	298
Bsa29I	ATCGAT	1 cut(s)	361
BsaBI	GATNNNNATC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	343
Bse8I	GATNNNNATC	1 cut(s)	177
BseAI	TCCGGA	1 cut(s)	169
BseBI	CCWGG	3 cut(s)	234, 394, 459
BseCI	ATCGAT	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	3 cut(s)	157, 178, 254
BseJI	GATNNNNATC	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	2 cut(s)	23, 33
BseXI	GCAGC	2 cut(s)	414, 491
BshVI	ATCGAT	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	5 cut(s)	29, 121, 358, 362, 454
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	1 cut(s)	436
BspCNI	CTCAG	2 cut(s)	22, 32
BspDI	ATCGAT	1 cut(s)	361
BspEI	TCCGGA	1 cut(s)	169
BspLI	GGNNCC	5 cut(s)	6, 31, 398, 456, 463
BspPI	GGATC	6 cut(s)	24, 37, 116, 366, 449, 462
BsrDI	GCAATG	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	5 cut(s)	29, 121, 358, 362, 454
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	3 cut(s)	234, 394, 459
Bst4CI	ACNGT	1 cut(s)	377
BstDEI	CTNAG	2 cut(s)	9, 19
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	3 cut(s)	157, 178, 254
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	5 cut(s)	32, 124, 361, 365, 457
BstMBI	GATC	5 cut(s)	29, 121, 358, 362, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 217, 433
BstNI	CCWGG	3 cut(s)	234, 394, 459
BstSCI	CCNGG	3 cut(s)	232, 392, 457
BstSFI	CTRYAG	2 cut(s)	99, 186
BstV1I	GCAGC	2 cut(s)	414, 491
BstV2I	GAAGAC	1 cut(s)	61
BstX2I	RGATCY	2 cut(s)	29, 454
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstYI	RGATCY	2 cut(s)	29, 454
Bsu15I	ATCGAT	1 cut(s)	361
BsuTUI	ATCGAT	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	3 cut(s)	157, 178, 254
BtsIMutI	CAGTG	3 cut(s)	17, 373, 500
CfoI	GCGC	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	461
ClaI	ATCGAT	1 cut(s)	361
CviAII	CATG	5 cut(s)	34, 255, 283, 443, 451
CviJI	RGCY	5 cut(s)	7, 23, 43, 51, 107
CviKI_1	RGCY	5 cut(s)	7, 23, 43, 51, 107
DdeI	CTNAG	2 cut(s)	9, 19
DpnI	GATC	5 cut(s)	31, 123, 360, 364, 456
DpnII	GATC	5 cut(s)	29, 121, 358, 362, 454
EciI	GGCGGA	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	461
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRII	CCWGG	3 cut(s)	232, 392, 457
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	5 cut(s)	37, 258, 286, 446, 454
FaiI	YATR	9 cut(s)	35, 111, 222, 224, 256, 284, 444, 452, 477
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	5 cut(s)	33, 254, 282, 442, 450
Fnu4HI	GCNGC	2 cut(s)	428, 505
FokI	GGATG	3 cut(s)	164, 185, 261
Fsp4HI	GCNGC	2 cut(s)	428, 505
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	2 cut(s)	428, 505
GsuI	CTGGAG	1 cut(s)	298
HaeII	RGCGCY	1 cut(s)	233
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	5 cut(s)	37, 258, 286, 446, 454
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HinfI	GANTC	2 cut(s)	166, 439
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	46
Hpy188III	TCNNGA	3 cut(s)	119, 170, 277
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	3 cut(s)	420, 430, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 217, 433
HpyF3I	CTNAG	2 cut(s)	9, 19
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	5 cut(s)	37, 258, 286, 446, 454
HspAI	GCGC	1 cut(s)	230
Kpn2I	TCCGGA	1 cut(s)	169
Kzo9I	GATC	5 cut(s)	29, 121, 358, 362, 454
LmnI	GCTCC	3 cut(s)	4, 279, 290
Lsp1109I	GCAGC	2 cut(s)	414, 491
LweI	GCATC	1 cut(s)	103
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	5 cut(s)	31, 123, 360, 364, 456
MboI	GATC	5 cut(s)	29, 121, 358, 362, 454
MboII	GAAGA	1 cut(s)	61
MflI	RGATCY	2 cut(s)	29, 454
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	1 cut(s)	141
MlyI	GAGTC	2 cut(s)	160, 448
MmeI	TCCRAC	3 cut(s)	7, 143, 218
MnlI	CCTC	1 cut(s)	18
MroI	TCCGGA	1 cut(s)	169
MseI	TTAA	2 cut(s)	144, 201
MslI	CAYNNNNRTG	2 cut(s)	247, 378
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	3 cut(s)	234, 394, 459
MvaI	CCWGG	3 cut(s)	234, 394, 459
MwoI	GCNNNNNNNGC	3 cut(s)	113, 217, 433
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	5 cut(s)	29, 121, 358, 362, 454
NlaIII	CATG	5 cut(s)	37, 258, 286, 446, 454
NlaIV	GGNNCC	5 cut(s)	6, 31, 398, 456, 463
OliI	CACNNNNGTG	1 cut(s)	378
PfoI	TCCNGGA	1 cut(s)	457
PkrI	GCNGC	2 cut(s)	429, 506
PleI	GAGTC	2 cut(s)	160, 447
PpsI	GAGTC	2 cut(s)	160, 447
PpuMI	RGGWCCY	1 cut(s)	461
Psp5II	RGGWCCY	1 cut(s)	461
Psp6I	CCWGG	3 cut(s)	232, 392, 457
PspGI	CCWGG	3 cut(s)	232, 392, 457
PspN4I	GGNNCC	5 cut(s)	6, 31, 398, 456, 463
PspPI	GGNCC	1 cut(s)	461
PspPPI	RGGWCCY	1 cut(s)	461
PsuI	RGATCY	2 cut(s)	29, 454
RseI	CAYNNNNRTG	2 cut(s)	247, 378
SaqAI	TTAA	2 cut(s)	144, 201
SatI	GCNGC	2 cut(s)	428, 505
Sau3AI	GATC	5 cut(s)	29, 121, 358, 362, 454
Sau96I	GGNCC	1 cut(s)	461
SchI	GAGTC	2 cut(s)	160, 448
ScrFI	CCNGG	3 cut(s)	234, 394, 459
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	5 cut(s)	45, 53, 238, 339, 493
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	2 cut(s)	99, 186
SinI	GGWCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	2 cut(s)	247, 378
Sse9I	AATT	1 cut(s)	141
SsiI	CCGC	1 cut(s)	436
SspI	AATATT	1 cut(s)	136
StyD4I	CCNGG	3 cut(s)	232, 392, 457
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	2 cut(s)	320, 361
TasI	AATT	1 cut(s)	141
Tru1I	TTAA	2 cut(s)	144, 201
Tru9I	TTAA	2 cut(s)	144, 201
TscAI	CASTG	3 cut(s)	17, 380, 500
TseI	GCWGC	2 cut(s)	427, 504
TspRI	CASTG	3 cut(s)	17, 380, 500
VpaK11BI	GGWCC	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.