Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041315.1

Orthogroup ID

OG0018533

Physical Location & Seq

Genomic Coordinates Forward (+)

6 .. 1048

Gene Structure 1043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041315.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atggagtcccagtgcctctcagccactggatccatagctaaactcagcagcttcaccattctgcttttatttttggtttcctgcctcactttcacttctacagaagcttatgatgcgcttgatccacttgggaatattaccattaaatgggatgtcattagttggactcctgatggatatgttgccgttgttacaatgttcaacttccagcagtatcgccacatacaagcgccaggttggacgttaggatggacatgggcaaagaaggaagtaatctggagcatggtgggagcgcaaaccacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009505 GO:0009628 GO:0009651 GO:0009664 GO:0009825 GO:0009832 GO:0009897 GO:0009930 GO:0009986 GO:0009987 GO:0010215 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030198 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0040007 GO:0042546 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0050896 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0098552

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

101

Amino Acids

11.3

Weight (kDa)

5.0

Isoelectric Point (pI)

27.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018533)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g18180
rosa_chinensis	RchiOBHm_Chr2g0130691
rosa_multiflora	Rmu_co8433061.1_g000001 Rmu_sc0002279.1_g000054 Rmu_sc0041315.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113710
rosa_samantha	Rh2AG344100 Rh2CG331300 Rh2DG370600
rosa_wichuraiana	Rw2G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	147
AclWI	GGATC	3 cut(s)	24, 37, 116
AfiI	CCNNNNNNNGG	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	3 cut(s)	38, 51, 107
AluI	AGCT	3 cut(s)	38, 51, 107
AlwI	GGATC	3 cut(s)	24, 37, 116
AlwNI	CAGNNNCTG	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	48
AspLEI	GCGC	3 cut(s)	118, 232, 295
AsuHPI	GGTGA	1 cut(s)	46
BamHI	GGATCC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	2 cut(s)	167, 243
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	233
BisI	GCNGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	50
Bme1390I	CCNGG	1 cut(s)	234
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	1 cut(s)	4
BmsI	GCATC	1 cut(s)	103
BmuI	ACTGGG	1 cut(s)	4
BpmI	CTGGAG	1 cut(s)	298
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse1I	ACTGG	2 cut(s)	10, 31
BseBI	CCWGG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	157, 254
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMII	CTCAG	2 cut(s)	33, 58
BseNI	ACTGG	2 cut(s)	10, 31
BseXI	GCAGC	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	29, 121
BspCNI	CTCAG	2 cut(s)	32, 57
BspLI	GGNNCC	1 cut(s)	31
BspPI	GGATC	3 cut(s)	24, 37, 116
BsrI	ACTGG	2 cut(s)	10, 31
BssMI	GATC	2 cut(s)	29, 121
Bst2UI	CCWGG	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	19, 44
BstF5I	GGATG	2 cut(s)	157, 254
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	3 cut(s)	118, 232, 295
BstKTI	GATC	2 cut(s)	32, 124
BstMBI	GATC	2 cut(s)	29, 121
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BtsCI	GGATG	2 cut(s)	157, 254
BtsIMutI	CAGTG	2 cut(s)	17, 24
CaiI	CAGNNNCTG	1 cut(s)	26
CfoI	GCGC	3 cut(s)	118, 232, 295
CviAII	CATG	2 cut(s)	255, 283
CviJI	RGCY	4 cut(s)	23, 38, 51, 107
CviKI_1	RGCY	4 cut(s)	23, 38, 51, 107
DdeI	CTNAG	2 cut(s)	19, 44
DpnI	GATC	2 cut(s)	31, 123
DpnII	GATC	2 cut(s)	29, 121
EcoRII	CCWGG	1 cut(s)	232
FaeI	CATG	2 cut(s)	258, 286
FaiI	YATR	6 cut(s)	35, 111, 180, 224, 256, 284
FatI	CATG	2 cut(s)	254, 282
Fnu4HI	GCNGC	1 cut(s)	49
FokI	GGATG	2 cut(s)	164, 261
Fsp4HI	GCNGC	1 cut(s)	49
GlaI	GCGC	3 cut(s)	117, 231, 294
GluI	GCNGC	1 cut(s)	49
GsuI	CTGGAG	1 cut(s)	298
HaeII	RGCGCY	1 cut(s)	233
HhaI	GCGC	3 cut(s)	118, 232, 295
Hin1II	CATG	2 cut(s)	258, 286
Hin6I	GCGC	3 cut(s)	116, 230, 293
HinP1I	GCGC	3 cut(s)	116, 230, 293
HindIII	AAGCTT	1 cut(s)	105
HinfI	GANTC	2 cut(s)	5, 166
HphI	GGTGA	1 cut(s)	46
Hpy188III	TCNNGA	2 cut(s)	170, 277
HpyAV	CCTTC	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	2 cut(s)	19, 44
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	2 cut(s)	258, 286
HspAI	GCGC	3 cut(s)	116, 230, 293
Kzo9I	GATC	2 cut(s)	29, 121
LmnI	GCTCC	2 cut(s)	279, 290
LpnPI	CCDG	8 cut(s)	12, 23, 94, 183, 219, 221, 246, 262
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	1 cut(s)	103
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	31, 123
MboI	GATC	2 cut(s)	29, 121
MflI	RGATCY	1 cut(s)	29
MlyI	GAGTC	2 cut(s)	14, 160
MmeI	TCCRAC	2 cut(s)	143, 218
MnlI	CCTC	2 cut(s)	26, 95
MseI	TTAA	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	2 cut(s)	29, 121
NlaIII	CATG	2 cut(s)	258, 286
NlaIV	GGNNCC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	50
PleI	GAGTC	2 cut(s)	13, 160
PpsI	GAGTC	2 cut(s)	13, 160
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	31
PstNI	CAGNNNCTG	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	1 cut(s)	49
Sau3AI	GATC	2 cut(s)	29, 121
SchI	GAGTC	2 cut(s)	14, 160
ScrFI	CCNGG	1 cut(s)	234
SetI	ASST	5 cut(s)	40, 53, 109, 238, 245
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	99
SspI	AATATT	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	232
TaiI	ACGT	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	2 cut(s)	17, 31
TseI	GCWGC	1 cut(s)	48
TspRI	CASTG	2 cut(s)	17, 31
Van91I	CCANNNNNTGG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.