Rmu_co8433061.1_g000001

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8433061.1
OG0018533
Physical Location & Seq
Reverse (-)
1 .. 463
463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8433061.1_g000001.1.cds

Sequence Viewer

Length: 234 bp
atgaggtttgttgtatcagctctattccttcttgtcatcttttcatatgcagctgcatttgatcccttggatccaaatggaaacataaccatacgatgggacataatgtcttggacaccagatggctatgtggcaactgtaaccataaacaacttccaaatgtatcggcacataatgagccctgggtggacattaggttggacatgggctaaaaaagaagtgatatggtccgcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

78

Amino Acids

9.03

Weight (kDa)

6.52

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018533)

Species Orthologous Gene IDs
pyrus_communis pycom06g18180
rosa_chinensis RchiOBHm_Chr2g0130691
rosa_multiflora Rmu_co8433061.1_g000001 Rmu_sc0002279.1_g000054 Rmu_sc0041315.1_g000001
rosa_roxburghii Rroxscaffold_2G00113710
rosa_samantha Rh2AG344100 Rh2CG331300 Rh2DG370600
rosa_wichuraiana Rw2G027550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 96
AccII CGCG 1 cut(s) 233
AciI CCGC 1 cut(s) 231
AclWI GGATC 3 cut(s) 56, 65, 78
AfiI CCNNNNNNNGG 1 cut(s) 96
AhdI GACNNNNNGTC 1 cut(s) 106
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 2 cut(s) 20, 53
AluI AGCT 2 cut(s) 20, 53
AlwI GGATC 3 cut(s) 56, 65, 78
ApeKI GCWGC 2 cut(s) 50, 53
AspS9I GGNCC 1 cut(s) 228
AvaII GGWCC 1 cut(s) 228
BamHI GGATCC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 182
BbvI GCAGC 2 cut(s) 40, 62
BccI CCATC 2 cut(s) 90, 116
BciT130I CCWGG 1 cut(s) 183
BisI GCNGC 2 cut(s) 51, 54
BlsI GCNGC 2 cut(s) 52, 55
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 228
BmeRI GACNNNNNGTC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 183
BsaJI CCNNGG 3 cut(s) 66, 181, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 3 cut(s) 66, 181, 182
BseLI CCNNNNNNNGG 1 cut(s) 96
BseXI GCAGC 2 cut(s) 40, 62
Bsh1236I CGCG 1 cut(s) 233
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 96
BsmFI GGGAC 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 2 cut(s) 61, 70
BspACI CCGC 1 cut(s) 231
BspFNI CGCG 1 cut(s) 233
BspLI GGNNCC 1 cut(s) 72
BspPI GGATC 3 cut(s) 56, 65, 78
BssECI CCNNGG 3 cut(s) 66, 181, 182
BssMI GATC 2 cut(s) 61, 70
BssT1I CCWWGG 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 139
BstFNI CGCG 1 cut(s) 233
BstKTI GATC 2 cut(s) 64, 73
BstMBI GATC 2 cut(s) 61, 70
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 181
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 2 cut(s) 40, 62
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 228
CviAII CATG 1 cut(s) 204
CviJI RGCY 5 cut(s) 20, 53, 126, 180, 209
CviKI_1 RGCY 5 cut(s) 20, 53, 126, 180, 209
DpnI GATC 2 cut(s) 63, 72
DpnII GATC 2 cut(s) 61, 70
DriI GACNNNNNGTC 1 cut(s) 106
Eam1105I GACNNNNNGTC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 1 cut(s) 207
FaqI GGGAC 1 cut(s) 113
FatI CATG 1 cut(s) 203
FauNDI CATATG 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 51, 54
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 2 cut(s) 51, 54
GluI GCNGC 2 cut(s) 51, 54
Hin1II CATG 1 cut(s) 207
Hpy166II GTNNAC 1 cut(s) 189
Hpy8I GTNNAC 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 50, 56
Hsp92II CATG 1 cut(s) 207
Kzo9I GATC 2 cut(s) 61, 70
LpnPI CCDG 3 cut(s) 132, 168, 195
Lsp1109I GCAGC 2 cut(s) 40, 62
MaeIII GTNAC 1 cut(s) 139
MalI GATC 2 cut(s) 63, 72
MboI GATC 2 cut(s) 61, 70
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MvnI CGCG 1 cut(s) 233
NdeI CATATG 1 cut(s) 46
NdeII GATC 2 cut(s) 61, 70
NlaIII CATG 1 cut(s) 207
NlaIV GGNNCC 1 cut(s) 72
PasI CCCWGGG 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 96
PkrI GCNGC 2 cut(s) 52, 55
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 228
PsuI RGATCY 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 53
SatI GCNGC 2 cut(s) 51, 54
Sau3AI GATC 2 cut(s) 61, 70
Sau96I GGNCC 1 cut(s) 228
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 1 cut(s) 182
SetI ASST 4 cut(s) 8, 22, 55, 199
SgeI CNNG 7 cut(s) 44, 79, 123, 131, 194, 195, 216
SinI GGWCC 1 cut(s) 228
SsiI CCGC 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 139
TseI GCWGC 2 cut(s) 50, 53
TspDTI ATGAA 1 cut(s) 33
Van91I CCANNNNNTGG 1 cut(s) 96
VpaK11BI GGWCC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.