Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0018533

Physical Location & Seq

Genomic Coordinates Reverse (-)

43248996 .. 43251013

Gene Structure 2018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G027550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCACCGAACGAAACCAAGCACTGAAGAGTTTGAGCTCTCAGCTCTCCACATTCAACTACAGATTGGTTACGTGGATGGGACTCTTGCAGAGGCCTGTGATCCATTGGATCCCAATGGAAACATTACTATTCGTTGGGATATAATGAATTGGGTGCCAGATGGATACGAGGCAACCATCACAATGTTTGACTTCCAGAAATATCGGCATATCGAACAGCCAGGACCCACTCCACACTGTTGCAAGAAGAATCCACAAGTTGTGGACTTACTTCCTGATGTTCCTATTGACGAGCAGGTCGGAAGTTGTTGTAGGGGAGGAGTCATGAGCTCGTTGATTCAGGACACGAGCAAAGCTGTCAGCAGATTCCAGATTACTGTGGGTGGTGCCGGAAGTAACAAGAGCACTATCAAAGTCCCCAACCATTTTTTACTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009505 GO:0009628 GO:0009651 GO:0009664 GO:0009825 GO:0009832 GO:0009897 GO:0009930 GO:0009986 GO:0009987 GO:0010215 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030198 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0040007 GO:0042546 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0050896 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0098552

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

146

Amino Acids

16.18

Weight (kDa)

5.42

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	77 - 145	1.6e-20	COBRA-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018533)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g18180
rosa_chinensis	RchiOBHm_Chr2g0130691
rosa_multiflora	Rmu_co8433061.1_g000001 Rmu_sc0002279.1_g000054 Rmu_sc0041315.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113710
rosa_samantha	Rh2AG344100 Rh2CG331300 Rh2DG370600
rosa_wichuraiana	Rw2G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	286
AccB1I	GGYRCC	2 cut(s)	154, 386
AclWI	GGATC	3 cut(s)	95, 104, 117
AcuI	CTGAAG	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	4 cut(s)	37, 44, 330, 356
AluI	AGCT	4 cut(s)	37, 44, 330, 356
Alw21I	GWGCWC	3 cut(s)	39, 332, 407
AlwI	GGATC	3 cut(s)	95, 104, 117
AoxI	GGCC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	224
BamHI	GGATCC	1 cut(s)	109
BanI	GGYRCC	2 cut(s)	154, 386
BanII	GRGCYC	2 cut(s)	39, 332
BauI	CACGAG	1 cut(s)	346
Bbv12I	GWGCWC	3 cut(s)	39, 332, 407
BccI	CCATC	3 cut(s)	71, 155, 185
BciT130I	CCWGG	1 cut(s)	222
BciVI	GTATCC	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	59
BfuAI	ACCTGC	1 cut(s)	286
BfuI	GTATCC	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	4 cut(s)	111, 156, 226, 388
BmrFI	CCNGG	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	95
BshNI	GGYRCC	2 cut(s)	154, 386
BsiHKAI	GWGCWC	3 cut(s)	39, 332, 407
BsiSI	CCGG	1 cut(s)	390
BslFI	GGGAC	2 cut(s)	94, 401
BsmFI	GGGAC	2 cut(s)	94, 401
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	3 cut(s)	39, 332, 407
Bsp143I	GATC	2 cut(s)	100, 109
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	324
BspLI	GGNNCC	4 cut(s)	111, 156, 226, 388
BspMI	ACCTGC	1 cut(s)	286
BspPI	GGATC	3 cut(s)	95, 104, 117
BspT107I	GGYRCC	2 cut(s)	154, 386
BssMI	GATC	2 cut(s)	100, 109
BssSI	CACGAG	1 cut(s)	346
Bst2BI	CACGAG	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	239, 379
Bst6I	CTCTTC	1 cut(s)	21
BstBAI	YACGTR	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	2 cut(s)	103, 112
BstMBI	GATC	2 cut(s)	100, 109
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	59
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	82
BtsIMutI	CAGTG	2 cut(s)	21, 235
BveI	ACCTGC	1 cut(s)	286
CciI	TCATGA	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	224
CviAII	CATG	1 cut(s)	325
CviJI	RGCY	6 cut(s)	37, 44, 95, 220, 330, 356
CviKI_1	RGCY	6 cut(s)	37, 44, 95, 220, 330, 356
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	2 cut(s)	102, 111
DpnII	GATC	2 cut(s)	100, 109
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Ecl136II	GAGCTC	2 cut(s)	37, 330
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	2 cut(s)	39, 332
Eco47I	GGWCC	1 cut(s)	224
Eco53kI	GAGCTC	2 cut(s)	37, 330
Eco57I	CTGAAG	1 cut(s)	45
EcoICRI	GAGCTC	2 cut(s)	37, 330
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	220
EcoT38I	GRGCYC	2 cut(s)	39, 332
FaeI	CATG	1 cut(s)	328
FaiI	YATR	3 cut(s)	143, 210, 326
FaqI	GGGAC	2 cut(s)	94, 401
FatI	CATG	1 cut(s)	324
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	2 cut(s)	39, 332
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	390
Hin1II	CATG	1 cut(s)	328
HinfI	GANTC	5 cut(s)	82, 250, 321, 337, 366
HpaII	CCGG	1 cut(s)	390
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	2 cut(s)	302, 440
Hpy188III	TCNNGA	5 cut(s)	196, 275, 325, 341, 370
Hpy8I	GTNNAC	1 cut(s)	265
HpyCH4III	ACNGT	2 cut(s)	239, 379
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	3 cut(s)	4, 89, 243
HpyF3I	CTNAG	1 cut(s)	40
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	100, 109
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	68, 395
MalI	GATC	2 cut(s)	102, 111
MboI	GATC	2 cut(s)	100, 109
MboII	GAAGA	2 cut(s)	38, 259
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	3 cut(s)	39, 332, 407
MluCI	AATT	1 cut(s)	148
MlyI	GAGTC	2 cut(s)	76, 330
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	3 cut(s)	85, 163, 311
MslI	CAYNNNNRTG	1 cut(s)	182
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
NdeII	GATC	2 cut(s)	100, 109
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	4 cut(s)	111, 156, 226, 388
PagI	TCATGA	1 cut(s)	324
PceI	AGGCCT	1 cut(s)	95
PfeI	GAWTC	3 cut(s)	250, 337, 366
PleI	GAGTC	2 cut(s)	76, 329
PpsI	GAGTC	2 cut(s)	76, 329
Ppu21I	YACGTR	1 cut(s)	73
PpuMI	RGGWCCY	1 cut(s)	224
Psp124BI	GAGCTC	2 cut(s)	39, 332
Psp5II	RGGWCCY	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	4 cut(s)	111, 156, 226, 388
PspPI	GGNCC	1 cut(s)	224
PspPPI	RGGWCCY	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	109
RseI	CAYNNNNRTG	1 cut(s)	182
SacI	GAGCTC	2 cut(s)	39, 332
Sau3AI	GATC	2 cut(s)	100, 109
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	2 cut(s)	76, 330
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	3 cut(s)	39, 332, 407
SetI	ASST	6 cut(s)	39, 46, 75, 300, 332, 358
SfcI	CTRYAG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	148
SseBI	AGGCCT	1 cut(s)	95
SstI	GAGCTC	2 cut(s)	39, 332
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	2 cut(s)	239, 379
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	148
TfiI	GAWTC	3 cut(s)	250, 337, 366
TscAI	CASTG	2 cut(s)	28, 242
TspDTI	ATGAA	1 cut(s)	161
TspRI	CASTG	2 cut(s)	28, 242
VpaK11BI	GGWCC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.