Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007752

Physical Location & Seq

Genomic Coordinates Forward (+)

3993830 .. 3997050

Gene Structure 3221 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGACAAAGAAAATCGATGGGCTTTTCTTCTCTGGTCAAATAAATGGAACTACAGGCTATGAGGAGGCTGCAGCACAAGGCATTATTTCTGGTATCAATGCTGCCAGACATTCAGATGGCAAGTCCCTCATTGTTCTTGAGAGAGAAAGCAGTTATATAGGAACATTGATTGATGATCTGGTCACAAAGGACCTTCGAGAGCCTTACCGCATGCTAACCAGTCGTTATAAGCACCGGTTACTTCTCCGATCTGATAATGCTGATAGCCGTCTCACACCACTGGGGCGTGAAATTGGGTTAATAGATGATAGACGATGGAAACTCTACCAGGACAAACAAGCTCGAATTTCAGAAGAAAAGAAGCGATTGAAAAGTGTCAGAATTTCAGGAGGGGAATTGGCAGCTGATGTTACTCGTCTTTCTAGTCAGCCAGTGAAGGACTTTACAACTTTGGAGAGTCTTCTAAAGAAACCACACATAGAATATAAAGTTCTTGATAAGCATGGTTTTGGGAATGAACTGTTGTCTAGAATAGAAAAAGAATGTGTGGAGATTGACATCAAGTATGCCGGCTTCATTCTGCGCCAACAGAGCCAACTCCAACAAATGGTCCATCAACAGCACAGATTACTTCCAGAGGACTTAGATTACTATTCAATAACAACTTTATCTCTTGAATCACGCGAGAAGCTCTCCAAGGTGAGGCCGCAGACCGTTGGTCAAGCCAGTAGGGTTGGTGGGGTGAGCCCTGCCGATATCACTGCTCTCCTCATTATCCTTGAAGCTAATAGGAGGAGAGCGCATGAACAGAAGAAGCTCGAACTGCTAAATTCTATCAAGACGGACACAGATCAGCATGCAGATGAATTGCCGTTGACTGGGACACTCAGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0036094 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048037 GO:0050660 GO:0050662 GO:0071704 GO:0090304 GO:0097159 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GIDA GIDA_assoc

Protein Analysis

299

Amino Acids

33.74

Weight (kDa)

8.95

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GIDA	PF01134	2 - 41	1e-15	Glucose inhibited division protein A
GIDA_C_1st	PF21680	103 - 197	2.3e-20	tRNA modifying enzyme MnmG/GidA C-terminal helical domain
SAM_GIDA_C	PF13932	202 - 257	3.5e-22	tRNA modifying enzyme MnmG/GidA C-terminal helical bundle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13440
fragaria_vesca	FvH4_7g05150
malus_domestica	MD02G1260800.v1.1 MD07G1060500.v1.1 MD07G1060700.v1.1
prunus_persica	Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1
pyrus_communis	pycom02g22270 pycom07g04640 pycom07g04650
rosa_chinensis	RchiOBHm_Chr1g0331701
rosa_laevigata	RLG00000029721
rosa_multiflora	Rmu_sc0004723.1_g000011 Rmu_sc0005044.1_g000002
rosa_roxburghii	Rroxscaffold_4G00318890
rosa_rugosa	Rorug01G0095700
rosa_samantha	Rh1AG119400 Rh1BG090900 Rh1CG114500 Rh1DG124900
rosa_wichuraiana	Rw1G009650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AccB7I	CCANNNNNTGG	1 cut(s)	607
AccII	CGCG	1 cut(s)	684
AciI	CCGC	2 cut(s)	208, 707
AcsI	RAATTY	3 cut(s)	345, 381, 829
AfiI	CCNNNNNNNGG	3 cut(s)	607, 702, 878
AgeI	ACCGGT	1 cut(s)	234
AgsI	TTSAA	4 cut(s)	370, 657, 677, 782
AhdI	GACNNNNNGTC	1 cut(s)	717
AjnI	CCWGG	1 cut(s)	327
AloI	GAACNNNNNNTCC	1 cut(s)	874
AluBI	AGCT	5 cut(s)	341, 404, 691, 785, 817
AluI	AGCT	5 cut(s)	341, 404, 691, 785, 817
Alw26I	GTCTC	1 cut(s)	275
AoxI	GGCC	1 cut(s)	704
ApeKI	GCWGC	4 cut(s)	68, 71, 101, 401
ApoI	RAATTY	3 cut(s)	345, 381, 829
AsiGI	ACCGGT	1 cut(s)	234
AspLEI	GCGC	2 cut(s)	585, 802
AspS9I	GGNCC	2 cut(s)	190, 610
AsuHPI	GGTGA	2 cut(s)	712, 754
AvaII	GGWCC	2 cut(s)	190, 610
BanII	GRGCYC	1 cut(s)	749
BarI	GAAGNNNNNNTAC	2 cut(s)	557, 589
BbsI	GAAGAC	1 cut(s)	452
BbvI	GCAGC	4 cut(s)	55, 83, 88, 413
BccI	CCATC	4 cut(s)	11, 110, 309, 621
BceAI	ACGGC	2 cut(s)	252, 856
BcgI	CGANNNNNNTGC	2 cut(s)	743, 777
BciT130I	CCWGG	1 cut(s)	329
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	2 cut(s)	423, 528
BfmI	CTRYAG	2 cut(s)	51, 69
BisI	GCNGC	5 cut(s)	69, 72, 102, 402, 707
BlsI	GCNGC	5 cut(s)	70, 73, 103, 403, 708
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	2 cut(s)	190, 610
BmeRI	GACNNNNNGTC	1 cut(s)	717
BmgT120I	GGNCC	2 cut(s)	190, 610
BmrFI	CCNGG	1 cut(s)	329
BmrI	ACTGGG	2 cut(s)	290, 888
BmuI	ACTGGG	2 cut(s)	290, 888
BpiI	GAAGAC	1 cut(s)	452
BplI	GAGNNNNNCTC	2 cut(s)	677, 709
BpuEI	CTTGAG	1 cut(s)	158
Bsa29I	ATCGAT	1 cut(s)	15
BsaBI	GATNNNNATC	1 cut(s)	557
BsaJI	CCNNGG	1 cut(s)	696
BsaWI	WCCGGW	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	3 cut(s)	607, 702, 878
Bse118I	RCCGGY	2 cut(s)	234, 569
Bse1I	ACTGG	5 cut(s)	219, 285, 431, 726, 883
Bse8I	GATNNNNATC	1 cut(s)	557
BseBI	CCWGG	1 cut(s)	329
BseCI	ATCGAT	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	696
BseJI	GATNNNNATC	1 cut(s)	557
BseLI	CCNNNNNNNGG	3 cut(s)	607, 702, 878
BseNI	ACTGG	5 cut(s)	219, 285, 431, 726, 883
BseRI	GAGGAG	3 cut(s)	77, 758, 808
BseXI	GCAGC	4 cut(s)	55, 83, 88, 413
Bsh1236I	CGCG	1 cut(s)	684
BshFI	GGCC	1 cut(s)	706
BshTI	ACCGGT	1 cut(s)	234
BshVI	ATCGAT	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	235, 570
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	3 cut(s)	607, 702, 878
BsmAI	GTCTC	1 cut(s)	275
BsmBI	CGTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	706
Bsp1286I	GDGCHC	1 cut(s)	749
Bsp143I	GATC	3 cut(s)	175, 248, 850
BspACI	CCGC	2 cut(s)	208, 707
BspANI	GGCC	1 cut(s)	706
BspDI	ATCGAT	1 cut(s)	15
BspFNI	CGCG	1 cut(s)	684
BspHI	TCATGA	1 cut(s)	893
BspMAI	CTGCAG	1 cut(s)	73
BsrFI	RCCGGY	2 cut(s)	234, 569
BsrI	ACTGG	5 cut(s)	219, 285, 431, 726, 883
BssAI	RCCGGY	2 cut(s)	234, 569
BssECI	CCNNGG	1 cut(s)	696
BssMI	GATC	3 cut(s)	175, 248, 850
BssT1I	CCWWGG	1 cut(s)	696
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	2 cut(s)	522, 715
BstC8I	GCNNGC	3 cut(s)	212, 571, 858
BstDEI	CTNAG	2 cut(s)	643, 887
BstFNI	CGCG	1 cut(s)	684
BstHHI	GCGC	2 cut(s)	585, 802
BstKTI	GATC	3 cut(s)	178, 251, 853
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	3 cut(s)	175, 248, 850
BstMWI	GCNNNNNNNGC	2 cut(s)	591, 823
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	2 cut(s)	214, 860
BstSCI	CCNGG	1 cut(s)	327
BstSFI	CTRYAG	2 cut(s)	51, 69
BstUI	CGCG	1 cut(s)	684
BstV1I	GCAGC	4 cut(s)	55, 83, 88, 413
BstV2I	GAAGAC	1 cut(s)	452
Bsu15I	ATCGAT	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	706
BsuTUI	ATCGAT	1 cut(s)	15
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	3 cut(s)	278, 438, 759
Cac8I	GCNNGC	3 cut(s)	212, 571, 858
CciI	TCATGA	1 cut(s)	893
CfoI	GCGC	2 cut(s)	585, 802
Cfr10I	RCCGGY	2 cut(s)	234, 569
Cfr13I	GGNCC	2 cut(s)	190, 610
ClaI	ATCGAT	1 cut(s)	15
CspAI	ACCGGT	1 cut(s)	234
CviAII	CATG	5 cut(s)	211, 503, 803, 857, 894
DdeI	CTNAG	2 cut(s)	643, 887
DpnI	GATC	3 cut(s)	177, 250, 852
DpnII	GATC	3 cut(s)	175, 248, 850
DriI	GACNNNNNGTC	1 cut(s)	717
Eam1105I	GACNNNNNGTC	1 cut(s)	717
Eco130I	CCWWGG	1 cut(s)	696
Eco24I	GRGCYC	1 cut(s)	749
Eco32I	GATATC	1 cut(s)	757
Eco47I	GGWCC	2 cut(s)	190, 610
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	327
EcoRV	GATATC	1 cut(s)	757
EcoT14I	CCWWGG	1 cut(s)	696
EcoT38I	GRGCYC	1 cut(s)	749
ErhI	CCWWGG	1 cut(s)	696
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	5 cut(s)	214, 506, 806, 860, 897
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	5 cut(s)	210, 502, 802, 856, 893
Fnu4HI	GCNGC	5 cut(s)	69, 72, 102, 402, 707
FriOI	GRGCYC	1 cut(s)	749
Fsp4HI	GCNGC	5 cut(s)	69, 72, 102, 402, 707
FspBI	CTAG	2 cut(s)	423, 528
GlaI	GCGC	2 cut(s)	584, 801
GluI	GCNGC	5 cut(s)	69, 72, 102, 402, 707
HaeIII	GGCC	1 cut(s)	706
HapII	CCGG	2 cut(s)	235, 570
HhaI	GCGC	2 cut(s)	585, 802
Hin1II	CATG	5 cut(s)	214, 506, 806, 860, 897
Hin6I	GCGC	2 cut(s)	583, 800
HinP1I	GCGC	2 cut(s)	583, 800
HincII	GTYRAC	1 cut(s)	876
HindII	GTYRAC	1 cut(s)	876
HinfI	GANTC	2 cut(s)	457, 677
HpaII	CCGG	2 cut(s)	235, 570
HphI	GGTGA	2 cut(s)	712, 754
Hpy166II	GTNNAC	1 cut(s)	876
Hpy188I	TCNGA	5 cut(s)	115, 248, 253, 352, 380
Hpy188III	TCNNGA	9 cut(s)	137, 197, 387, 494, 528, 635, 674, 838, 894
Hpy8I	GTNNAC	1 cut(s)	876
HpyAV	CCTTC	2 cut(s)	203, 430
HpyCH4III	ACNGT	2 cut(s)	522, 715
HpyCH4V	TGCA	2 cut(s)	71, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	591, 823
HpyF3I	CTNAG	2 cut(s)	643, 887
Hsp92II	CATG	5 cut(s)	214, 506, 806, 860, 897
HspAI	GCGC	2 cut(s)	583, 800
KroI	GCCGGC	1 cut(s)	569
KroNI	GCCGGC	1 cut(s)	571
Kzo9I	GATC	3 cut(s)	175, 248, 850
Lsp1109I	GCAGC	4 cut(s)	55, 83, 88, 413
MaeI	CTAG	2 cut(s)	423, 528
MaeIII	GTNAC	3 cut(s)	181, 237, 409
MalI	GATC	3 cut(s)	177, 250, 852
MboI	GATC	3 cut(s)	175, 248, 850
MboII	GAAGA	4 cut(s)	19, 365, 452, 823
MhlI	GDGCHC	1 cut(s)	749
MluCI	AATT	6 cut(s)	291, 345, 381, 395, 829, 866
MlyI	GAGTC	1 cut(s)	466
MmeI	TCCRAC	1 cut(s)	625
MnlI	CCTC	8 cut(s)	55, 58, 137, 383, 631, 696, 779, 786
MroNI	GCCGGC	1 cut(s)	569
MseI	TTAA	1 cut(s)	299
MslI	CAYNNNNRTG	2 cut(s)	114, 861
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	2 cut(s)	235, 570
MspR9I	CCNGG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	684
MwoI	GCNNNNNNNGC	2 cut(s)	591, 823
NaeI	GCCGGC	1 cut(s)	571
NdeII	GATC	3 cut(s)	175, 248, 850
NgoMIV	GCCGGC	1 cut(s)	569
NlaIII	CATG	5 cut(s)	214, 506, 806, 860, 897
NmuCI	GTSAC	1 cut(s)	181
NspI	RCATGY	2 cut(s)	214, 860
PaeI	GCATGC	2 cut(s)	214, 860
PagI	TCATGA	1 cut(s)	893
PdiI	GCCGGC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	677
PflMI	CCANNNNNTGG	1 cut(s)	607
PinAI	ACCGGT	1 cut(s)	234
PkrI	GCNGC	5 cut(s)	70, 73, 103, 403, 708
PleI	GAGTC	1 cut(s)	465
PpsI	GAGTC	1 cut(s)	465
PpuMI	RGGWCCY	1 cut(s)	190
PsiI	TTATAA	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PspPI	GGNCC	2 cut(s)	190, 610
PspPPI	RGGWCCY	1 cut(s)	190
PstI	CTGCAG	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	404
RseI	CAYNNNNRTG	2 cut(s)	114, 861
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	5 cut(s)	69, 72, 102, 402, 707
Sau3AI	GATC	3 cut(s)	175, 248, 850
Sau96I	GGNCC	2 cut(s)	190, 610
SchI	GAGTC	1 cut(s)	466
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	749
SetI	ASST	7 cut(s)	195, 343, 406, 693, 702, 787, 819
SfcI	CTRYAG	2 cut(s)	51, 69
SinI	GGWCC	2 cut(s)	190, 610
SmiMI	CAYNNNNRTG	2 cut(s)	114, 861
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SphI	GCATGC	2 cut(s)	214, 860
Sse9I	AATT	6 cut(s)	291, 345, 381, 395, 829, 866
SsiI	CCGC	2 cut(s)	208, 707
SspMI	CTAG	2 cut(s)	423, 528
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	2 cut(s)	522, 715
TaqI	TCGA	4 cut(s)	15, 196, 343, 819
TasI	AATT	6 cut(s)	291, 345, 381, 395, 829, 866
TauI	GCSGC	1 cut(s)	709
TfiI	GAWTC	1 cut(s)	677
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TscAI	CASTG	3 cut(s)	285, 438, 766
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	4 cut(s)	68, 71, 101, 401
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	5 cut(s)	531, 565, 819, 879, 882
TspGWI	ACGGA	1 cut(s)	857
TspRI	CASTG	3 cut(s)	285, 438, 766
Van91I	CCANNNNNTGG	1 cut(s)	607
VpaK11BI	GGWCC	2 cut(s)	190, 610
XapI	RAATTY	3 cut(s)	345, 381, 829
XbaI	TCTAGA	1 cut(s)	527
XceI	RCATGY	2 cut(s)	214, 860
XspI	CTAG	2 cut(s)	423, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.