pycom07g08770

Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
8011033 .. 8011257
225 bp
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UTR
Exon/CDS
Intron
pycom07g08770.1

Sequence Viewer

Length: 225 bp
ATGCCTCTGGAAGAAAGCCGCAAGCCTTTGACGGTCACTTTGACGGTTACTTTGCATTCGACCATTGGATTCTTGCAGCTCATCAAGCTTCCTCTTCATGCCCGACGAATAGTTATTTGCAAGCACATGCAAACTTCTATTCTCGTACTTAAGCAGTTTGATCTCTTGCTTAAGACTTTCCACCTCCGCCATCAAGGATTCAACTTGGCGGGAGCGAGCAAGTAG

Protein Analysis

75

Amino Acids

8.44

Weight (kDa)

10.63

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 19, 187, 209
AfaI GTAC 1 cut(s) 147
AflII CTTAAG 2 cut(s) 149, 170
AgsI TTSAA 1 cut(s) 202
AluBI AGCT 2 cut(s) 79, 88
AluI AGCT 2 cut(s) 79, 88
ApeKI GCWGC 1 cut(s) 76
ArsI GACNNNNNNTTYG 4 cut(s) 22, 34, 54, 66
BbvI GCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 198
BfrI CTTAAG 2 cut(s) 149, 170
BisI GCNGC 2 cut(s) 19, 77
BlsI GCNGC 2 cut(s) 20, 78
BseXI GCAGC 1 cut(s) 88
BsmI GAATGC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 3 cut(s) 19, 187, 209
BspTI CTTAAG 2 cut(s) 149, 170
BssMI GATC 1 cut(s) 160
Bst4CI ACNGT 2 cut(s) 34, 46
Bst6I CTCTTC 1 cut(s) 99
BstAFI CTTAAG 2 cut(s) 149, 170
BstC8I GCNNGC 3 cut(s) 23, 122, 217
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNSI RCATGY 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 88
Cac8I GCNNGC 3 cut(s) 23, 122, 217
Csp6I GTAC 1 cut(s) 146
CviAII CATG 2 cut(s) 98, 127
CviJI RGCY 4 cut(s) 18, 25, 79, 88
CviKI_1 RGCY 4 cut(s) 18, 25, 79, 88
CviQI GTAC 1 cut(s) 146
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
EciI GGCGGA 1 cut(s) 176
FaeI CATG 2 cut(s) 101, 130
FaiI YATR 2 cut(s) 99, 128
FatI CATG 2 cut(s) 97, 126
FauI CCCGC 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 19, 77
Fsp4HI GCNGC 2 cut(s) 19, 77
GluI GCNGC 2 cut(s) 19, 77
Hin1II CATG 2 cut(s) 101, 130
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 2 cut(s) 69, 198
Hpy188III TCNNGA 1 cut(s) 8
Hpy99I CGWCG 1 cut(s) 108
HpyCH4III ACNGT 2 cut(s) 34, 46
HpyCH4V TGCA 4 cut(s) 55, 76, 120, 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
Hsp92II CATG 2 cut(s) 101, 130
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 212
Lsp1109I GCAGC 1 cut(s) 88
MaeIII GTNAC 2 cut(s) 34, 46
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 2 cut(s) 23, 86
MnlI CCTC 3 cut(s) 15, 102, 194
MseI TTAA 2 cut(s) 150, 171
MspCI CTTAAG 2 cut(s) 149, 170
Mva1269I GAATGC 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeII GATC 1 cut(s) 160
NlaIII CATG 2 cut(s) 101, 130
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 130
PctI GAATGC 1 cut(s) 55
PfeI GAWTC 2 cut(s) 69, 198
PkrI GCNGC 2 cut(s) 20, 78
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SaqAI TTAA 2 cut(s) 150, 171
SatI GCNGC 2 cut(s) 19, 77
Sau3AI GATC 1 cut(s) 160
SetI ASST 3 cut(s) 81, 90, 186
SmlI CTYRAG 2 cut(s) 149, 170
SmoI CTYRAG 2 cut(s) 149, 170
SsiI CCGC 3 cut(s) 19, 187, 209
TaaI ACNGT 2 cut(s) 34, 46
TaqI TCGA 1 cut(s) 59
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 2 cut(s) 69, 198
Tru1I TTAA 2 cut(s) 150, 171
Tru9I TTAA 2 cut(s) 150, 171
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 86
Vha464I CTTAAG 2 cut(s) 149, 170
XceI RCATGY 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.