pycom16g24740

Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
26361864 .. 26362076
213 bp
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UTR
Exon/CDS
Intron
pycom16g24740.1

Sequence Viewer

Length: 213 bp
ATGCCTCTGGAAGAAAGCCGCAAGCCTTTGACGGTCACTTTGCATTCGACCATTGGATTCTTGCAGCTCATCAAGCTTCCTCTTCATGCCCGACGAATAGTTATTTGCAAGCACATGCAAACTTCTATTCTCGTACTTAAGCAGTTTGATCTCTTGCTTAAGACTTTCCACCTCCGCCATCAAGGATTCAACTTGGCGGGAGCGAGCAAGTAG

Protein Analysis

71

Amino Acids

8.03

Weight (kDa)

10.63

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 19, 175, 197
AfaI GTAC 1 cut(s) 135
AflII CTTAAG 2 cut(s) 137, 158
AgsI TTSAA 1 cut(s) 190
AluBI AGCT 2 cut(s) 67, 76
AluI AGCT 2 cut(s) 67, 76
ApeKI GCWGC 1 cut(s) 64
ArsI GACNNNNNNTTYG 2 cut(s) 22, 54
BbvI GCAGC 1 cut(s) 76
BccI CCATC 1 cut(s) 186
BfrI CTTAAG 2 cut(s) 137, 158
BisI GCNGC 2 cut(s) 19, 65
BlsI GCNGC 2 cut(s) 20, 66
BseXI GCAGC 1 cut(s) 76
BsmI GAATGC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 3 cut(s) 19, 175, 197
BspTI CTTAAG 2 cut(s) 137, 158
BssMI GATC 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 87
BstAFI CTTAAG 2 cut(s) 137, 158
BstC8I GCNNGC 3 cut(s) 23, 110, 205
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 76
Cac8I GCNNGC 3 cut(s) 23, 110, 205
Csp6I GTAC 1 cut(s) 134
CviAII CATG 2 cut(s) 86, 115
CviJI RGCY 4 cut(s) 18, 25, 67, 76
CviKI_1 RGCY 4 cut(s) 18, 25, 67, 76
CviQI GTAC 1 cut(s) 134
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
EciI GGCGGA 1 cut(s) 164
FaeI CATG 2 cut(s) 89, 118
FaiI YATR 2 cut(s) 87, 116
FatI CATG 2 cut(s) 85, 114
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 19, 65
Fsp4HI GCNGC 2 cut(s) 19, 65
GluI GCNGC 2 cut(s) 19, 65
Hin1II CATG 2 cut(s) 89, 118
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 2 cut(s) 57, 186
Hpy188III TCNNGA 1 cut(s) 8
Hpy99I CGWCG 1 cut(s) 96
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 4 cut(s) 43, 64, 108, 118
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
Hsp92II CATG 2 cut(s) 89, 118
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 34
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 2 cut(s) 23, 74
MnlI CCTC 3 cut(s) 15, 90, 182
MseI TTAA 2 cut(s) 138, 159
MspCI CTTAAG 2 cut(s) 137, 158
Mva1269I GAATGC 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 73
NdeII GATC 1 cut(s) 148
NlaIII CATG 2 cut(s) 89, 118
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 118
PctI GAATGC 1 cut(s) 43
PfeI GAWTC 2 cut(s) 57, 186
PkrI GCNGC 2 cut(s) 20, 66
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
SaqAI TTAA 2 cut(s) 138, 159
SatI GCNGC 2 cut(s) 19, 65
Sau3AI GATC 1 cut(s) 148
SetI ASST 3 cut(s) 69, 78, 174
SmlI CTYRAG 2 cut(s) 137, 158
SmoI CTYRAG 2 cut(s) 137, 158
SsiI CCGC 3 cut(s) 19, 175, 197
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 47
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 2 cut(s) 57, 186
Tru1I TTAA 2 cut(s) 138, 159
Tru9I TTAA 2 cut(s) 138, 159
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 74
Vha464I CTTAAG 2 cut(s) 137, 158
XceI RCATGY 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.