pycom09g15110

Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
15000529 .. 15000714
186 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g15110.1

Sequence Viewer

Length: 186 bp
ATGCAAACTTCTATTCTCGTACTTAAGCTGTTTGATTTCCTGCTTAAGACTTTCCACCTCTGCCATCAACGATTCCACTTGGCGGGACCGAGCAAGCAGGCGTTGGCCCATGTTGGACACAGAACTCGCACACTGAACACTAAGTGCGAGAGACTCTTGAACGGCCAACTCATCGGACCGTCCTGA

Protein Analysis

62

Amino Acids

6.94

Weight (kDa)

10.45

Isoelectric Point (pI)

19.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 163
AdeI CACNNNGTG 1 cut(s) 144
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 82
AflII CTTAAG 2 cut(s) 23, 44
AgsI TTSAA 1 cut(s) 160
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 145
AoxI GGCC 2 cut(s) 105, 163
AspS9I GGNCC 3 cut(s) 86, 106, 176
AvaII GGWCC 2 cut(s) 86, 176
BccI CCATC 1 cut(s) 72
BceAI ACGGC 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 145
BfrI CTTAAG 2 cut(s) 23, 44
Bme18I GGWCC 2 cut(s) 86, 176
BmgT120I GGNCC 3 cut(s) 86, 106, 176
BmiI GGNNCC 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 82
BshFI GGCC 2 cut(s) 107, 165
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 99
BsnI GGCC 2 cut(s) 107, 165
BspACI CCGC 1 cut(s) 83
BspANI GGCC 2 cut(s) 107, 165
BspLI GGNNCC 1 cut(s) 87
BspTI CTTAAG 2 cut(s) 23, 44
Bst4CI ACNGT 1 cut(s) 180
BstAFI CTTAAG 2 cut(s) 23, 44
BstC8I GCNNGC 2 cut(s) 95, 99
BstDEI CTNAG 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 145
BsuRI GGCC 2 cut(s) 107, 165
BtsIMutI CAGTG 1 cut(s) 131
Cac8I GCNNGC 2 cut(s) 95, 99
Cfr13I GGNCC 3 cut(s) 86, 106, 176
CpoI CGGWCCG 1 cut(s) 176
Csp6I GTAC 1 cut(s) 20
CspI CGGWCCG 1 cut(s) 176
CviAII CATG 1 cut(s) 110
CviJI RGCY 3 cut(s) 28, 107, 165
CviKI_1 RGCY 3 cut(s) 28, 107, 165
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 1 cut(s) 141
DraIII CACNNNGTG 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 163
Eco47I GGWCC 2 cut(s) 86, 176
FaeI CATG 1 cut(s) 113
FaiI YATR 1 cut(s) 111
FaqI GGGAC 1 cut(s) 99
FatI CATG 1 cut(s) 109
FauI CCCGC 1 cut(s) 76
HaeIII GGCC 2 cut(s) 107, 165
Hin1II CATG 1 cut(s) 113
HinfI GANTC 2 cut(s) 72, 153
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 2 cut(s) 157, 183
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 141
Hsp92II CATG 1 cut(s) 113
LpnPI CCDG 2 cut(s) 53, 83
MlyI GAGTC 1 cut(s) 147
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 1 cut(s) 68
MseI TTAA 2 cut(s) 24, 45
MspCI CTTAAG 2 cut(s) 23, 44
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 72
PleI GAGTC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 3 cut(s) 86, 106, 176
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
Rsr2I CGGWCCG 1 cut(s) 176
RsrII CGGWCCG 1 cut(s) 176
SaqAI TTAA 2 cut(s) 24, 45
Sau96I GGNCC 3 cut(s) 86, 106, 176
SchI GAGTC 1 cut(s) 147
SetI ASST 2 cut(s) 30, 60
SinI GGWCC 2 cut(s) 86, 176
SmlI CTYRAG 2 cut(s) 23, 44
SmoI CTYRAG 2 cut(s) 23, 44
SsiI CCGC 1 cut(s) 83
TaaI ACNGT 1 cut(s) 180
TaqII GACCGA 1 cut(s) 103
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 2 cut(s) 24, 45
Tru9I TTAA 2 cut(s) 24, 45
TscAI CASTG 1 cut(s) 138
TspRI CASTG 1 cut(s) 138
Vha464I CTTAAG 2 cut(s) 23, 44
VpaK11BI GGWCC 2 cut(s) 86, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.